Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G2351 Cannabis sativa HOM05D005511 ORTHO05D006616 0.0e+00 1297.3 671 100.0
QL12p025629 Quercus lobata HOM05D005511 ORTHO05D006616 2.5e-252 875.5 704 68.9
Cfa013295 Carpinus fangiana HOM05D005511 ORTHO05D006616 4.8e-243 844.7 709 67.0
MD08G1126000 Malus domestica HOM05D005511 ORTHO05D006616 3.9e-237 825.1 699 68.0
Phvul.001G199500 Phaseolus vulgaris HOM05D005511 ORTHO05D006616 1.2e-233 813.5 713 64.0
Prupe.1G457600 Prunus persica HOM05D005511 ORTHO05D006616 1.5e-233 813.1 698 67.0
arahy.Tifrunner.gnm1.ann1.Q5NSRJ Arachis hypogaea HOM05D005511 ORTHO05D006616 3.6e-230 802.0 709 63.6
Dinv37487 Davidia involucrata HOM05D005511 ORTHO05D006616 1.5e-228 796.6 726 62.5
Lalb_Chr25g0287701 Lupinus albus HOM05D005511 ORTHO05D006616 2.5e-228 795.8 715 61.8
MD15G1105800 Malus domestica HOM05D005511 ORTHO05D006616 7.4e-228 794.3 698 66.0
VMungo1383G1052 Vigna mungo HOM05D005511 ORTHO05D006616 1.3e-227 793.5 716 62.6
ClCG05G026390 Citrullus lanatus HOM05D005511 ORTHO05D006616 3.7e-227 792.0 708 62.9
CsaV3_5G010440 Cucumis sativus L. HOM05D005511 ORTHO05D006616 6.9e-226 787.7 710 62.8
CiPaw.07G210700 Carya illinoinensis HOM05D005511 ORTHO05D006616 1.3e-224 783.5 693 63.3
CSS0031635 Camellia sinensis var. sinensis HOM05D005511 ORTHO05D006616 1.4e-223 780.0 697 64.3
arahy.Tifrunner.gnm1.ann1.V3D0DH Arachis hypogaea HOM05D005511 ORTHO05D006616 3.2e-223 778.9 741 60.6
Glyma.12G151100 Glycine max HOM05D005511 ORTHO05D006616 3.2e-223 778.9 733 60.7
Glyma.17G079400 Glycine max HOM05D005511 ORTHO05D006616 7.2e-223 777.7 733 60.3
Ciclev10014516m.g Citrus clementina HOM05D005511 ORTHO05D006616 3.9e-221 771.9 698 63.2
Cpa.g.sc81.17 Carica papaya HOM05D005511 ORTHO05D006616 1.1e-220 770.4 711 62.3
Sed0022409 Sechium edule HOM05D005511 ORTHO05D006616 4.4e-220 768.5 698 61.9
Thecc.09G000500 Theobroma cacao HOM05D005511 ORTHO05D006616 7.4e-220 767.7 724 60.9
Gohir.A06G108200 Gossypium hirsutum HOM05D005511 ORTHO05D006616 8.2e-219 764.2 704 62.4
TPR.G32311 Trifolium pratense HOM05D005511 ORTHO05D006616 7.0e-218 761.1 721 60.2
Eucgr.H04509 Eucalyptus grandis HOM05D005511 ORTHO05D006616 2.6e-217 759.2 697 63.0
Lj1g0000151 Lotus japonicus HOM05D005511 ORTHO05D006616 1.7e-216 756.5 715 60.3
TWI34G0645 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 2.9e-216 755.7 714 61.6
COL.COLO4_18647 Corchorus olitorius HOM05D005511 ORTHO05D006616 3.8e-216 755.4 711 60.6
Gorai.010G125400 Gossypium raimondii HOM05D005511 ORTHO05D006616 1.4e-215 753.4 704 61.8
Dinv38802 Davidia involucrata HOM05D005511 ORTHO05D006616 9.4e-215 750.7 659 63.9
Psat5g176520 Pisum sativum HOM05D005511 ORTHO05D006616 1.5e-212 743.4 716 60.2
GSVIVG01029743001 Vitis vinifera HOM05D005511 ORTHO05D006616 3.3e-212 742.3 704 60.8
Ca_09096_v3 Cicer arietinum L. HOM05D005511 ORTHO05D006616 2.8e-211 739.2 710 60.1
Hma1.2p1_1470F.1_g285590 Hydrangea macrophylla HOM05D005511 ORTHO05D006616 8.2e-211 737.6 695 60.6
TWI32G1116 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 3.1e-210 735.7 710 60.0
Medtr1g092770 Medicago truncatula HOM05D005511 ORTHO05D006616 2.0e-209 733.0 708 59.7
Actinidia31365 Actinidia chinensis HOM05D005511 ORTHO05D006616 1.1e-207 727.2 691 61.6
Potri.006G279800 Populus trichocarpa HOM05D005511 ORTHO05D006616 1.1e-207 727.2 698 61.3
GSVIVG01014608001 Vitis vinifera HOM05D005511 ORTHO05D006616 1.1e-207 727.2 704 60.7
TAR624G0177 Trochodendron aralioides HOM05D005511 ORTHO05D006616 2.5e-207 726.1 725 59.7
Duzib168G0441 Durio zibethinus HOM05D005511 ORTHO05D006616 1.6e-206 723.4 717 59.0
Potri.018G002000 Populus trichocarpa HOM05D005511 ORTHO05D006616 1.2e-204 717.2 643 63.5
RcHm_v2.0_Chr6g0305221 Rosa chinensis HOM05D005511 ORTHO05D006616 1.2e-201 707.2 541 70.1
PGR142G1479 Punica granatum HOM05D005511 ORTHO05D006616 5.9e-201 704.9 700 60.3
Nitab4.5_0013218g0030 Nicotiana tabacum HOM05D005511 ORTHO05D006616 1.3e-200 703.7 704 59.1
FAN15G0681 Fragaria x ananassa HOM05D005511 ORTHO05D006616 4.2e-199 698.7 570 66.1
Peaxi162Scf00096g01112 Petunia axillaris HOM05D005511 ORTHO05D006616 9.4e-199 697.6 708 58.1
FvH4_2g36600 Fragaria vesca HOM05D005511 ORTHO05D006616 2.7e-198 696.0 607 63.9
Nitab4.5_0001801g0060 Nicotiana tabacum HOM05D005511 ORTHO05D006616 2.7e-198 696.0 704 58.2
Cc03_g10050 Coffea canephora HOM05D005511 ORTHO05D006616 3.6e-198 695.7 708 58.8
vmacro03505 Vaccinium macrocarpon HOM05D005511 ORTHO05D006616 1.4e-197 693.7 694 59.2
CAN.G841.12 Capsicum annuum HOM05D005511 ORTHO05D006616 4.0e-197 692.2 706 57.8
CAN.G423.39 Capsicum annuum HOM05D005511 ORTHO05D006616 5.2e-197 691.8 705 58.3
Manes.03G000300 Manihot esculenta HOM05D005511 ORTHO05D006616 5.2e-197 691.8 704 57.7
MELO3C018377.2 Cucumis melo HOM05D005511 ORTHO05D006616 8.3e-195 684.5 636 61.3
Sabra18G0005200 Salix brachista HOM05D005511 ORTHO05D006616 8.3e-195 684.5 642 60.4
Solyc10g083200.2 Solanum lycopersicum HOM05D005511 ORTHO05D006616 8.3e-195 684.5 703 57.8
Sopen10g032680 Solanum pennellii HOM05D005511 ORTHO05D006616 7.0e-194 681.4 703 57.5
Hund14329 Selenicereus undatus HOM05D005511 ORTHO05D006616 4.5e-193 678.7 694 58.2
PGSC0003DMG400028246 Solanum tuberosum HOM05D005511 ORTHO05D006616 2.3e-192 676.4 703 57.3
AT4G31200 Arabidopsis thaliana HOM05D005511 ORTHO05D006616 2.9e-192 676.0 704 56.1
Peaxi162Scf01013g00235 Petunia axillaris HOM05D005511 ORTHO05D006616 1.1e-191 674.1 709 58.1
PSO541G5250 Papaver somniferum HOM05D005511 ORTHO05D006616 5.5e-191 671.8 732 56.0
MSTRG.966 Avicennia marina HOM05D005511 ORTHO05D006616 9.5e-191 671.0 704 56.4
DCAR_027476 Daucus carota HOM05D005511 ORTHO05D006616 3.6e-190 669.1 737 56.3
THA.LOC104819918 Tarenaya hassleriana HOM05D005511 ORTHO05D006616 6.1e-190 668.3 710 56.5
AL7G20880 Arabidopsis lyrata HOM05D005511 ORTHO05D006616 2.3e-189 666.4 695 56.0
HPP92_005904 Vanilla planifolia HOM05D005511 ORTHO05D006616 2.3e-189 666.4 713 58.1
Rhsim04G0157200 Rhododendron simsii HOM05D005511 ORTHO05D006616 1.5e-188 663.7 691 58.0
Lsat_1_v5_gn_4_32681 Lactuca sativa HOM05D005511 ORTHO05D006616 2.8e-187 659.4 700 57.4
Nitab4.5_0000167g0180 Nicotiana tabacum HOM05D005511 ORTHO05D006616 4.9e-187 658.7 710 56.6
FAN27G2128 Fragaria x ananassa HOM05D005511 ORTHO05D007122 6.3e-187 658.3 538 66.2
CARHR239100 Cardamine hirsuta HOM05D005511 ORTHO05D006616 8.3e-187 657.9 704 56.0
Carub.0007s0934 Capsella rubella HOM05D005511 ORTHO05D006616 3.1e-186 656.0 699 54.6
Thhalv10024645m.g Eutrema salsugineum HOM05D005511 ORTHO05D006616 7.8e-185 651.4 699 54.5
Ah.07g201420 Amaranthus hybridus HOM05D005511 ORTHO05D006616 1.0e-184 651.0 698 55.0
Oeu009791.1 Olea europaea HOM05D005511 ORTHO05D006616 1.7e-184 650.2 699 55.2
EL10Ac5g11907 Beta vulgaris HOM05D005511 ORTHO05D006616 7.3e-183 644.8 697 55.4
MBI02_g34313_MAGBIO Magnolia biondii HOM05D005511 ORTHO05D006616 1.2e-182 644.0 589 61.6
Oeu001428.2 Olea europaea HOM05D005511 ORTHO05D006616 1.6e-182 643.7 699 54.8
FAN20G1701 Fragaria x ananassa HOM05D005511 ORTHO05D007122 1.4e-181 640.6 546 64.7
Aa31LG11G2310 Aethionema arabicum HOM05D005511 ORTHO05D006616 1.2e-180 637.5 700 55.1
CDE07G1638 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 5.8e-180 635.2 704 55.0
Sp7g29080 Schrenkiella parvula HOM05D005511 ORTHO05D006616 7.5e-180 634.8 691 54.8
HanXRQChr03g0093821 Helianthus annuus HOM05D005511 ORTHO05D006616 2.2e-179 633.3 642 57.0
Aqoxy4G02032 Aquilegia oxysepala HOM05D005511 ORTHO05D006616 1.6e-177 627.1 718 56.7
A01p07040 Brassica napus HOM05D005511 ORTHO05D006616 1.7e-176 623.6 693 53.4
Oeu018783.1 Olea europaea HOM05D005511 ORTHO05D006616 1.1e-175 620.9 700 52.9
CSS0032846 Camellia sinensis var. sinensis HOM05D005511 ORTHO05D006616 3.3e-175 619.4 686 55.8
BraA01t00656Z Brassica rapa HOM05D005511 ORTHO05D006616 1.4e-173 614.0 688 53.5
AUR62007421 Chenopodium quinoa HOM05D005511 ORTHO05D006616 4.4e-172 609.0 697 52.8
ECA234G2010 Erigeron canadensis HOM05D005511 ORTHO05D006616 1.7e-171 607.1 669 55.2
BcaC09g51902 Brassica carinata HOM05D005511 ORTHO05D006616 4.9e-171 605.5 703 52.1
C01p07790 Brassica napus HOM05D005511 ORTHO05D006616 6.4e-171 605.1 703 52.1
CDE06G2039 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 1.9e-170 603.6 689 53.7
BolC1t00765H Brassica oleracea HOM05D005511 ORTHO05D006616 8.6e-168 594.7 703 51.6
Sc03g0008920 Simmondsia chinensis HOM05D005511 ORTHO05D006616 8.1e-166 588.2 719 52.0
ATR1145G079 Amborella trichopoda HOM05D005511 ORTHO05D006616 3.1e-165 586.3 709 51.9
Nitab4.5_0001579g0070 Nicotiana tabacum HOM05D005511 ORTHO05D006616 2.2e-163 580.1 758 49.3
Os06g0682700 Oryza sativa ssp. japonica HOM05D005511 ORTHO05D006616 3.2e-162 576.2 580 57.1
ATR0686G209 Amborella trichopoda HOM05D005511 ORTHO05D006616 5.1e-160 568.9 709 51.5
Migut.H02336 Erythranthe guttata HOM05D005511 ORTHO05D006616 1.6e-153 547.4 695 50.1
Lj3A264G15 Lonicera japonica HOM05D005511 ORTHO05D006616 2.5e-151 540.0 639 53.5
AUR62027311 Chenopodium quinoa HOM05D005511 ORTHO05D006616 1.5e-143 514.2 558 53.6
SGA_v2.0_scaffold188G40311 Striga asiatica HOM05D005511 ORTHO05D006616 1.1e-133 481.5 569 52.2
Mapoly0058s0003 Marchantia polymorpha HOM05D005511 ORTHO05D006616 1.4e-133 481.1 654 47.1
Pp3c17_14220 Physcomitrium patens HOM05D005511 ORTHO05D006616 1.4e-133 481.1 682 46.6
Sc03g0008950 Simmondsia chinensis HOM05D005511 ORTHO05D006616 7.6e-132 475.3 493 56.8
unitig_32.g11169 Utricularia gibba HOM05D005511 ORTHO05D006616 3.5e-121 439.9 604 49.0
Nn1g03658 Nelumbo nucifera HOM05D005511 ORTHO05D006616 2.8e-118 430.3 458 56.3
Haze_21772 Corylus avellana HOM05D005511 ORTHO05D006616 2.4e-117 427.2 331 69.5
Atru.chr7.2703 Acer truncatum HOM05D005511 ORTHO05D006616 2.1e-113 414.1 327 67.0
Sabra06G0216900 Salix brachista HOM05D005511 ORTHO05D006616 3.4e-108 396.7 358 61.5
Hma1.2p1_0379F.1_g139860 Hydrangea macrophylla HOM05D005511 ORTHO05D006616 6.7e-104 382.5 324 63.6
Zm00001eb273620 Zea mays HOM05D005511 ORTHO05D006616 6.7e-104 382.5 395 55.4
Atru.chr7.2702 Acer truncatum HOM05D005511 ORTHO05D006616 9.7e-103 378.6 358 61.7
Haze_21773 Corylus avellana HOM05D005511 ORTHO05D006616 2.4e-101 374.0 356 61.2
SMO147G0244 Selaginella moellendorffii HOM05D005511 ORTHO05D006616 5.3e-101 372.9 576 41.3
CBR_g29483 Chara braunii HOM05D000785 ORTHO05D006616 1.2e-87 328.6 839 32.8
CBR_g44445 Chara braunii HOM05D005511 ORTHO05D006616 1.4e-85 321.6 881 32.7
Sabra06G0216800 Salix brachista HOM05D005511 ORTHO05D006616 1.4e-77 295.0 334 61.7
SHI01952 Sapria himalayana HOM05D005511 ORTHO05D006616 2.6e-71 274.2 379 45.6
SEGI_09992 Sequoiadendron giganteum HOM05D005511 ORTHO05D006616 3.7e-70 270.4 373 45.0
SHI01951 Sapria himalayana HOM05D000002 ORTHO05D000001 6.1e-65 253.1 335 48.7
MELO3C003615.2 Cucumis melo HOM05D005511 ORTHO05D006616 1.6e-60 238.4 222 61.7
VMungo1383G0863 Vigna mungo HOM05D005511 ORTHO05D006616 1.1e-58 232.3 142 79.6
AagrBONN_evm.TU.Sc2ySwM_228.1219 Anthoceros agrestis HOM05D005511 ORTHO05D006616 5.8e-55 219.9 414 37.4
ATR0686G036 Amborella trichopoda HOM05D005511 ORTHO05D006616 3.5e-52 210.7 300 45.0
unitig_748.g7741 Utricularia gibba HOM05D005511 ORTHO05D006616 5.2e-48 196.8 276 47.1
CANSAT21G0937 Cannabis sativa HOM05D005511 ORTHO05D006616 5.8e-47 193.4 527 31.9
Actinidia34689 Actinidia chinensis HOM05D005511 ORTHO05D006616 6.0e-44 183.3 214 50.5
Nitab4.5_0000365g0090 Nicotiana tabacum HOM05D005511 ORTHO05D006616 4.7e-41 173.7 130 69.2
CDE06G0583 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 1.7e-38 165.2 198 45.5
Psat6g134200 Pisum sativum HOM05D005511 ORTHO05D006616 4.9e-38 163.7 137 61.3
ATR1145G067 Amborella trichopoda HOM05D005511 ORTHO05D006616 1.9e-34 151.8 274 38.3
Cre04.g222300 Chlamydomonas reinhardtii HOM05D005511 ORTHO05D006616 1.3e-22 112.5 807 22.6
PGSC0003DMG400027627 Solanum tuberosum HOM05D005511 ORTHO05D006616 9.6e-18 96.3 80 66.2
MCO14G468 Micromonas commoda HOM05D000251 ORTHO05D007889 6.7e-11 73.6 121 41.3
Pp3c6_280 Physcomitrium patens HOM05D000251 ORTHO05D007889 1.5e-10 72.4 105 41.9
TWI81G0067 Tripterygium wilfordii HOM05D000251 ORTHO05D007889 4.5e-07 60.8 65 49.2
PRCOL_00003511 Prasinoderma coloniale HOM05D005511 ORTHO05D006616 7.6e-07 60.1 67 43.3
AUR62032169 Chenopodium quinoa HOM05D000251 ORTHO05D007889 1.0e-06 59.7 96 38.5
CAN.G781.3 Capsicum annuum HOM05D000251 ORTHO05D007889 1.7e-06 58.9 90 43.3
AUR62036928 Chenopodium quinoa HOM05D000251 ORTHO05D007889 2.9e-06 58.2 97 38.1
PRCOL_00003186 Prasinoderma coloniale HOM05D000032 ORTHO05D006970 2.9e-06 58.2 56 46.4
arahy.Tifrunner.gnm1.ann1.ESZ5GR Arachis hypogaea HOM05D000251 ORTHO05D007889 3.8e-06 57.8 74 44.6
arahy.Tifrunner.gnm1.ann1.MAJ7P0 Arachis hypogaea HOM05D000251 ORTHO05D007889 3.8e-06 57.8 74 44.6
FvH4_5g12911 Fragaria vesca HOM05D000251 ORTHO05D007889 3.8e-06 57.8 92 41.3
FAN13G2548 Fragaria x ananassa HOM05D000251 ORTHO05D000414 3.8e-06 57.8 92 41.3
FAN18G2230 Fragaria x ananassa HOM05D000251 ORTHO05D007889 3.8e-06 57.8 92 41.3
FAN18G3790 Fragaria x ananassa HOM05D000251 ORTHO05D007889 3.8e-06 57.8 92 41.3
Solyc03g114410.3 Solanum lycopersicum HOM05D000251 ORTHO05D007889 3.8e-06 57.8 72 47.2
MD14G1219700 Malus domestica HOM05D000251 ORTHO05D007889 5.0e-06 57.4 89 41.6
RcHm_v2.0_Chr7g0184311 Rosa chinensis HOM05D000251 ORTHO05D007889 5.0e-06 57.4 92 41.3
TAR629G2997 Trochodendron aralioides HOM05D000874 ORTHO05D001267 5.0e-06 57.4 51 47.1
Dinv36870 Davidia involucrata HOM05D000251 ORTHO05D007889 6.5e-06 57.0 91 42.9
Actinidia31039 Actinidia chinensis HOM05D000251 ORTHO05D007889 8.4e-06 56.6 91 41.8
Cpa.g.sc13.78 Carica papaya HOM05D000251 ORTHO05D007889 8.4e-06 56.6 90 41.1
Cc04_g07720 Coffea canephora HOM05D000251 ORTHO05D007889 8.4e-06 56.6 92 41.3
Psat4g045640 Pisum sativum HOM05D000251 ORTHO05D007889 8.4e-06 56.6 84 41.7
TAR371G0581 Trochodendron aralioides HOM05D000874 ORTHO05D003941 8.4e-06 56.6 69 42.0


User provided reference genes

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