Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G2561 Cannabis sativa HOM05D004433 ORTHO05D005251 0.0e+00 1225.7 631 100.0
CANSAT21G1878 Cannabis sativa HOM05D004433 ORTHO05D005251 3.1e-300 1034.6 548 98.7
FvH4_2g35220 Fragaria vesca HOM05D004433 ORTHO05D005251 1.8e-236 822.8 537 79.1
FAN15G1676 Fragaria x ananassa HOM05D004433 ORTHO05D005251 3.2e-233 812.0 555 76.2
RcHm_v2.0_Chr6g0306711 Rosa chinensis HOM05D004433 ORTHO05D005251 3.2e-233 812.0 537 78.2
Cfa013388 Carpinus fangiana HOM05D004433 ORTHO05D005251 1.6e-227 793.1 535 78.5
Ciclev10007803m.g Citrus clementina HOM05D004433 ORTHO05D005251 1.2e-224 783.5 544 75.2
Atru.chr7.2050 Acer truncatum HOM05D004433 ORTHO05D005251 3.6e-224 781.9 536 76.9
FAN20G2992 Fragaria x ananassa HOM05D004433 ORTHO05D005251 2.6e-222 775.8 544 75.0
Prupe.1G444400 Prunus persica HOM05D004433 ORTHO05D005251 7.5e-222 774.2 542 74.7
TAR639G0002 Trochodendron aralioides HOM05D004433 ORTHO05D005251 2.8e-221 772.3 545 74.5
arahy.Tifrunner.gnm1.ann1.AK26AV Arachis hypogaea HOM05D004433 ORTHO05D005251 8.2e-221 770.8 547 74.4
CiPaw.08G027400 Carya illinoinensis HOM05D004433 ORTHO05D005251 1.8e-220 769.6 542 75.1
Thecc.09G048300 Theobroma cacao HOM05D004433 ORTHO05D005251 7.0e-220 767.7 538 75.3
TWI34G1917 Tripterygium wilfordii HOM05D004433 ORTHO05D005251 7.0e-220 767.7 541 74.7
CAN.G1444.6 Capsicum annuum HOM05D004433 ORTHO05D005251 9.1e-220 767.3 543 74.2
QL12p040912 Quercus lobata HOM05D004433 ORTHO05D005251 1.2e-219 766.9 509 77.4
GSVIVG01035316001 Vitis vinifera HOM05D004433 ORTHO05D005251 1.2e-219 766.9 540 73.3
Ca_03360_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 1.6e-219 766.5 502 79.9
Glyma.14G144100 Glycine max HOM05D004433 ORTHO05D005251 2.0e-219 766.1 540 75.7
Nn8g39044 Nelumbo nucifera HOM05D004433 ORTHO05D005251 2.7e-219 765.8 580 72.1
Eucgr.C00613 Eucalyptus grandis HOM05D004433 ORTHO05D005251 3.5e-219 765.4 510 77.1
PGR031G3150 Punica granatum HOM05D004433 ORTHO05D005251 7.7e-219 764.2 507 78.1
CSS0005257 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 1.3e-218 763.5 547 74.8
CSS0005508 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 1.3e-218 763.5 547 74.8
Gohir.A06G091200 Gossypium hirsutum HOM05D004433 ORTHO05D005251 1.1e-217 760.4 538 74.5
Potri.018G057500 Populus trichocarpa HOM05D004433 ORTHO05D005251 1.1e-217 760.4 510 77.3
MSTRG.25921 Avicennia marina HOM05D004433 ORTHO05D005251 1.5e-217 760.0 523 74.2
Nitab4.5_0008242g0010 Nicotiana tabacum HOM05D004433 ORTHO05D005251 1.5e-217 760.0 537 74.3
Phvul.001G078300 Phaseolus vulgaris HOM05D004433 ORTHO05D005251 2.5e-217 759.2 536 74.3
Gohir.D06G090400 Gossypium hirsutum HOM05D004433 ORTHO05D005251 3.2e-217 758.8 541 74.3
Sopen08g019860 Solanum pennellii HOM05D004433 ORTHO05D005251 4.2e-217 758.4 542 73.6
Solyc08g066180.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 1.2e-216 756.9 542 73.4
Medtr1g007320 Medicago truncatula HOM05D004433 ORTHO05D005251 1.6e-216 756.5 505 78.6
MD08G1110200 Malus domestica HOM05D004433 ORTHO05D005251 2.7e-216 755.7 540 73.7
Duzib168G1809 Durio zibethinus HOM05D004433 ORTHO05D005251 4.7e-216 755.0 540 73.7
ClCG11G015050 Citrullus lanatus HOM05D004433 ORTHO05D005251 6.1e-216 754.6 554 73.1
Sed0005675 Sechium edule HOM05D004433 ORTHO05D005251 1.0e-215 753.8 529 74.3
Duzib150G0295 Durio zibethinus HOM05D004433 ORTHO05D005251 4.0e-215 751.9 613 67.4
FAN27G1484 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.5e-214 750.0 575 70.4
Dinv27935 Davidia involucrata HOM05D004433 ORTHO05D005251 2.6e-214 749.2 540 74.4
Lalb_Chr22g0360911 Lupinus albus HOM05D004433 ORTHO05D005251 2.6e-214 749.2 537 74.3
VMungo1383G1648 Vigna mungo HOM05D004433 ORTHO05D005251 2.6e-214 749.2 533 73.9
Aqoxy5G01364 Aquilegia oxysepala HOM05D004433 ORTHO05D005251 3.4e-214 748.8 512 75.2
Psat6g036080 Pisum sativum HOM05D004433 ORTHO05D005251 8.3e-213 744.2 509 76.4
Aa31LG5G9810 Aethionema arabicum HOM05D004433 ORTHO05D005251 1.1e-212 743.8 542 72.3
MELO3C003474.2 Cucumis melo HOM05D004433 ORTHO05D005251 1.1e-212 743.8 531 73.6
Oeu019243.1 Olea europaea HOM05D004433 ORTHO05D005251 1.1e-212 743.8 511 75.7
Sp4g05710 Schrenkiella parvula HOM05D004433 ORTHO05D005251 3.1e-212 742.3 590 68.0
THA.LOC104818595 Tarenaya hassleriana HOM05D004433 ORTHO05D005251 5.4e-212 741.5 589 67.2
A04p20080 Brassica napus HOM05D004433 ORTHO05D005251 7.0e-212 741.1 573 68.8
Gorai.010G104100 Gossypium raimondii HOM05D004433 ORTHO05D005251 7.0e-212 741.1 567 70.9
BraA04t17590Z Brassica rapa HOM05D004433 ORTHO05D005251 1.2e-211 740.3 573 68.8
HanXRQChr02g0047921 Helianthus annuus HOM05D004433 ORTHO05D005251 2.7e-211 739.2 583 67.2
BcaB06g29637 Brassica carinata HOM05D004433 ORTHO05D005251 4.5e-211 738.4 572 68.5
BcaB06g29638 Brassica carinata HOM05D004433 ORTHO05D005251 4.5e-211 738.4 591 67.0
BolC4t27102H Brassica oleracea HOM05D004433 ORTHO05D005251 4.5e-211 738.4 572 68.5
Migut.A00179 Erythranthe guttata HOM05D004433 ORTHO05D005251 4.5e-211 738.4 546 71.4
Thhalv10001936m.g Eutrema salsugineum HOM05D004433 ORTHO05D005251 7.7e-211 737.6 541 71.7
TPR.G24519 Trifolium pratense HOM05D004433 ORTHO05D005251 1.0e-210 737.3 506 76.1
Lj1g0025930 Lotus japonicus HOM05D004433 ORTHO05D005251 1.3e-210 736.9 506 76.9
C04p55760 Brassica napus HOM05D004433 ORTHO05D005251 6.6e-210 734.6 572 68.2
CsaV3_3G048450 Cucumis sativus L. HOM05D004433 ORTHO05D005251 1.1e-209 733.8 531 72.3
AT2G25870 Arabidopsis thaliana HOM05D004433 ORTHO05D005251 1.5e-209 733.4 539 70.1
AL4G17700 Arabidopsis lyrata HOM05D004433 ORTHO05D005251 2.1e-208 729.6 541 70.4
Carub.0004s0569 Capsella rubella HOM05D004433 ORTHO05D005251 2.8e-208 729.2 582 67.0
arahy.Tifrunner.gnm1.ann1.YGB7WG Arachis hypogaea HOM05D004433 ORTHO05D005251 4.7e-208 728.4 544 71.7
CARHR115360 Cardamine hirsuta HOM05D004433 ORTHO05D005251 1.8e-207 726.5 583 66.7
Actinidia14688 Actinidia chinensis HOM05D004433 ORTHO05D005251 4.0e-207 725.3 553 71.6
ATR0705G146 Amborella trichopoda HOM05D004433 ORTHO05D005251 6.8e-207 724.5 528 71.8
PSO210G3373 Papaver somniferum HOM05D004433 ORTHO05D005251 2.6e-206 722.6 543 70.5
AUR62040221 Chenopodium quinoa HOM05D004433 ORTHO05D005251 3.4e-206 722.2 505 73.1
Nitab4.5_0000318g0140 Nicotiana tabacum HOM05D004433 ORTHO05D005251 1.3e-205 720.3 538 71.4
Sc23g0005440 Simmondsia chinensis HOM05D004433 ORTHO05D005251 1.7e-205 719.9 515 71.5
Lsat_1_v5_gn_6_7781 Lactuca sativa HOM05D004433 ORTHO05D005251 2.2e-205 719.5 550 69.6
AUR62009222 Chenopodium quinoa HOM05D004433 ORTHO05D005251 5.4e-204 714.9 505 72.7
Ah.10g034740 Amaranthus hybridus HOM05D004433 ORTHO05D005251 5.0e-202 708.4 530 68.9
CDE09G0966 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 8.6e-202 707.6 546 68.3
DCAR_003083 Daucus carota HOM05D004433 ORTHO05D005251 1.2e-200 703.7 550 70.2
ECA233G5497 Erigeron canadensis HOM05D004433 ORTHO05D005251 2.1e-200 703.0 555 67.4
vmacro00182 Vaccinium macrocarpon HOM05D004433 ORTHO05D005251 1.4e-199 700.3 527 70.8
COL.COLO4_21003 Corchorus olitorius HOM05D004433 ORTHO05D005251 6.8e-199 698.0 545 69.9
Prupe.1G444500 Prunus persica HOM05D004433 ORTHO05D005251 1.7e-197 693.3 547 68.0
SGA_v2.0_scaffold103G30047 Striga asiatica HOM05D004433 ORTHO05D005251 3.7e-197 692.2 578 66.3
Peaxi162Scf00699g00520 Petunia axillaris HOM05D004433 ORTHO05D005251 3.2e-196 689.1 543 69.2
SalBow4G2164 Salvia bowleyana HOM05D004433 ORTHO05D005251 7.0e-196 688.0 545 68.6
MBI04_g07004_MAGBIO Magnolia biondii HOM05D004433 ORTHO05D005251 8.6e-194 681.0 542 67.0
FvH4_2g35230 Fragaria vesca HOM05D004433 ORTHO05D005251 1.9e-193 679.9 536 68.5
Actinidia18212 Actinidia chinensis HOM05D004433 ORTHO05D005251 8.0e-192 674.5 463 75.6
Manes.03G060700 Manihot esculenta HOM05D004433 ORTHO05D005251 2.3e-191 672.9 485 72.4
Lj7C697T10 Lonicera japonica HOM05D004433 ORTHO05D005251 5.2e-191 671.8 537 66.9
Manes.16G073200 Manihot esculenta HOM05D004433 ORTHO05D005251 2.3e-186 656.4 537 67.6
Rhsim11G0049500 Rhododendron simsii HOM05D004433 ORTHO05D005251 5.1e-186 655.2 563 64.5
FAN27G0398 Fragaria x ananassa HOM05D004433 ORTHO05D005251 4.3e-185 652.1 562 64.2
RcHm_v2.0_Chr6g0306701 Rosa chinensis HOM05D004433 ORTHO05D005251 4.0e-183 645.6 540 65.4
Sabra18G0052000 Salix brachista HOM05D004433 ORTHO05D005251 8.9e-183 644.4 555 64.1
Zm00001eb153790 Zea mays HOM05D004433 ORTHO05D005251 6.4e-181 638.3 524 62.0
EL10Ac2g03971 Beta vulgaris HOM05D004433 ORTHO05D005251 1.1e-180 637.5 505 66.9
Hund03376 Selenicereus undatus HOM05D004433 ORTHO05D005251 5.6e-177 625.2 461 69.6
PSO210G0672 Papaver somniferum HOM05D004433 ORTHO05D005251 7.8e-171 604.7 556 61.7
Glyma.17G192300 Glycine max HOM05D004433 ORTHO05D005251 1.5e-166 590.5 426 74.4
MD08G1110300 Malus domestica HOM05D004433 ORTHO05D005251 1.3e-162 577.4 441 69.4
FAN15G3540 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.1e-161 574.3 533 61.9
Dinv23396 Davidia involucrata HOM05D004433 ORTHO05D005251 5.8e-158 562.0 374 77.8
ATR1159G027 Amborella trichopoda HOM05D004433 ORTHO05D005251 7.6e-158 561.6 562 57.3
Os01g0739400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.9e-156 557.0 469 60.3
unitig_32.g11476 Utricularia gibba HOM05D004433 ORTHO05D005251 1.1e-129 468.0 526 51.7
Lj8A567T31 Lonicera japonica HOM05D004433 ORTHO05D005251 3.7e-128 463.0 347 71.5
Pp3c15_25010 Physcomitrium patens HOM05D004433 ORTHO05D005251 1.3e-125 454.5 485 51.3
Os02g0227000 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.7e-125 454.1 436 53.7
Haze_21925 Corylus avellana HOM05D004433 ORTHO05D005251 1.7e-120 437.6 342 71.6
Zm00001eb239610 Zea mays HOM05D004433 ORTHO05D005251 2.8e-120 436.8 454 49.6
Mapoly0124s0034 Marchantia polymorpha HOM05D004433 ORTHO05D005251 8.2e-120 435.3 490 49.0
Oeu008300.1 Olea europaea HOM05D004433 ORTHO05D005251 5.9e-118 429.1 507 52.1
Ciclev10010169m.g Citrus clementina HOM05D004433 ORTHO05D005251 6.1e-115 419.1 421 57.7
Cc08_g09950 Coffea canephora HOM05D004433 ORTHO05D005251 6.1e-115 419.1 349 65.6
HPP92_005557 Vanilla planifolia HOM05D004433 ORTHO05D005251 1.8e-114 417.5 414 54.8
Ca_19223_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 3.5e-110 403.3 266 80.5
CBR_g31496 Chara braunii HOM05D004433 ORTHO05D005251 8.5e-101 372.1 488 44.7
Os09g0388400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.4e-87 328.2 282 58.9
Cc08_g09960 Coffea canephora HOM05D004433 ORTHO05D005251 8.0e-83 312.4 204 77.0
HPP92_003623 Vanilla planifolia HOM05D004433 ORTHO05D005251 5.6e-76 289.7 219 69.9
Cpa.g.sc7.220 Carica papaya HOM05D004433 ORTHO05D005251 2.2e-72 277.7 173 78.6
Cpa.g.sc7.222 Carica papaya HOM05D004433 ORTHO05D005251 2.8e-67 260.8 217 65.4
SEGI_35823 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 1.4e-66 258.5 202 63.4
SEGI_12418 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 1.7e-64 251.5 278 53.2
SMO352G0038 Selaginella moellendorffii HOM05D004433 ORTHO05D005251 1.6e-62 245.0 262 48.9
PRCOL_00001006 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 4.6e-62 243.4 393 39.7
Potri.006G235301 Populus trichocarpa HOM05D004433 ORTHO05D005251 2.5e-60 237.7 177 68.4
FAN20G0434 Fragaria x ananassa HOM05D004433 ORTHO05D005251 2.0e-57 228.0 248 54.4
CDE02G1264 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 2.1e-54 218.0 147 74.1
MCO02G391 Micromonas commoda HOM05D004433 ORTHO05D005251 1.4e-50 205.3 292 43.8
Hma1.2p1_0049F.1_g028280 Hydrangea macrophylla HOM05D004433 ORTHO05D005251 3.0e-45 187.6 113 80.5
Hund19490 Selenicereus undatus HOM05D004433 ORTHO05D005251 1.9e-44 184.9 128 71.9
Ca_12764_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 1.3e-43 182.2 177 59.3
Cre06.g252150 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 3.0e-37 161.0 272 39.0
Hund19491 Selenicereus undatus HOM05D004433 ORTHO05D005251 4.3e-36 157.1 121 64.5
Oeu059683.2 Olea europaea HOM05D004433 ORTHO05D005251 5.5e-31 140.2 106 67.0
MCO10G003 Micromonas commoda HOM05D004433 ORTHO05D005251 1.2e-30 139.0 269 34.6
Gohir.A08G152250 Gossypium hirsutum HOM05D004433 ORTHO05D005251 3.9e-29 134.0 122 63.1
Cre09.g402997 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 7.6e-25 119.8 123 52.0
CDE02G2445 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 1.9e-23 115.2 95 66.3
Solyc06g011570.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 1.9e-23 115.2 112 52.7
PRCOL_00006247 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 1.2e-22 112.5 269 33.5
TAR383G0959 Trochodendron aralioides HOM05D004433 ORTHO05D005251 5.1e-21 107.1 230 37.8
Sopen06g006790 Solanum pennellii HOM05D004433 ORTHO05D005251 5.7e-20 103.6 77 67.5
VMungo1215G2735 Vigna mungo HOM05D004433 ORTHO05D005251 1.3e-19 102.4 83 59.0
Os09g0393801 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 3.7e-19 100.9 91 54.9
Lj8A567T30 Lonicera japonica HOM05D004433 ORTHO05D005251 2.4e-18 98.2 56 91.1
Os09g0393501 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 3.1e-18 97.8 91 53.8
SGA_v2.0_scaffold266G46140 Striga asiatica HOM05D004433 ORTHO05D005251 5.9e-17 93.6 57 86.0
RcHm_v2.0_Chr6g0271151 Rosa chinensis HOM05D004433 ORTHO05D005251 7.2e-15 86.7 71 62.0
HPP92_005558 Vanilla planifolia HOM05D004433 ORTHO05D005251 7.9e-14 83.2 55 76.4
RcHm_v2.0_Chr6g0310261 Rosa chinensis HOM05D004433 ORTHO05D005251 1.0e-13 82.8 71 59.2
Ca_28629_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 1.7e-08 65.5 246 26.4
Pp3s32_540 Physcomitrium patens HOM05D004878 ORTHO05D021266 3.8e-08 64.3 324 24.1
Ca_29420_v3 Cicer arietinum L. HOM05D003834 ORTHO05D044391 5.0e-08 63.9 109 37.6
TAR625G0121 Trochodendron aralioides HOM05D004433 ORTHO05D005251 3.2e-07 61.2 40 77.5
AT5G38747 Arabidopsis thaliana HOM05D004433 ORTHO05D081644 7.2e-07 60.1 58 48.3
MD15G1112400 Malus domestica HOM05D004433 ORTHO05D005251 1.6e-06 58.9 36 80.6


User provided reference genes

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