Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G2194 Cannabis sativa HOM05D001887 ORTHO05D006549 0.0e+00 1811.6 982 100.0
MD06G1046600 Malus domestica HOM05D001887 ORTHO05D006549 0.0e+00 1366.3 1063 70.6
Prupe.5G054900 Prunus persica HOM05D001887 ORTHO05D006549 0.0e+00 1352.4 1043 70.7
RcHm_v2.0_Chr7g0205791 Rosa chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1343.9 1044 71.6
CiPaw.11G072100 Carya illinoinensis HOM05D001887 ORTHO05D006549 0.0e+00 1341.6 991 72.9
Glyma.11G038500 Glycine max HOM05D001887 ORTHO05D006549 0.0e+00 1332.0 999 71.7
VMungo1215G0420 Vigna mungo HOM05D001887 ORTHO05D006549 0.0e+00 1331.6 999 72.5
Lj2g0012346 Lotus japonicus HOM05D001887 ORTHO05D006549 0.0e+00 1330.9 988 72.8
FvH4_5g20470 Fragaria vesca HOM05D001887 ORTHO05D006549 0.0e+00 1324.3 1043 70.5
Cfa012332 Carpinus fangiana HOM05D001887 ORTHO05D006549 0.0e+00 1322.0 985 71.7
QL12p008620 Quercus lobata HOM05D001887 ORTHO05D006549 0.0e+00 1321.2 982 72.4
Haze_08360 Corylus avellana HOM05D001887 ORTHO05D006549 0.0e+00 1313.1 994 70.6
FAN18G1605 Fragaria x ananassa HOM05D001887 ORTHO05D006549 0.0e+00 1307.7 1038 69.9
Manes.01G089700 Manihot esculenta HOM05D001887 ORTHO05D006549 0.0e+00 1303.5 997 72.4
Ca_24613_v3 Cicer arietinum L. HOM05D001887 ORTHO05D006549 0.0e+00 1302.7 1048 68.6
ClCG09G012670 Citrullus lanatus HOM05D001887 ORTHO05D006549 0.0e+00 1301.6 1048 68.8
Lalb_Chr09g0324141 Lupinus albus HOM05D001887 ORTHO05D006549 0.0e+00 1300.8 996 71.2
arahy.Tifrunner.gnm1.ann1.B9CQCD Arachis hypogaea HOM05D001887 ORTHO05D006549 0.0e+00 1293.1 991 71.1
arahy.Tifrunner.gnm1.ann1.HW9JRE Arachis hypogaea HOM05D001887 ORTHO05D006549 0.0e+00 1293.1 991 71.1
Actinidia02198 Actinidia chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1291.2 999 70.2
TWI81G0509 Tripterygium wilfordii HOM05D001887 ORTHO05D006549 0.0e+00 1290.8 992 70.8
CsaV3_3G049790 Cucumis sativus L. HOM05D001887 ORTHO05D006549 0.0e+00 1288.1 1043 68.4
Potri.001G150400 Populus trichocarpa HOM05D001887 ORTHO05D006549 0.0e+00 1281.2 1001 70.2
Medtr5g013480 Medicago truncatula HOM05D001887 ORTHO05D006549 0.0e+00 1280.0 997 70.2
Ciclev10024418m.g Citrus clementina HOM05D001887 ORTHO05D006549 0.0e+00 1277.7 998 71.3
TAR636G0264 Trochodendron aralioides HOM05D001887 ORTHO05D006549 0.0e+00 1276.9 996 70.7
Sed0013079 Sechium edule HOM05D001887 ORTHO05D006549 0.0e+00 1275.4 1040 68.3
GSVIVG01002051001 Vitis vinifera HOM05D001887 ORTHO05D006549 0.0e+00 1271.1 994 71.6
MELO3C003338.2 Cucumis melo HOM05D001887 ORTHO05D006549 0.0e+00 1270.0 1036 68.0
Thecc.03G239300 Theobroma cacao HOM05D001887 ORTHO05D006549 0.0e+00 1270.0 993 70.2
PGR042G1059 Punica granatum HOM05D001887 ORTHO05D006549 0.0e+00 1260.0 994 70.2
AUR62007171 Chenopodium quinoa HOM05D001887 ORTHO05D006549 0.0e+00 1257.3 988 68.8
Peaxi162Scf00301g00615 Petunia axillaris HOM05D001887 ORTHO05D006549 0.0e+00 1250.0 996 69.0
Lj8C277T15 Lonicera japonica HOM05D001887 ORTHO05D006549 0.0e+00 1244.6 1012 68.0
Sopen08g026310 Solanum pennellii HOM05D001887 ORTHO05D006549 0.0e+00 1243.8 992 68.3
THA.LOC104807928 Tarenaya hassleriana HOM05D001887 ORTHO05D006549 0.0e+00 1243.0 993 68.1
PGSC0003DMG400026214 Solanum tuberosum HOM05D001887 ORTHO05D006549 0.0e+00 1241.5 997 68.4
CAN.G572.14 Capsicum annuum HOM05D001887 ORTHO05D006549 0.0e+00 1240.3 992 68.8
vmacro00747 Vaccinium macrocarpon HOM05D001887 ORTHO05D006549 0.0e+00 1239.9 998 67.7
Solyc08g077800.4 Solanum lycopersicum HOM05D001887 ORTHO05D006549 0.0e+00 1239.6 992 68.5
Nitab4.5_0004227g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 0.0e+00 1238.4 993 69.3
HanXRQChr01g0016001 Helianthus annuus HOM05D001887 ORTHO05D006549 0.0e+00 1236.9 996 67.2
Hund14477 Selenicereus undatus HOM05D001887 ORTHO05D006549 0.0e+00 1236.5 1011 68.1
Gohir.D08G182700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 0.0e+00 1233.4 986 69.4
Carub.0007s3432 Capsella rubella HOM05D001887 ORTHO05D006549 0.0e+00 1233.0 985 67.8
Gorai.004G191700 Gossypium raimondii HOM05D001887 ORTHO05D006549 0.0e+00 1233.0 987 69.4
Nn1g00744 Nelumbo nucifera HOM05D001887 ORTHO05D006549 0.0e+00 1232.2 1019 67.5
Aqoxy7G00853 Aquilegia oxysepala HOM05D001887 ORTHO05D006549 0.0e+00 1231.1 990 68.7
Nitab4.5_0003335g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 0.0e+00 1229.5 993 68.8
BcaC02g08980 Brassica carinata HOM05D001887 ORTHO05D006549 0.0e+00 1228.8 992 67.4
BolC4t26415H Brassica oleracea HOM05D001887 ORTHO05D006549 0.0e+00 1228.8 992 67.4
C04p48230 Brassica napus HOM05D001887 ORTHO05D006549 0.0e+00 1227.6 992 67.4
Eucgr.E00349 Eucalyptus grandis HOM05D001887 ORTHO05D006549 0.0e+00 1223.0 991 67.4
A04p14190 Brassica napus HOM05D001887 ORTHO05D006549 0.0e+00 1222.6 992 67.3
ECA246G2103 Erigeron canadensis HOM05D001887 ORTHO05D006549 0.0e+00 1221.8 995 66.6
BraA04t17079Z Brassica rapa HOM05D001887 ORTHO05D006549 0.0e+00 1221.1 992 67.2
BcaB06g27602 Brassica carinata HOM05D001887 ORTHO05D006549 0.0e+00 1218.0 994 67.1
SpUn0010_0230 Schrenkiella parvula HOM05D001887 ORTHO05D006549 0.0e+00 1218.0 985 67.1
Thhalv10027633m.g Eutrema salsugineum HOM05D001887 ORTHO05D006549 0.0e+00 1217.6 985 67.0
Cc08_g11250 Coffea canephora HOM05D001887 ORTHO05D006549 0.0e+00 1216.8 989 66.5
AL7G48280 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 0.0e+00 1216.4 985 67.6
MBI04_g38561_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 0.0e+00 1214.9 1038 66.5
AL7G48350 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 0.0e+00 1211.8 992 67.4
Sp7g00750 Schrenkiella parvula HOM05D001887 ORTHO05D006549 0.0e+00 1210.7 985 67.1
AT5G41150 Arabidopsis thaliana HOM05D001887 ORTHO05D006549 0.0e+00 1209.1 986 66.5
CARHR213220 Cardamine hirsuta HOM05D001887 ORTHO05D006549 0.0e+00 1206.8 985 66.8
Migut.E01262 Erythranthe guttata HOM05D001887 ORTHO05D006549 0.0e+00 1196.8 983 64.8
Lsat_1_v5_gn_3_15381 Lactuca sativa HOM05D001887 ORTHO05D006549 0.0e+00 1195.3 1016 64.5
Migut.E01632 Erythranthe guttata HOM05D001887 ORTHO05D006549 0.0e+00 1194.5 983 64.8
SGA_v2.0_scaffold6G03161 Striga asiatica HOM05D001887 ORTHO05D006549 0.0e+00 1192.2 1016 63.9
PSO675G3297 Papaver somniferum HOM05D001887 ORTHO05D006549 0.0e+00 1187.9 997 66.7
Rhsim07G0136100 Rhododendron simsii HOM05D001887 ORTHO05D006549 0.0e+00 1187.9 1168 59.0
Aa31LG9G15130 Aethionema arabicum HOM05D001887 ORTHO05D006549 0.0e+00 1185.2 988 65.2
Ah.07g199260 Amaranthus hybridus HOM05D001887 ORTHO05D006549 0.0e+00 1184.9 990 66.8
EL10Ac5g12260 Beta vulgaris HOM05D001887 ORTHO05D006549 0.0e+00 1181.0 1045 64.4
Duzib205G1274 Durio zibethinus HOM05D001887 ORTHO05D006549 0.0e+00 1176.0 991 66.2
DCAR_000656 Daucus carota HOM05D001887 ORTHO05D006549 0.0e+00 1164.4 977 64.1
AUR62018833 Chenopodium quinoa HOM05D001887 ORTHO05D006549 0.0e+00 1158.7 984 65.5
unitig_699.g19770 Utricularia gibba HOM05D001887 ORTHO05D006549 0.0e+00 1124.4 983 63.2
Gohir.A08G162700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 0.0e+00 1108.2 916 69.0
CSS0023599 Camellia sinensis var. sinensis HOM05D001887 ORTHO05D006549 0.0e+00 1104.4 833 72.3
HPP92_001389 Vanilla planifolia HOM05D001887 ORTHO05D006549 0.0e+00 1094.3 1000 59.4
FAN13G0006 Fragaria x ananassa HOM05D001887 ORTHO05D006549 0.0e+00 1088.6 887 69.3
COL.COLO4_06683 Corchorus olitorius HOM05D001887 ORTHO05D006549 0.0e+00 1084.7 835 71.9
Dinv25138 Davidia involucrata HOM05D001887 ORTHO05D006549 0.0e+00 1077.8 852 70.5
Zm00001eb208390 Zea mays HOM05D001887 ORTHO05D006549 3.4e-311 1071.6 997 59.6
CDE02G0676 Ceratophyllum demersum HOM05D001887 ORTHO05D006549 2.3e-310 1068.9 1001 61.3
Os03g0100400 Oryza sativa ssp. japonica HOM05D001887 ORTHO05D006549 3.6e-308 1061.6 1007 58.3
MSTRG.13777 Avicennia marina HOM05D001887 ORTHO05D006549 1.5e-285 986.5 986 56.7
Oeu028057.3 Olea europaea HOM05D001887 ORTHO05D006549 1.8e-278 963.0 994 57.8
AagrBONN_evm.TU.Sc2ySwM_344.3532 Anthoceros agrestis HOM05D001887 ORTHO05D006549 1.0e-273 947.2 1006 54.7
Psat2g175720 Pisum sativum HOM05D001887 ORTHO05D006549 8.5e-273 944.1 992 56.6
Mapoly0007s0092 Marchantia polymorpha HOM05D001887 ORTHO05D006549 7.9e-271 937.6 1069 52.1
Pp3c18_11670 Physcomitrium patens HOM05D001887 ORTHO05D006549 5.3e-267 924.9 1060 51.9
SMO118G0017 Selaginella moellendorffii HOM05D001887 ORTHO05D006549 1.4e-259 900.2 1001 50.3
Sc01g0007960 Simmondsia chinensis HOM05D001887 ORTHO05D006549 7.2e-248 861.3 765 63.4
Phvul.002G001900 Phaseolus vulgaris HOM05D001887 ORTHO05D006549 2.1e-223 780.0 603 69.2
SalBow1G4075 Salvia bowleyana HOM05D001887 ORTHO05D006549 4.6e-210 735.7 718 57.2
Hma1.2p1_3159F.1_g333410 Hydrangea macrophylla HOM05D001887 ORTHO05D006549 8.1e-207 724.9 815 54.1
ATR0665G232 Amborella trichopoda HOM05D001887 ORTHO05D006549 3.8e-204 716.1 606 65.8
MBI04_g36289_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 3.5e-202 709.5 955 48.3
Sabra01G0120200 Salix brachista HOM05D001887 ORTHO05D006549 6.4e-196 688.7 557 68.0
TPR.G31429 Trifolium pratense HOM05D001887 ORTHO05D006549 2.9e-180 636.7 683 56.8
SEGI_01687 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 5.3e-166 589.3 555 62.0
MCO16G346 Micromonas commoda HOM05D001887 ORTHO05D006549 1.3e-156 558.1 992 35.2
CBR_g39228 Chara braunii HOM05D001887 ORTHO05D006549 5.0e-132 476.5 367 64.9
SHI07797 Sapria himalayana HOM05D001887 ORTHO05D006549 5.2e-129 466.5 389 63.2
Cpa.g.c28699.1 Carica papaya HOM05D001887 ORTHO05D006549 1.7e-124 451.4 266 85.3
SalBow1G0188 Salvia bowleyana HOM05D001887 ORTHO05D006549 1.5e-123 448.4 278 80.6
TPR.G31432 Trifolium pratense HOM05D001887 ORTHO05D006549 1.2e-120 438.7 277 81.2
HPP92_012638 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.2e-120 438.7 305 70.2
Cfa026920 Carpinus fangiana HOM05D001887 ORTHO05D006549 1.4e-113 415.2 1021 31.0
SEGI_02234 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 7.5e-112 409.5 361 61.2
Cpa.g.sc98.72 Carica papaya HOM05D001887 ORTHO05D006549 2.7e-109 401.0 289 73.4
ATR0107G001 Amborella trichopoda HOM05D001887 ORTHO05D006549 3.1e-105 387.5 361 59.0
Cre06.g311400 Chlamydomonas reinhardtii HOM05D001887 ORTHO05D006549 4.4e-104 383.6 1273 29.9
PRCOL_00000830 Prasinoderma coloniale HOM05D001887 ORTHO05D006549 3.7e-103 380.6 939 34.1
CBR_g69645 Chara braunii HOM05D001887 ORTHO05D006549 3.3e-91 340.9 711 33.5
HPP92_013056 Vanilla planifolia HOM05D001887 ORTHO05D006549 3.3e-83 314.3 291 58.8
Atru.chr9.1200 Acer truncatum HOM05D001887 ORTHO05D006549 1.9e-75 288.5 168 85.7
Psat5g140400 Pisum sativum HOM05D001887 ORTHO05D006549 3.3e-75 287.7 222 73.0
HPP92_028226 Vanilla planifolia HOM05D001887 ORTHO05D006549 4.2e-70 270.8 255 59.2
HPP92_027917 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.2e-69 269.2 201 67.7
GSVIVG01002647001 Vitis vinifera HOM05D001887 ORTHO05D006549 9.6e-67 259.6 145 88.3
Atru.chr9.1202 Acer truncatum HOM05D001887 ORTHO05D006549 9.6e-59 233.0 150 80.7
Psat4g195160 Pisum sativum HOM05D000527 ORTHO05D000559 1.6e-58 232.3 181 70.2
HPP92_000025 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.1e-57 229.6 144 75.0
HPP92_000026 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.2e-56 226.1 203 61.1
HPP92_028027 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.4e-49 202.6 129 74.4
Atru.chr9.1201 Acer truncatum HOM05D001887 ORTHO05D006549 2.0e-48 198.7 244 49.6
Sed0025805 Sechium edule HOM05D001887 ORTHO05D006549 4.5e-48 197.6 214 56.1
HPP92_002782 Vanilla planifolia HOM05D001887 ORTHO05D006549 6.5e-47 193.7 129 71.3
Glyma.01G204533 Glycine max HOM05D001887 ORTHO05D006549 2.7e-45 188.3 105 86.7
Atru.chr9.1203 Acer truncatum HOM05D001887 ORTHO05D006549 5.7e-43 180.6 98 88.8
HPP92_028028 Vanilla planifolia HOM05D001887 ORTHO05D006549 2.0e-40 172.2 131 66.4
Psat5g084960 Pisum sativum HOM05D001887 ORTHO05D006549 3.4e-40 171.4 161 59.6
MD04G1054800 Malus domestica HOM05D001887 ORTHO05D006549 7.2e-38 163.7 123 70.7
HPP92_028029 Vanilla planifolia HOM05D001887 ORTHO05D006549 5.7e-35 154.1 109 68.8
Psat7g123840 Pisum sativum HOM05D001887 ORTHO05D006549 2.2e-31 142.1 202 49.5
AagrBONN_evm.TU.Sc2ySwM_362.220 Anthoceros agrestis HOM05D001887 ORTHO05D006549 5.2e-28 131.0 85 71.8
AagrBONN_evm.TU.Sc2ySwM_344.3537 Anthoceros agrestis HOM05D001887 ORTHO05D006549 1.4e-25 122.9 165 41.2
Psat3g155360 Pisum sativum HOM05D000527 ORTHO05D325619 1.1e-22 113.2 85 64.7
Psat0s3354g0040 Pisum sativum HOM05D001887 ORTHO05D006549 1.4e-20 106.3 135 49.6
CDE11G1156 Ceratophyllum demersum HOM05D001409 ORTHO05D129850 8.5e-15 87.0 42 95.2


User provided reference genes

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