Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G1878 Cannabis sativa HOM05D004433 ORTHO05D005251 0.0e+00 1142.9 595 100.0
CANSAT21G2561 Cannabis sativa HOM05D004433 ORTHO05D005251 1.1e-299 1032.7 548 98.7
FvH4_2g35220 Fragaria vesca HOM05D004433 ORTHO05D005251 1.1e-238 830.1 538 79.7
RcHm_v2.0_Chr6g0306711 Rosa chinensis HOM05D004433 ORTHO05D005251 8.6e-236 820.5 538 78.8
FAN15G1676 Fragaria x ananassa HOM05D004433 ORTHO05D005251 7.2e-235 817.4 556 76.6
Cfa013388 Carpinus fangiana HOM05D004433 ORTHO05D005251 3.0e-233 812.0 594 75.1
Ciclev10007803m.g Citrus clementina HOM05D004433 ORTHO05D005251 2.0e-229 799.3 588 72.3
Atru.chr7.2050 Acer truncatum HOM05D004433 ORTHO05D005251 2.9e-228 795.4 591 73.4
Prupe.1G444400 Prunus persica HOM05D004433 ORTHO05D005251 1.0e-225 786.9 597 70.9
CiPaw.08G027400 Carya illinoinensis HOM05D004433 ORTHO05D005251 1.8e-225 786.2 590 72.0
TAR639G0002 Trochodendron aralioides HOM05D004433 ORTHO05D005251 2.3e-225 785.8 546 75.1
FAN20G2992 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.5e-224 783.1 545 75.6
TWI34G1917 Tripterygium wilfordii HOM05D004433 ORTHO05D005251 1.5e-224 783.1 594 71.2
Sopen08g019860 Solanum pennellii HOM05D004433 ORTHO05D005251 2.9e-223 778.9 597 69.5
Eucgr.C00613 Eucalyptus grandis HOM05D004433 ORTHO05D005251 3.7e-223 778.5 581 71.4
arahy.Tifrunner.gnm1.ann1.AK26AV Arachis hypogaea HOM05D004433 ORTHO05D005251 4.9e-223 778.1 578 72.1
CAN.G1444.6 Capsicum annuum HOM05D004433 ORTHO05D005251 6.4e-223 777.7 606 69.5
Glyma.14G144100 Glycine max HOM05D004433 ORTHO05D005251 1.1e-222 776.9 540 76.1
Nn8g39044 Nelumbo nucifera HOM05D004433 ORTHO05D005251 1.9e-222 776.2 594 72.6
PGR031G3150 Punica granatum HOM05D004433 ORTHO05D005251 1.9e-222 776.2 598 70.6
QL12p040912 Quercus lobata HOM05D004433 ORTHO05D005251 1.9e-222 776.2 510 77.6
Thecc.09G048300 Theobroma cacao HOM05D004433 ORTHO05D005251 4.1e-222 775.0 539 75.5
GSVIVG01035316001 Vitis vinifera HOM05D004433 ORTHO05D005251 5.4e-222 774.6 580 71.2
Solyc08g066180.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 7.0e-222 774.2 597 69.2
CSS0005257 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 4.6e-221 771.5 594 70.5
CSS0005508 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 4.6e-221 771.5 594 70.5
Ca_03360_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 4.6e-221 771.5 572 73.1
ClCG11G015050 Citrullus lanatus HOM05D004433 ORTHO05D005251 6.0e-221 771.2 595 70.8
Sed0005675 Sechium edule HOM05D004433 ORTHO05D005251 6.0e-221 771.2 530 75.3
Nitab4.5_0008242g0010 Nicotiana tabacum HOM05D004433 ORTHO05D005251 1.0e-220 770.4 584 70.5
Potri.018G057500 Populus trichocarpa HOM05D004433 ORTHO05D005251 1.7e-220 769.6 596 70.3
MSTRG.25921 Avicennia marina HOM05D004433 ORTHO05D005251 3.9e-220 768.5 598 68.2
MD08G1110200 Malus domestica HOM05D004433 ORTHO05D005251 8.6e-220 767.3 599 70.3
Phvul.001G078300 Phaseolus vulgaris HOM05D004433 ORTHO05D005251 8.6e-220 767.3 583 71.2
Gohir.D06G090400 Gossypium hirsutum HOM05D004433 ORTHO05D005251 2.1e-218 762.7 543 74.6
Medtr1g007320 Medicago truncatula HOM05D004433 ORTHO05D005251 2.8e-218 762.3 547 74.8
Dinv27935 Davidia involucrata HOM05D004433 ORTHO05D005251 8.0e-218 760.8 542 74.7
Duzib168G1809 Durio zibethinus HOM05D004433 ORTHO05D005251 2.3e-217 759.2 572 72.0
Aqoxy5G01364 Aquilegia oxysepala HOM05D004433 ORTHO05D005251 5.2e-217 758.1 539 72.9
Duzib150G0295 Durio zibethinus HOM05D004433 ORTHO05D005251 5.2e-217 758.1 590 70.0
Aa31LG5G9810 Aethionema arabicum HOM05D004433 ORTHO05D005251 6.8e-217 757.7 581 70.1
FAN27G1484 Fragaria x ananassa HOM05D004433 ORTHO05D005251 8.9e-217 757.3 576 71.0
Lalb_Chr22g0360911 Lupinus albus HOM05D004433 ORTHO05D005251 8.9e-217 757.3 580 71.6
MELO3C003474.2 Cucumis melo HOM05D004433 ORTHO05D005251 1.2e-216 756.9 596 69.0
VMungo1383G1648 Vigna mungo HOM05D004433 ORTHO05D005251 1.2e-216 756.9 535 74.8
Gohir.A06G091200 Gossypium hirsutum HOM05D004433 ORTHO05D005251 3.4e-216 755.4 587 70.4
Oeu019243.1 Olea europaea HOM05D004433 ORTHO05D005251 3.4e-216 755.4 511 76.3
THA.LOC104818595 Tarenaya hassleriana HOM05D004433 ORTHO05D005251 7.5e-216 754.2 541 71.5
BraA04t17590Z Brassica rapa HOM05D004433 ORTHO05D005251 2.9e-215 752.3 543 72.0
Thhalv10001936m.g Eutrema salsugineum HOM05D004433 ORTHO05D005251 4.9e-215 751.5 541 72.3
Sp4g05710 Schrenkiella parvula HOM05D004433 ORTHO05D005251 1.4e-214 750.0 588 68.5
A04p20080 Brassica napus HOM05D004433 ORTHO05D005251 1.9e-214 749.6 543 72.0
HanXRQChr02g0047921 Helianthus annuus HOM05D004433 ORTHO05D005251 3.2e-214 748.8 592 68.4
CsaV3_3G048450 Cucumis sativus L. HOM05D004433 ORTHO05D005251 4.1e-214 748.4 532 73.1
Gorai.010G104100 Gossypium raimondii HOM05D004433 ORTHO05D005251 4.1e-214 748.4 569 71.4
Psat6g036080 Pisum sativum HOM05D004433 ORTHO05D005251 5.4e-214 748.0 583 70.0
TPR.G24519 Trifolium pratense HOM05D004433 ORTHO05D005251 9.2e-214 747.3 506 76.5
Lj1g0025930 Lotus japonicus HOM05D004433 ORTHO05D005251 1.2e-213 746.9 506 77.3
BcaB06g29637 Brassica carinata HOM05D004433 ORTHO05D005251 1.6e-213 746.5 542 71.8
BolC4t27102H Brassica oleracea HOM05D004433 ORTHO05D005251 1.6e-213 746.5 542 71.8
Migut.A00179 Erythranthe guttata HOM05D004433 ORTHO05D005251 2.7e-213 745.7 602 67.8
BcaB06g29638 Brassica carinata HOM05D004433 ORTHO05D005251 1.7e-212 743.0 597 66.8
AT2G25870 Arabidopsis thaliana HOM05D004433 ORTHO05D005251 2.3e-212 742.7 580 67.9
C04p55760 Brassica napus HOM05D004433 ORTHO05D005251 2.3e-212 742.7 542 71.4
AL4G17700 Arabidopsis lyrata HOM05D004433 ORTHO05D005251 6.6e-212 741.1 541 71.2
Carub.0004s0569 Capsella rubella HOM05D004433 ORTHO05D005251 8.6e-212 740.7 579 67.7
CARHR115360 Cardamine hirsuta HOM05D004433 ORTHO05D005251 4.3e-211 738.4 586 67.4
arahy.Tifrunner.gnm1.ann1.YGB7WG Arachis hypogaea HOM05D004433 ORTHO05D005251 9.5e-211 737.3 545 71.9
Actinidia14688 Actinidia chinensis HOM05D004433 ORTHO05D005251 3.6e-210 735.3 614 67.8
Nitab4.5_0000318g0140 Nicotiana tabacum HOM05D004433 ORTHO05D005251 8.1e-210 734.2 572 68.7
AUR62040221 Chenopodium quinoa HOM05D004433 ORTHO05D005251 3.1e-209 732.3 594 66.2
PSO210G3373 Papaver somniferum HOM05D004433 ORTHO05D005251 1.2e-208 730.3 569 68.4
ATR0705G146 Amborella trichopoda HOM05D004433 ORTHO05D005251 2.0e-208 729.6 518 72.4
Sc23g0005440 Simmondsia chinensis HOM05D004433 ORTHO05D005251 9.9e-208 727.2 583 66.9
Lsat_1_v5_gn_6_7781 Lactuca sativa HOM05D004433 ORTHO05D005251 2.2e-207 726.1 537 70.8
AUR62009222 Chenopodium quinoa HOM05D004433 ORTHO05D005251 1.9e-206 723.0 594 65.7
CDE09G0966 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 6.6e-204 714.5 596 64.9
DCAR_003083 Daucus carota HOM05D004433 ORTHO05D005251 2.5e-203 712.6 589 67.4
ECA233G5497 Erigeron canadensis HOM05D004433 ORTHO05D005251 3.3e-203 712.2 571 66.5
Ah.10g034740 Amaranthus hybridus HOM05D004433 ORTHO05D005251 1.6e-202 709.9 597 64.5
vmacro00182 Vaccinium macrocarpon HOM05D004433 ORTHO05D005251 4.7e-202 708.4 518 71.6
Peaxi162Scf00699g00520 Petunia axillaris HOM05D004433 ORTHO05D005251 1.5e-200 703.4 602 65.8
SGA_v2.0_scaffold103G30047 Striga asiatica HOM05D004433 ORTHO05D005251 4.4e-200 701.8 578 66.6
Prupe.1G444500 Prunus persica HOM05D004433 ORTHO05D005251 7.6e-200 701.0 600 65.7
COL.COLO4_21003 Corchorus olitorius HOM05D004433 ORTHO05D005251 2.9e-199 699.1 547 70.2
SalBow4G2164 Salvia bowleyana HOM05D004433 ORTHO05D005251 1.9e-198 696.4 589 65.5
FvH4_2g35230 Fragaria vesca HOM05D004433 ORTHO05D005251 3.0e-196 689.1 537 68.7
MBI04_g07004_MAGBIO Magnolia biondii HOM05D004433 ORTHO05D005251 3.3e-195 685.6 591 63.3
Actinidia18212 Actinidia chinensis HOM05D004433 ORTHO05D005251 7.3e-195 684.5 463 76.0
Manes.03G060700 Manihot esculenta HOM05D004433 ORTHO05D005251 1.1e-193 680.6 511 70.3
Lj7C697T10 Lonicera japonica HOM05D004433 ORTHO05D005251 1.5e-192 676.8 538 66.5
Manes.16G073200 Manihot esculenta HOM05D004433 ORTHO05D005251 1.7e-191 673.3 589 65.2
Rhsim11G0049500 Rhododendron simsii HOM05D004433 ORTHO05D005251 6.6e-188 661.4 563 64.5
FAN27G0398 Fragaria x ananassa HOM05D004433 ORTHO05D005251 8.7e-188 661.0 563 64.5
Sabra18G0052000 Salix brachista HOM05D004433 ORTHO05D005251 8.1e-186 654.4 555 64.5
EL10Ac2g03971 Beta vulgaris HOM05D004433 ORTHO05D005251 2.6e-184 649.4 591 61.4
RcHm_v2.0_Chr6g0306701 Rosa chinensis HOM05D004433 ORTHO05D005251 2.6e-184 649.4 541 65.1
Zm00001eb153790 Zea mays HOM05D004433 ORTHO05D005251 1.1e-182 644.0 524 62.0
Hund03376 Selenicereus undatus HOM05D004433 ORTHO05D005251 1.5e-179 633.6 461 69.8
PSO210G0672 Papaver somniferum HOM05D004433 ORTHO05D005251 1.3e-172 610.5 571 60.4
Glyma.17G192300 Glycine max HOM05D004433 ORTHO05D005251 3.1e-169 599.4 474 70.3
FAN15G3540 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.3e-164 583.9 533 62.3
MD08G1110300 Malus domestica HOM05D004433 ORTHO05D005251 3.0e-164 582.8 441 69.2
Dinv23396 Davidia involucrata HOM05D004433 ORTHO05D005251 8.2e-162 574.7 378 78.0
ATR1159G027 Amborella trichopoda HOM05D004433 ORTHO05D005251 3.4e-160 569.3 562 57.5
Os01g0739400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 7.2e-158 561.6 469 60.3
unitig_32.g11476 Utricularia gibba HOM05D004433 ORTHO05D005251 2.0e-131 473.8 524 52.1
Lj8A567T31 Lonicera japonica HOM05D004433 ORTHO05D005251 7.5e-131 471.9 347 72.0
Pp3c15_25010 Physcomitrium patens HOM05D004433 ORTHO05D005251 1.0e-127 461.5 485 51.5
Os02g0227000 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 2.9e-127 459.9 436 53.7
Haze_21925 Corylus avellana HOM05D004433 ORTHO05D005251 6.3e-122 442.2 387 68.0
Mapoly0124s0034 Marchantia polymorpha HOM05D004433 ORTHO05D005251 8.3e-122 441.8 490 49.0
Oeu008300.1 Olea europaea HOM05D004433 ORTHO05D005251 1.8e-121 440.7 507 52.7
Zm00001eb239610 Zea mays HOM05D004433 ORTHO05D005251 5.4e-121 439.1 485 48.2
Ciclev10010169m.g Citrus clementina HOM05D004433 ORTHO05D005251 1.5e-118 431.0 461 55.5
Cc08_g09950 Coffea canephora HOM05D004433 ORTHO05D005251 1.4e-116 424.5 400 61.2
HPP92_005557 Vanilla planifolia HOM05D004433 ORTHO05D005251 2.6e-115 420.2 473 51.2
Ca_19223_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 5.0e-111 406.0 266 80.8
CBR_g31496 Chara braunii HOM05D004433 ORTHO05D005251 5.6e-102 375.9 488 44.1
Os09g0388400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 7.1e-89 332.4 282 59.2
Cc08_g09960 Coffea canephora HOM05D004433 ORTHO05D005251 4.7e-85 319.7 204 77.5
HPP92_003623 Vanilla planifolia HOM05D004433 ORTHO05D005251 8.1e-77 292.4 219 70.3
Cpa.g.sc7.220 Carica papaya HOM05D004433 ORTHO05D005251 9.9e-75 285.4 173 79.2
SEGI_35823 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 8.1e-69 265.8 202 63.9
Cpa.g.sc7.222 Carica papaya HOM05D004433 ORTHO05D005251 2.2e-66 257.7 226 65.0
SMO352G0038 Selaginella moellendorffii HOM05D004433 ORTHO05D005251 5.5e-65 253.1 262 49.2
SEGI_12418 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 3.5e-64 250.4 278 53.2
PRCOL_00001006 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 2.3e-63 247.7 393 39.9
Potri.006G235301 Populus trichocarpa HOM05D004433 ORTHO05D005251 1.6e-61 241.5 178 70.2
FAN20G0434 Fragaria x ananassa HOM05D004433 ORTHO05D005251 2.5e-57 227.6 243 55.6
CDE02G1264 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 8.7e-55 219.2 147 74.8
MCO02G391 Micromonas commoda HOM05D004433 ORTHO05D005251 2.4e-52 211.1 292 43.8
Ca_12764_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 7.4e-46 189.5 177 59.9
Hma1.2p1_0049F.1_g028280 Hydrangea macrophylla HOM05D004433 ORTHO05D005251 2.8e-45 187.6 113 80.5
Hund19490 Selenicereus undatus HOM05D004433 ORTHO05D005251 1.8e-44 184.9 128 71.9
Cre06.g252150 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 8.8e-39 166.0 271 39.1
Hund19491 Selenicereus undatus HOM05D004433 ORTHO05D005251 4.5e-35 153.7 167 53.3
MCO10G003 Micromonas commoda HOM05D004433 ORTHO05D005251 2.3e-31 141.4 270 35.2
Oeu059683.2 Olea europaea HOM05D004433 ORTHO05D005251 5.2e-31 140.2 106 67.0
Gohir.A08G152250 Gossypium hirsutum HOM05D004433 ORTHO05D005251 2.2e-29 134.8 122 63.1
Cre09.g402997 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 5.5e-25 120.2 123 52.0
CDE02G2445 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 1.8e-23 115.2 95 66.3
Solyc06g011570.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 1.8e-23 115.2 112 52.7
PRCOL_00006247 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 3.0e-23 114.4 267 33.3
TAR383G0959 Trochodendron aralioides HOM05D004433 ORTHO05D005251 1.3e-21 109.0 233 37.3
VMungo1215G2735 Vigna mungo HOM05D004433 ORTHO05D005251 4.8e-21 107.1 83 59.0
Sopen06g006790 Solanum pennellii HOM05D004433 ORTHO05D005251 5.3e-20 103.6 77 67.5
Os09g0393801 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 3.5e-19 100.9 91 54.9
Lj8A567T30 Lonicera japonica HOM05D004433 ORTHO05D005251 2.2e-18 98.2 56 91.1
Os09g0393501 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 2.9e-18 97.8 91 53.8
SGA_v2.0_scaffold266G46140 Striga asiatica HOM05D004433 ORTHO05D005251 5.5e-17 93.6 57 86.0
RcHm_v2.0_Chr6g0271151 Rosa chinensis HOM05D004433 ORTHO05D005251 6.8e-15 86.7 71 62.0
HPP92_005558 Vanilla planifolia HOM05D004433 ORTHO05D005251 7.5e-14 83.2 55 76.4
RcHm_v2.0_Chr6g0310261 Rosa chinensis HOM05D004433 ORTHO05D005251 9.8e-14 82.8 71 59.2
Ca_28629_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 4.2e-09 67.4 241 25.7
Pp3s32_540 Physcomitrium patens HOM05D004878 ORTHO05D021266 5.5e-09 67.0 324 24.1
Ca_29420_v3 Cicer arietinum L. HOM05D003834 ORTHO05D044391 4.7e-08 63.9 109 37.6
AT5G38747 Arabidopsis thaliana HOM05D004433 ORTHO05D081644 8.0e-08 63.2 59 49.2
TAR625G0121 Trochodendron aralioides HOM05D004433 ORTHO05D005251 3.0e-07 61.2 40 77.5
MD15G1112400 Malus domestica HOM05D004433 ORTHO05D005251 1.5e-06 58.9 36 80.6


User provided reference genes

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