Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G1301 Cannabis sativa HOM05D006408 ORTHO05D008038 9.7e-228 793.1 396 100.0
Cfa018129 Carpinus fangiana HOM05D006408 ORTHO05D008038 1.4e-141 506.9 330 77.6
MELO3C010512.2 Cucumis melo HOM05D006408 ORTHO05D008038 2.2e-139 499.6 369 70.2
CiPaw.16G022700 Carya illinoinensis HOM05D006408 ORTHO05D008038 2.9e-139 499.2 329 76.9
MD08G1159400 Malus domestica HOM05D006408 ORTHO05D008038 2.5e-138 496.1 341 74.8
Atru.chr13.1568 Acer truncatum HOM05D006408 ORTHO05D008038 3.2e-138 495.7 338 74.3
ClCG11G015980 Citrullus lanatus HOM05D006408 ORTHO05D008038 2.7e-137 492.7 336 73.5
Prupe.1G489500 Prunus persica HOM05D006408 ORTHO05D008038 2.7e-137 492.7 336 75.0
CsaV3_4G028270 Cucumis sativus L. HOM05D006408 ORTHO05D008038 3.6e-137 492.3 339 73.5
Aqoxy5G02393 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 3.9e-136 488.8 341 73.9
Cpa.g.sc26.317 Carica papaya HOM05D006408 ORTHO05D008038 6.7e-136 488.0 333 73.6
TAR628G0457 Trochodendron aralioides HOM05D006408 ORTHO05D008038 8.8e-136 487.6 290 82.4
Manes.02G168400 Manihot esculenta HOM05D006408 ORTHO05D008038 2.0e-135 486.5 341 72.7
Gorai.005G087700 Gossypium raimondii HOM05D006408 ORTHO05D008038 7.4e-135 484.6 332 73.5
Sp1g19130 Schrenkiella parvula HOM05D006408 ORTHO05D008038 9.7e-135 484.2 293 80.5
Sopen04g025710 Solanum pennellii HOM05D006408 ORTHO05D008038 2.8e-134 482.6 332 72.6
RcHm_v2.0_Chr6g0296711 Rosa chinensis HOM05D006408 ORTHO05D008038 6.3e-134 481.5 342 72.2
MBI03_g48069_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 1.1e-133 480.7 348 71.0
Solyc04g057870.3 Solanum lycopersicum HOM05D006408 ORTHO05D008038 1.1e-133 480.7 334 72.5
Thecc.08G133100 Theobroma cacao HOM05D006408 ORTHO05D008038 1.8e-133 479.9 332 73.8
PSO017G3385 Papaver somniferum HOM05D006408 ORTHO05D008038 2.4e-133 479.6 343 71.4
CAN.G288.5 Capsicum annuum HOM05D006408 ORTHO05D008038 3.1e-133 479.2 330 72.1
CDE06G0572 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 4.1e-133 478.8 286 80.1
Peaxi162Scf00066g00222 Petunia axillaris HOM05D006408 ORTHO05D008038 1.2e-132 477.2 334 71.3
THA.LOC104814021 Tarenaya hassleriana HOM05D006408 ORTHO05D008038 1.5e-132 476.9 280 82.1
CARHR021960 Cardamine hirsuta HOM05D006408 ORTHO05D008038 2.0e-132 476.5 326 73.3
A06p17690 Brassica napus HOM05D006408 ORTHO05D008038 2.6e-132 476.1 336 72.0
BraA06t24861Z Brassica rapa HOM05D006408 ORTHO05D008038 2.6e-132 476.1 336 72.0
Nitab4.5_0001168g0170 Nicotiana tabacum HOM05D006408 ORTHO05D008038 2.6e-132 476.1 328 72.3
PSO170G2303 Papaver somniferum HOM05D006408 ORTHO05D008038 5.9e-132 474.9 355 70.1
PGR083G0137 Punica granatum HOM05D006408 ORTHO05D008038 1.3e-131 473.8 339 72.0
C05p20590 Brassica napus HOM05D006408 ORTHO05D008038 3.8e-131 472.2 330 72.4
BolC5t30757H Brassica oleracea HOM05D006408 ORTHO05D008038 3.8e-131 472.2 330 72.4
Potri.002G078900 Populus trichocarpa HOM05D006408 ORTHO05D008038 6.5e-131 471.5 305 76.4
AL1G34740 Arabidopsis lyrata HOM05D006408 ORTHO05D008038 8.5e-131 471.1 331 71.9
Nn1g08961 Nelumbo nucifera HOM05D006408 ORTHO05D008038 1.6e-129 466.8 336 71.4
Aa31LG7G5580 Aethionema arabicum HOM05D006408 ORTHO05D008038 2.1e-129 466.5 356 68.8
FAN20G2488 Fragaria x ananassa HOM05D006408 ORTHO05D008038 4.7e-129 465.3 340 72.4
VMungo1309G0712 Vigna mungo HOM05D006408 ORTHO05D008038 7.9e-129 464.5 335 69.0
PGSC0003DMG400028061 Solanum tuberosum HOM05D006408 ORTHO05D008038 1.0e-128 464.2 320 72.2
EL10Ac1g01346 Beta vulgaris HOM05D006408 ORTHO05D008038 1.8e-128 463.4 333 72.1
Phvul.009G129900 Phaseolus vulgaris HOM05D006408 ORTHO05D008038 1.8e-128 463.4 335 69.6
Ciclev10001886m.g Citrus clementina HOM05D006408 ORTHO05D008038 5.1e-128 461.8 336 70.8
CDE04G0676 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 4.4e-127 458.8 274 79.9
FAN27G1901 Fragaria x ananassa HOM05D006408 ORTHO05D008038 6.3e-126 454.9 341 71.3
Ca_16607_v3 Cicer arietinum L. HOM05D006408 ORTHO05D008038 3.1e-125 452.6 337 68.2
FAN24G2159 Fragaria x ananassa HOM05D006408 ORTHO05D008038 3.1e-125 452.6 341 71.3
Glyma.04G087000 Glycine max HOM05D006408 ORTHO05D008038 4.1e-125 452.2 331 68.9
Lalb_Chr08g0241101 Lupinus albus HOM05D006408 ORTHO05D008038 9.1e-125 451.1 341 68.3
Glyma.06G117500 Glycine max HOM05D006408 ORTHO05D008038 1.2e-124 450.7 330 68.8
Psat5g084760 Pisum sativum HOM05D006408 ORTHO05D008038 3.5e-124 449.1 309 71.8
Actinidia15213 Actinidia chinensis HOM05D006408 ORTHO05D008038 5.9e-124 448.4 320 70.9
Sed0021255 Sechium edule HOM05D006408 ORTHO05D008038 2.9e-123 446.0 341 67.2
Eucgr.A00239 Eucalyptus grandis HOM05D006408 ORTHO05D008038 3.8e-123 445.7 324 71.0
CSS0036755 Camellia sinensis var. sinensis HOM05D006408 ORTHO05D008038 1.1e-122 444.1 331 70.4
HanXRQChr02g0045521 Helianthus annuus HOM05D006408 ORTHO05D008038 1.9e-122 443.4 311 71.1
Medtr3g088605 Medicago truncatula HOM05D006408 ORTHO05D008038 1.9e-122 443.4 330 67.9
Hma1.2p1_1121F.1_g259280 Hydrangea macrophylla HOM05D006408 ORTHO05D008038 2.5e-122 443.0 337 69.1
DCAR_003587 Daucus carota HOM05D006408 ORTHO05D008038 3.2e-122 442.6 263 79.1
arahy.Tifrunner.gnm1.ann1.227FW7 Arachis hypogaea HOM05D006408 ORTHO05D008038 5.5e-122 441.8 336 69.9
unitig_52.g17545 Utricularia gibba HOM05D006408 ORTHO05D008038 9.4e-122 441.0 282 74.1
AT1G21600 Arabidopsis thaliana HOM05D006408 ORTHO05D008038 1.6e-121 440.3 293 74.7
ATR0568G086 Amborella trichopoda HOM05D006408 ORTHO05D008038 6.1e-121 438.3 279 75.6
arahy.Tifrunner.gnm1.ann1.8X384Y Arachis hypogaea HOM05D006408 ORTHO05D008038 1.4e-120 437.2 340 69.1
Gohir.D02G078200 Gossypium hirsutum HOM05D006408 ORTHO05D008038 3.9e-120 435.6 332 68.1
Cc10_g13760 Coffea canephora HOM05D006408 ORTHO05D008038 6.7e-120 434.9 336 65.5
MSTRG.22398 Avicennia marina HOM05D006408 ORTHO05D008038 9.7e-119 431.0 335 66.9
BcaC05g26077 Brassica carinata HOM05D006408 ORTHO05D008038 2.2e-118 429.9 330 67.3
TPR.G28811 Trifolium pratense HOM05D006408 ORTHO05D008038 2.8e-118 429.5 336 65.2
Lj4A682G50 Lonicera japonica HOM05D006408 ORTHO05D008038 3.7e-118 429.1 250 81.2
FAN15G0171 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.2e-116 424.1 254 80.3
GSVIVG01008807001 Vitis vinifera HOM05D006408 ORTHO05D008038 5.9e-116 421.8 222 89.2
Oeu047179.2 Olea europaea HOM05D006408 ORTHO05D008038 1.3e-115 420.6 338 64.5
Migut.N03260 Erythranthe guttata HOM05D006408 ORTHO05D008038 2.2e-115 419.9 229 83.8
Carub.0001s2103 Capsella rubella HOM05D006408 ORTHO05D008038 5.0e-115 418.7 225 87.1
QL09p032485 Quercus lobata HOM05D006408 ORTHO05D008038 1.1e-114 417.5 223 87.0
BcaB07g32155 Brassica carinata HOM05D006408 ORTHO05D008038 4.2e-114 415.6 325 67.1
HPP92_009911 Vanilla planifolia HOM05D006408 ORTHO05D008038 1.6e-113 413.7 278 71.2
FvH4_2g27850 Fragaria vesca HOM05D006408 ORTHO05D008038 6.7e-112 408.3 340 65.6
ECA236G3303 Erigeron canadensis HOM05D006408 ORTHO05D008038 1.5e-111 407.1 341 62.8
Lj1g0002290 Lotus japonicus HOM05D006408 ORTHO05D008038 3.3e-111 406.0 298 69.1
Ah.10g032560 Amaranthus hybridus HOM05D006408 ORTHO05D008038 1.8e-109 400.2 299 68.2
Lsat_1_v5_gn_1_7780 Lactuca sativa HOM05D006408 ORTHO05D008038 1.6e-108 397.1 340 61.8
BolC8t49731H Brassica oleracea HOM05D006408 ORTHO05D008038 6.3e-102 375.2 343 60.3
Gohir.A02G071000 Gossypium hirsutum HOM05D006408 ORTHO05D008038 3.1e-101 372.9 332 61.4
A08p28910 Brassica napus HOM05D006408 ORTHO05D008038 5.4e-101 372.1 206 85.4
Thhalv10007813m.g Eutrema salsugineum HOM05D006408 ORTHO05D008038 7.7e-100 368.2 230 78.7
Hund17341 Selenicereus undatus HOM05D006408 ORTHO05D008038 2.5e-98 363.2 323 61.3
AUR62007717 Chenopodium quinoa HOM05D006408 ORTHO05D008038 1.8e-96 357.1 329 58.4
Nitab4.5_0003978g0010 Nicotiana tabacum HOM05D006408 ORTHO05D008038 4.0e-96 355.9 260 69.6
SGA_v2.0_scaffold25G11139 Striga asiatica HOM05D006408 ORTHO05D008038 8.9e-96 354.8 321 58.3
AUR62013426 Chenopodium quinoa HOM05D006408 ORTHO05D008038 1.5e-95 354.0 329 57.8
Os11g0110100 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 2.6e-95 353.2 225 71.1
Os12g0110400 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 2.6e-95 353.2 225 71.1
Zm00001eb195160 Zea mays HOM05D006408 ORTHO05D008038 9.8e-95 351.3 257 63.0
Rhsim06G0091400 Rhododendron simsii HOM05D006408 ORTHO05D008038 1.2e-92 344.4 496 44.4
Sc26g0002930 Simmondsia chinensis HOM05D006408 ORTHO05D008038 7.8e-84 315.1 262 64.9
SEGI_15088 Sequoiadendron giganteum HOM05D006408 ORTHO05D008038 2.3e-80 303.5 225 59.6
C08p20930 Brassica napus HOM05D006408 ORTHO05D008038 2.0e-79 300.4 265 60.4
Mapoly0008s0219 Marchantia polymorpha HOM05D006408 ORTHO05D008038 3.7e-78 296.2 284 51.1
vmacro20822 Vaccinium macrocarpon HOM05D006408 ORTHO05D008038 3.2e-77 293.1 167 82.6
Duzib093G1884 Durio zibethinus HOM05D006408 ORTHO05D008038 5.6e-74 282.3 224 65.2
Pp3c1_1000 Physcomitrium patens HOM05D006408 ORTHO05D008038 2.3e-72 276.9 282 49.6
CsaV3_5G019980 Cucumis sativus L. HOM05D006408 ORTHO05D008038 3.4e-71 273.1 220 63.2
COL.COLO4_06961 Corchorus olitorius HOM05D006408 ORTHO05D008038 1.3e-67 261.2 228 61.4
BraA08t34821Z Brassica rapa HOM05D006408 ORTHO05D008038 1.2e-65 254.6 264 55.7
CsaV3_UNG224650 Cucumis sativus L. HOM05D006408 ORTHO05D008038 3.6e-65 253.1 213 62.0
SMO146G0302 Selaginella moellendorffii HOM05D006408 ORTHO05D008038 7.8e-60 235.3 208 52.4
MBI03_g28486_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 5.1e-59 232.6 249 55.0
SalBow2G2951 Salvia bowleyana HOM05D006408 ORTHO05D008038 5.1e-59 232.6 119 86.6
Dinv14691 Davidia involucrata HOM05D006408 ORTHO05D008038 2.8e-57 226.9 193 64.8
MBI03_g39652_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 2.4e-48 197.2 204 55.4
Sabra02G0061800 Salix brachista HOM05D006408 ORTHO05D008038 1.1e-40 171.8 97 82.5
Aqoxy219s001 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 1.2e-36 158.3 109 72.5
CBR_g40143 Chara braunii HOM05D006408 ORTHO05D008038 4.0e-32 143.3 175 39.4
CsaV3_5G018920 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.1e-29 135.2 155 48.4
BolC5t30909H Brassica oleracea HOM05D006408 ORTHO05D008038 2.5e-26 124.0 62 88.7
Actinidia21278 Actinidia chinensis HOM05D006408 ORTHO05D008038 2.2e-22 110.9 104 57.7
AagrBONN_evm.TU.Sc2ySwM_344.4901 Anthoceros agrestis HOM05D006408 ORTHO05D008038 7.2e-21 105.9 139 45.3
MBI14_g28586_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 1.7e-14 84.7 43 93.0
CsaV3_UNG111870 Cucumis sativus L. HOM05D006408 ORTHO05D008038 9.7e-10 68.9 68 54.4
CsaV3_UNG115880 Cucumis sativus L. HOM05D006408 ORTHO05D008038 9.7e-10 68.9 68 54.4
CsaV3_5G018930 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.2e-07 62.0 60 56.7
A08p28900 Brassica napus HOM05D006408 ORTHO05D008038 5.9e-07 59.7 50 64.0


User provided reference genes

Program Settings