Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G1202 Cannabis sativa HOM05D005275 ORTHO05D006435 1.3e-117 426.4 220 100.0
CiPaw.06G045000 Carya illinoinensis HOM05D005275 ORTHO05D006435 1.2e-89 333.6 219 76.7
RcHm_v2.0_Chr1g0381511 Rosa chinensis HOM05D005275 ORTHO05D006435 4.6e-86 321.6 223 75.8
Duzib114G0832 Durio zibethinus HOM05D005275 ORTHO05D006435 6.0e-86 321.2 220 74.5
Cfa016214 Carpinus fangiana HOM05D005275 ORTHO05D006435 1.8e-85 319.7 220 72.7
FAN10G0352 Fragaria x ananassa HOM05D005275 ORTHO05D006435 8.7e-85 317.4 219 73.5
Cpa.g.sc69.87 Carica papaya HOM05D005275 ORTHO05D006435 1.5e-84 316.6 221 74.2
ClCG05G009030 Citrullus lanatus HOM05D005275 ORTHO05D006435 1.5e-84 316.6 220 75.9
Sed0020778 Sechium edule HOM05D005275 ORTHO05D006435 1.9e-84 316.2 220 74.5
QL09p007976 Quercus lobata HOM05D005275 ORTHO05D006435 2.5e-84 315.8 219 71.2
FAN01G0712 Fragaria x ananassa HOM05D000442 ORTHO05D007032 6.2e-83 311.2 214 73.8
FAN10G2096 Fragaria x ananassa HOM05D000442 ORTHO05D007032 6.2e-83 311.2 218 73.4
PGR042G0357 Punica granatum HOM05D005275 ORTHO05D006435 6.2e-83 311.2 220 73.2
COL.COLO4_38546 Corchorus olitorius HOM05D005275 ORTHO05D006435 1.8e-82 309.7 217 72.4
CsaV3_3G019750 Cucumis sativus L. HOM05D005275 ORTHO05D006435 4.0e-82 308.5 220 73.6
Prupe.2G313400 Prunus persica HOM05D005275 ORTHO05D006435 9.0e-82 307.4 222 71.6
Gohir.A05G287800 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.6e-81 305.8 221 72.9
Manes.01G140200 Manihot esculenta HOM05D005275 ORTHO05D006435 2.6e-81 305.8 220 72.3
Eucgr.H01489 Eucalyptus grandis HOM05D005275 ORTHO05D006435 7.6e-81 304.3 220 72.7
Sed0013694 Sechium edule HOM05D005275 ORTHO05D006435 1.3e-80 303.5 220 70.9
TWI39G0072 Tripterygium wilfordii HOM05D005275 ORTHO05D006435 3.8e-80 302.0 220 72.3
Haze_00229 Corylus avellana HOM05D005275 ORTHO05D006435 4.9e-80 301.6 219 70.3
Gohir.D05G289000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 6.5e-80 301.2 221 71.9
Gorai.009G304100 Gossypium raimondii HOM05D005275 ORTHO05D006435 6.5e-80 301.2 221 71.9
Gohir.A10G201500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.5e-79 298.1 221 71.0
Gohir.A11G223000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.5e-79 298.1 221 71.0
Gohir.A12G028500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.5e-79 298.1 221 71.0
MD07G1293600 Malus domestica HOM05D005275 ORTHO05D006435 7.1e-79 297.7 223 70.4
Gohir.A12G115900 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.1e-78 296.2 221 70.6
Gohir.D01G152400 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.1e-78 296.2 221 70.6
Gohir.D05G384500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.1e-78 296.2 221 70.6
Gohir.A04G061600 Gossypium hirsutum HOM05D005275 ORTHO05D006435 4.6e-78 295.0 221 70.6
Gohir.A08G051700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 7.9e-78 294.3 221 70.1
Thecc.10G105800 Theobroma cacao HOM05D005275 ORTHO05D006435 1.8e-77 293.1 204 73.5
Lj3g0024506 Lotus japonicus HOM05D005275 ORTHO05D006435 4.3e-76 288.5 223 67.7
Potri.012G017300 Populus trichocarpa HOM05D005275 ORTHO05D006435 5.7e-76 288.1 221 69.7
Potri.012G121228 Populus trichocarpa HOM05D005275 ORTHO05D006435 9.6e-76 287.3 221 68.8
GSVIVG01038570001 Vitis vinifera HOM05D005275 ORTHO05D006435 2.1e-75 286.2 220 67.7
Ciclev10022175m.g Citrus clementina HOM05D005275 ORTHO05D006435 8.2e-75 284.3 220 67.3
Glyma.06G288700 Glycine max HOM05D005275 ORTHO05D006435 1.1e-74 283.9 223 64.1
Glyma.19G085300 Glycine max HOM05D005275 ORTHO05D006435 1.8e-74 283.1 223 64.6
Lalb_Chr22g0360521 Lupinus albus HOM05D005275 ORTHO05D006435 2.4e-74 282.7 221 65.2
Ca_10483_v3 Cicer arietinum L. HOM05D005275 ORTHO05D006435 4.1e-74 282.0 223 65.9
Phvul.008G150700 Phaseolus vulgaris HOM05D005275 ORTHO05D006435 6.9e-74 281.2 223 65.0
Atru.chr1.1611 Acer truncatum HOM05D005275 ORTHO05D006435 9.0e-74 280.8 221 67.0
Nn8g39914 Nelumbo nucifera HOM05D005275 ORTHO05D006435 1.5e-73 280.0 220 67.7
Glyma.16G061500 Glycine max HOM05D005275 ORTHO05D006435 2.6e-73 279.3 223 63.2
Psat7g227360 Pisum sativum HOM05D005275 ORTHO05D006435 5.9e-73 278.1 223 64.6
TPR.G34143 Trifolium pratense HOM05D005275 ORTHO05D006435 1.3e-72 276.9 223 64.6
THA.LOC104811989 Tarenaya hassleriana HOM05D005275 ORTHO05D006435 2.9e-72 275.8 222 66.2
Medtr5g038540 Medicago truncatula HOM05D005275 ORTHO05D006435 6.5e-72 274.6 223 64.6
Carub.0008s1327 Capsella rubella HOM05D005275 ORTHO05D006435 1.9e-71 273.1 219 64.4
AL8G27700 Arabidopsis lyrata HOM05D005275 ORTHO05D006435 3.2e-71 272.3 219 63.0
arahy.Tifrunner.gnm1.ann1.T9K8GJ Arachis hypogaea HOM05D005275 ORTHO05D006435 7.2e-71 271.2 222 61.7
arahy.Tifrunner.gnm1.ann1.AF7P3K Arachis hypogaea HOM05D005275 ORTHO05D006435 9.3e-71 270.8 222 61.7
arahy.Tifrunner.gnm1.ann1.5IWG5U Arachis hypogaea HOM05D005275 ORTHO05D006435 3.6e-70 268.9 222 61.3
EL10Ac3g05547 Beta vulgaris HOM05D005275 ORTHO05D006435 1.8e-69 266.5 220 65.0
CARHR266090 Cardamine hirsuta HOM05D005275 ORTHO05D006435 1.8e-69 266.5 219 62.1
Medtr1g067700 Medicago truncatula HOM05D005275 ORTHO05D006435 2.3e-69 266.2 226 64.2
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 3.9e-69 265.4 219 64.8
MBI14_g34252_MAGBIO Magnolia biondii HOM05D005275 ORTHO05D006435 3.9e-69 265.4 220 64.5
AT5G53070 Arabidopsis thaliana HOM05D005275 ORTHO05D006435 6.7e-69 264.6 219 62.1
CSS0019342 Camellia sinensis var. sinensis HOM05D005275 ORTHO05D006435 6.7e-69 264.6 224 66.1
PSO421G0063 Papaver somniferum HOM05D005275 ORTHO05D006435 6.7e-69 264.6 219 65.3
Lj8A623T20 Lonicera japonica HOM05D005275 ORTHO05D006435 8.7e-69 264.2 224 65.2
Sabra12G0015200 Salix brachista HOM05D005275 ORTHO05D007032 8.7e-69 264.2 250 60.0
Ciclev10023889m.g Citrus clementina HOM05D005275 ORTHO05D006435 3.3e-68 262.3 222 64.0
Thhalv10014627m.g Eutrema salsugineum HOM05D005275 ORTHO05D006435 1.6e-67 260.0 219 62.6
Lsat_1_v5_gn_7_91160 Lactuca sativa HOM05D005275 ORTHO05D006435 2.2e-67 259.6 223 63.2
BcaC03g14459 Brassica carinata HOM05D005275 ORTHO05D006435 3.7e-67 258.8 219 63.5
HanXRQChr16g0505961 Helianthus annuus HOM05D005275 ORTHO05D006435 4.8e-67 258.5 220 62.7
BcaB05g22006 Brassica carinata HOM05D000442 ORTHO05D007032 6.3e-67 258.1 219 63.0
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 1.1e-66 257.3 191 70.7
Hma1.2p1_1507F.1_g287690 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 4.1e-66 255.4 217 64.1
A02p11320 Brassica napus HOM05D005275 ORTHO05D006435 6.9e-66 254.6 219 62.1
PSO675G7727 Papaver somniferum HOM05D005275 ORTHO05D006435 1.2e-65 253.8 207 66.7
AUR62002807 Chenopodium quinoa HOM05D005275 ORTHO05D006435 1.5e-65 253.4 220 61.8
C02p18700 Brassica napus HOM05D005275 ORTHO05D006435 2.6e-65 252.7 219 62.1
BcaB08g35669 Brassica carinata HOM05D005275 ORTHO05D006435 3.4e-65 252.3 219 61.6
BcaC04g20510 Brassica carinata HOM05D005275 ORTHO05D006435 3.4e-65 252.3 219 61.2
C09p42780 Brassica napus HOM05D005275 ORTHO05D006435 3.4e-65 252.3 219 61.2
BraA02t06194Z Brassica rapa HOM05D005275 ORTHO05D006435 3.4e-65 252.3 219 61.2
Sp6g15240 Schrenkiella parvula HOM05D005275 ORTHO05D006435 3.4e-65 252.3 219 61.2
HanXRQChr04g0128021 Helianthus annuus HOM05D005275 ORTHO05D006435 5.9e-65 251.5 220 61.8
Gohir.D09G028700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.0e-64 250.8 199 68.3
A10p10560 Brassica napus HOM05D005275 ORTHO05D006435 1.7e-64 250.0 219 60.7
Aqoxy7G03390 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 2.2e-64 249.6 220 61.4
BraA10t43140Z Brassica rapa HOM05D005275 ORTHO05D006435 2.9e-64 249.2 219 60.3
Sc02g0003260 Simmondsia chinensis HOM05D005275 ORTHO05D006435 1.1e-63 247.3 236 59.7
Ah.13g074120 Amaranthus hybridus HOM05D000770 ORTHO05D000586 1.4e-63 246.9 232 59.9
ECA236G4645 Erigeron canadensis HOM05D005275 ORTHO05D006435 2.5e-63 246.1 222 60.8
TAR374G1406 Trochodendron aralioides HOM05D005275 ORTHO05D006435 2.5e-63 246.1 188 69.7
BolC9t57154H Brassica oleracea HOM05D005275 ORTHO05D006435 5.5e-63 245.0 227 59.0
DCAR_008951 Daucus carota HOM05D005275 ORTHO05D006435 7.2e-63 244.6 220 61.4
BolC2t08015H Brassica oleracea HOM05D005275 ORTHO05D006435 2.1e-62 243.0 233 58.4
Cc01_g04130 Coffea canephora HOM05D005275 ORTHO05D006435 1.4e-61 240.4 221 60.2
Hund20626 Selenicereus undatus HOM05D005275 ORTHO05D006435 1.4e-61 240.4 215 58.6
Actinidia34231 Actinidia chinensis HOM05D005275 ORTHO05D006435 6.7e-61 238.0 207 63.8
SHI02356 Sapria himalayana HOM05D005275 ORTHO05D006435 2.8e-59 232.6 233 52.8
vmacro06395 Vaccinium macrocarpon HOM05D005275 ORTHO05D006435 1.4e-58 230.3 257 55.3
Oeu060995.2 Olea europaea HOM05D005275 ORTHO05D006435 2.4e-58 229.6 220 57.3
HPP92_008880 Vanilla planifolia HOM05D005275 ORTHO05D006435 2.4e-58 229.6 215 60.0
ATR0564G295 Amborella trichopoda HOM05D005275 ORTHO05D006435 3.1e-58 229.2 204 61.8
AUR62014115 Chenopodium quinoa HOM05D005275 ORTHO05D006435 3.1e-58 229.2 265 50.6
Peaxi162Scf00251g01010 Petunia axillaris HOM05D005275 ORTHO05D006435 3.1e-58 229.2 222 57.7
Gohir.A07G020100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.4e-57 225.7 167 71.3
Rhsim03G0210600 Rhododendron simsii HOM05D005275 ORTHO05D006435 3.4e-57 225.7 278 51.4
MSTRG.48 Avicennia marina HOM05D005275 ORTHO05D006435 5.9e-57 224.9 220 57.3
arahy.Tifrunner.gnm1.ann1.G3VF9V Arachis hypogaea HOM05D005275 ORTHO05D006435 4.2e-55 218.8 346 39.6
CDE01G0034 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 5.5e-55 218.4 223 54.3
Solyc05g032880.3 Solanum lycopersicum HOM05D005275 ORTHO05D006435 5.5e-55 218.4 229 54.1
Migut.F01020 Erythranthe guttata HOM05D005275 ORTHO05D006435 9.4e-55 217.6 220 57.7
Sopen05g023270 Solanum pennellii HOM05D005275 ORTHO05D006435 1.2e-54 217.2 229 53.3
Actinidia08664 Actinidia chinensis HOM05D005275 ORTHO05D006435 2.7e-54 216.1 186 65.1
Nitab4.5_0004499g0010 Nicotiana tabacum HOM05D005275 ORTHO05D006435 1.8e-53 213.4 193 57.5
Nitab4.5_0000006g0650 Nicotiana tabacum HOM05D005275 ORTHO05D006435 1.1e-52 210.7 193 57.5
Peaxi162Scf00581g00021 Petunia axillaris HOM05D005275 ORTHO05D006435 1.5e-52 210.3 256 49.2
Lj1C1021T21 Lonicera japonica HOM05D005275 ORTHO05D006435 1.4e-50 203.8 216 56.5
Gohir.A10G000100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.4e-50 203.0 154 70.8
Os05g0528900 Oryza sativa ssp. japonica HOM05D005275 ORTHO05D006435 4.1e-50 202.2 198 56.1
MELO3C019369.2 Cucumis melo HOM05D005275 ORTHO05D006435 1.6e-49 200.3 149 71.8
Gohir.A12G032500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 4.2e-47 192.2 149 68.5
VMungo1383G0294 Vigna mungo HOM05D005275 ORTHO05D006435 2.7e-46 189.5 168 59.5
FvH4_7g32000 Fragaria vesca HOM05D005275 ORTHO05D006435 3.6e-46 189.1 138 74.6
Zm00001eb199670 Zea mays HOM05D005275 ORTHO05D006435 6.1e-46 188.3 253 45.5
CDE02G4591 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 5.2e-45 185.3 190 56.3
SGA_v2.0_scaffold55G19785 Striga asiatica HOM05D005275 ORTHO05D006435 6.7e-45 184.9 195 54.9
Duzib128G1952 Durio zibethinus HOM05D005275 ORTHO05D006435 7.0e-42 174.9 140 69.3
Sc20g0002940 Simmondsia chinensis HOM05D005275 ORTHO05D006435 9.4e-39 164.5 145 64.1
Hma1.2p1_1507F.1_g287680 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 9.8e-36 154.5 135 64.4
Aa31LG3G9400 Aethionema arabicum HOM05D005275 ORTHO05D006435 2.2e-35 153.3 153 59.5
PGSC0003DMG400005324 Solanum tuberosum HOM05D005275 ORTHO05D006435 1.8e-34 150.2 176 51.1
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 5.4e-34 148.7 119 70.6
unitig_62.g23847 Utricularia gibba HOM05D002066 ORTHO05D001617 8.5e-32 141.4 167 50.9
Dinv21061 Davidia involucrata HOM05D005275 ORTHO05D006435 7.2e-31 138.3 97 75.3
SMO334G0054 Selaginella moellendorffii HOM05D005275 ORTHO05D006435 1.2e-28 131.0 186 40.9
Ciclev10024016m.g Citrus clementina HOM05D005275 ORTHO05D006435 1.7e-27 127.1 94 68.1
Oeu037051.1 Olea europaea HOM05D005275 ORTHO05D006435 3.1e-26 122.9 128 54.7
Mapoly0074s0056 Marchantia polymorpha HOM05D005275 ORTHO05D006435 1.6e-25 120.6 201 38.3
Pp3c9_14000 Physcomitrium patens HOM05D005275 ORTHO05D006435 2.7e-25 119.8 196 39.8
CBR_g30099 Chara braunii HOM05D005275 ORTHO05D006435 1.6e-22 110.5 200 35.5
Lsat_1_v5_gn_9_70281 Lactuca sativa HOM05D005275 ORTHO05D006435 1.5e-20 104.0 152 46.7
SEGI_07593 Sequoiadendron giganteum HOM05D005275 ORTHO05D006435 4.4e-20 102.4 141 46.8
Sc21g0003940 Simmondsia chinensis HOM05D007402 ORTHO05D003673 4.9e-19 99.0 202 36.1
Zm00001eb397120 Zea mays HOM05D005275 ORTHO05D006435 1.6e-17 94.0 94 55.3
Zm00001eb089870 Zea mays HOM05D005275 ORTHO05D006435 3.0e-16 89.7 94 53.2
Ciclev10023389m.g Citrus clementina HOM05D005275 ORTHO05D006435 1.9e-15 87.0 61 65.6
AagrBONN_evm.TU.Sc2ySwM_228.762 Anthoceros agrestis HOM05D005275 ORTHO05D006435 5.2e-13 79.0 146 38.4
Aqoxy2G00110 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 9.8e-12 74.7 63 60.3
QL09p008105 Quercus lobata HOM05D005275 ORTHO05D006435 2.4e-10 70.1 50 66.0
MCO07G577 Micromonas commoda HOM05D005275 ORTHO05D006435 2.3e-08 63.5 185 31.9
CBR_g36656 Chara braunii HOM05D006252 ORTHO05D007909 1.6e-06 57.4 170 26.5


User provided reference genes

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