Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G0568 Cannabis sativa HOM05D005196 ORTHO05D006107 3.9e-134 481.5 246 100.0
Haze_08760 Corylus avellana HOM05D005196 ORTHO05D006107 1.8e-91 339.7 246 74.0
CiPaw.11G130000 Carya illinoinensis HOM05D005196 ORTHO05D006107 9.1e-91 337.4 245 75.5
MSTRG.11956 Avicennia marina HOM05D005196 ORTHO05D006107 2.0e-90 336.3 203 82.8
RcHm_v2.0_Chr7g0196611 Rosa chinensis HOM05D005196 ORTHO05D006107 2.0e-90 336.3 246 75.2
QL12p031809 Quercus lobata HOM05D005196 ORTHO05D006107 2.6e-90 335.9 195 86.7
MD14G1111600 Malus domestica HOM05D005196 ORTHO05D006107 3.5e-90 335.5 246 73.6
GSVIVG01019415001 Vitis vinifera HOM05D005196 ORTHO05D006107 4.5e-90 335.1 185 89.2
Prupe.5G106300 Prunus persica HOM05D005196 ORTHO05D006107 7.7e-90 334.3 247 72.5
Nn1g01669 Nelumbo nucifera HOM05D005196 ORTHO05D006107 1.0e-89 334.0 243 72.8
Nitab4.5_0007906g0030 Nicotiana tabacum HOM05D005196 ORTHO05D006107 1.0e-89 334.0 186 87.6
Cfa012239 Carpinus fangiana HOM05D005196 ORTHO05D006107 1.7e-89 333.2 187 89.8
Cpa.g.sc631.3 Carica papaya HOM05D005196 ORTHO05D006107 2.2e-89 332.8 245 73.5
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 2.2e-89 332.8 216 77.8
Sed0013368 Sechium edule HOM05D005196 ORTHO05D006107 2.2e-89 332.8 243 74.1
CiPaw.12G089400 Carya illinoinensis HOM05D005196 ORTHO05D006107 3.8e-89 332.0 216 78.7
Potri.003G132400 Populus trichocarpa HOM05D005196 ORTHO05D006107 3.8e-89 332.0 237 73.8
Ciclev10021991m.g Citrus clementina HOM05D005196 ORTHO05D006107 5.0e-89 331.6 197 82.7
MELO3C016339.2 Cucumis melo HOM05D005196 ORTHO05D006107 6.5e-89 331.3 247 72.1
LjContig00312_ERROPOS870357g0014232 Lotus japonicus HOM05D005196 ORTHO05D006107 6.5e-89 331.3 244 72.1
TAR636G2140 Trochodendron aralioides HOM05D005196 ORTHO05D006107 6.5e-89 331.3 183 89.1
Nitab4.5_0003015g0100 Nicotiana tabacum HOM05D005196 ORTHO05D006107 8.5e-89 330.9 186 87.1
Potri.001G099300 Populus trichocarpa HOM05D005196 ORTHO05D006107 1.1e-88 330.5 247 72.5
CSS0021900 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 1.5e-88 330.1 245 71.4
FAN13G1103 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.9e-88 329.7 216 77.3
Sopen08g029880 Solanum pennellii HOM05D005196 ORTHO05D006107 2.5e-88 329.3 223 76.7
Lsat_1_v5_gn_6_84980 Lactuca sativa HOM05D005196 ORTHO05D006107 3.2e-88 328.9 213 80.3
FvH4_5g03170 Fragaria vesca HOM05D005196 ORTHO05D006107 4.2e-88 328.6 216 76.9
HanXRQChr03g0085971 Helianthus annuus HOM05D005196 ORTHO05D006107 4.2e-88 328.6 209 81.3
CAN.G532.37 Capsicum annuum HOM05D005196 ORTHO05D006107 5.5e-88 328.2 188 85.1
Cc08_g15230 Coffea canephora HOM05D005196 ORTHO05D006107 1.2e-87 327.0 251 70.9
ClCG07G007880 Citrullus lanatus HOM05D005196 ORTHO05D006107 1.6e-87 326.6 243 72.0
CsaV3_4G006100 Cucumis sativus L. HOM05D005196 ORTHO05D006107 1.6e-87 326.6 244 71.7
FAN04G1400 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.6e-87 326.6 216 77.3
FAN18G0698 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.6e-87 326.6 182 86.3
Glyma.11G021400 Glycine max HOM05D005196 ORTHO05D006107 2.1e-87 326.2 186 86.0
Solyc08g081570.3 Solanum lycopersicum HOM05D005196 ORTHO05D006107 2.1e-87 326.2 246 69.5
Migut.A00721 Erythranthe guttata HOM05D005196 ORTHO05D006107 2.7e-87 325.9 246 70.7
Hma1.2p1_0377F.1_g139550 Hydrangea macrophylla HOM05D005196 ORTHO05D006107 3.6e-87 325.5 240 73.3
Peaxi162Scf00074g01724 Petunia axillaris HOM05D005196 ORTHO05D006107 4.7e-87 325.1 186 84.4
MD06G1090700 Malus domestica HOM05D005196 ORTHO05D006107 6.1e-87 324.7 246 71.1
PGSC0003DMG400012185 Solanum tuberosum HOM05D005196 ORTHO05D006107 8.0e-87 324.3 223 75.3
SGA_v2.0_scaffold111G31472 Striga asiatica HOM05D005196 ORTHO05D006107 8.0e-87 324.3 212 76.9
Aa31LG2G1060 Aethionema arabicum HOM05D005196 ORTHO05D006107 1.4e-86 323.6 247 72.1
AL2G11140 Arabidopsis lyrata HOM05D005196 ORTHO05D006107 1.4e-86 323.6 226 74.3
arahy.Tifrunner.gnm1.ann1.RG9U10 Arachis hypogaea HOM05D005196 ORTHO05D006107 1.4e-86 323.6 226 75.7
Carub.0002s0087 Capsella rubella HOM05D005196 ORTHO05D006107 1.4e-86 323.6 195 82.6
COL.COLO4_08364 Corchorus olitorius HOM05D005196 ORTHO05D006107 1.4e-86 323.6 225 76.0
Lj2A178G47 Lonicera japonica HOM05D005196 ORTHO05D006107 1.4e-86 323.6 242 71.5
AUR62010748 Chenopodium quinoa HOM05D005196 ORTHO05D006107 2.3e-86 322.8 200 80.5
Duzib068G0196 Durio zibethinus HOM05D005196 ORTHO05D006107 2.3e-86 322.8 186 87.6
Manes.02G017610 Manihot esculenta HOM05D005196 ORTHO05D006107 3.0e-86 322.4 233 73.8
Thecc.03G286300 Theobroma cacao HOM05D005196 ORTHO05D006107 3.0e-86 322.4 186 86.6
AT1G63970 Arabidopsis thaliana HOM05D005196 ORTHO05D006107 5.2e-86 321.6 245 69.8
Medtr5g010010 Medicago truncatula HOM05D005196 ORTHO05D006107 5.2e-86 321.6 200 78.5
PGR031G3114 Punica granatum HOM05D005196 ORTHO05D006107 5.2e-86 321.6 242 71.5
Phvul.002G159900 Phaseolus vulgaris HOM05D005196 ORTHO05D006107 6.7e-86 321.2 246 70.3
Hund11434 Selenicereus undatus HOM05D005196 ORTHO05D006107 6.7e-86 321.2 244 72.1
Duzib205G0943 Durio zibethinus HOM05D005196 ORTHO05D006107 8.8e-86 320.9 224 76.3
Sp2g00720 Schrenkiella parvula HOM05D005196 ORTHO05D006107 8.8e-86 320.9 246 70.3
Eucgr.E00780 Eucalyptus grandis HOM05D005196 ORTHO05D006107 1.1e-85 320.5 187 86.1
Sabra03G0094900 Salix brachista HOM05D005196 ORTHO05D006107 1.5e-85 320.1 237 74.3
Gohir.A02G105500 Gossypium hirsutum HOM05D005196 ORTHO05D006107 2.6e-85 319.3 202 80.2
Aqoxy7G00203 Aquilegia oxysepala HOM05D005196 ORTHO05D006107 3.3e-85 318.9 245 70.6
MSTRG.13860 Avicennia marina HOM05D005196 ORTHO05D006107 4.4e-85 318.5 244 68.4
CARHR047010 Cardamine hirsuta HOM05D005196 ORTHO05D006107 4.4e-85 318.5 215 75.3
unitig_37.g12237 Utricularia gibba HOM05D005196 ORTHO05D006107 4.4e-85 318.5 188 85.1
Actinidia10607 Actinidia chinensis HOM05D005196 ORTHO05D006107 5.7e-85 318.2 190 83.2
DCAR_005572 Daucus carota HOM05D005196 ORTHO05D006107 5.7e-85 318.2 186 85.5
SGA_v2.0_scaffold144G35903 Striga asiatica HOM05D005196 ORTHO05D006107 5.7e-85 318.2 236 71.2
A09p14050 Brassica napus HOM05D005196 ORTHO05D006107 7.5e-85 317.8 247 70.9
Gohir.D03G078300 Gossypium hirsutum HOM05D005196 ORTHO05D006107 7.5e-85 317.8 243 72.4
Gorai.003G085800 Gossypium raimondii HOM05D005196 ORTHO05D006107 7.5e-85 317.8 243 72.4
BcaB07g31421 Brassica carinata HOM05D005196 ORTHO05D006107 9.7e-85 317.4 251 68.9
A09p15170 Brassica napus HOM05D005196 ORTHO05D006107 1.7e-84 316.6 247 71.3
Sabra01G0074500 Salix brachista HOM05D005196 ORTHO05D006107 1.7e-84 316.6 186 84.9
TWI81G1086 Tripterygium wilfordii HOM05D005196 ORTHO05D006107 1.7e-84 316.6 246 69.1
BcaB07g31533 Brassica carinata HOM05D005196 ORTHO05D006107 2.8e-84 315.8 246 69.1
BraA09t37159Z Brassica rapa HOM05D005196 ORTHO05D006107 2.8e-84 315.8 247 70.4
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 2.8e-84 315.8 266 65.8
Ah.12g051910 Amaranthus hybridus HOM05D005196 ORTHO05D006107 3.7e-84 315.5 222 72.1
C09p16940 Brassica napus HOM05D005196 ORTHO05D006107 3.7e-84 315.5 246 70.7
Ca_24538_v3 Cicer arietinum L. HOM05D005196 ORTHO05D006107 3.7e-84 315.5 221 73.3
Rhsim02G0235500 Rhododendron simsii HOM05D005196 ORTHO05D006107 3.7e-84 315.5 221 74.2
BraA09t37052Z Brassica rapa HOM05D005196 ORTHO05D006107 4.8e-84 315.1 247 70.4
PSO782G4831 Papaver somniferum HOM05D005196 ORTHO05D006107 4.8e-84 315.1 247 69.6
THA.LOC104823600 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 4.8e-84 315.1 191 82.7
Oeu042360.2 Olea europaea HOM05D005196 ORTHO05D006107 1.4e-83 313.5 251 68.5
PSO478G4030 Papaver somniferum HOM05D005196 ORTHO05D006107 1.4e-83 313.5 248 68.1
HPP92_025411 Vanilla planifolia HOM05D005196 ORTHO05D006107 1.8e-83 313.2 183 83.6
BcaC04g22662 Brassica carinata HOM05D005196 ORTHO05D006107 4.1e-83 312.0 246 70.7
Gorai.004G137800 Gossypium raimondii HOM05D005196 ORTHO05D006107 4.1e-83 312.0 237 70.0
ATR0661G112 Amborella trichopoda HOM05D005196 ORTHO05D006107 1.2e-82 310.5 167 89.2
BolC9t54591H Brassica oleracea HOM05D005196 ORTHO05D006107 1.2e-82 310.5 215 75.8
Lalb_Chr09g0320831 Lupinus albus HOM05D005196 ORTHO05D006107 2.0e-82 309.7 163 89.0
THA.LOC104809368 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 7.7e-82 307.8 245 69.0
Os02g0680600 Oryza sativa ssp. japonica HOM05D005196 ORTHO05D006107 1.3e-81 307.0 223 70.4
C09p18370 Brassica napus HOM05D005196 ORTHO05D006107 2.2e-81 306.2 246 68.3
BolC9t54730H Brassica oleracea HOM05D005196 ORTHO05D006107 2.2e-81 306.2 246 68.3
BcaC04g22518 Brassica carinata HOM05D005196 ORTHO05D006107 3.8e-81 305.4 245 68.2
Gohir.D08G134600 Gossypium hirsutum HOM05D005196 ORTHO05D006107 5.0e-81 305.1 244 68.0
ECA240G2051 Erigeron canadensis HOM05D000662 ORTHO05D000597 4.2e-80 302.0 225 72.9
Mapoly0107s0035 Marchantia polymorpha HOM05D005196 ORTHO05D006107 4.2e-80 302.0 186 79.0
SEGI_33828 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 6.1e-79 298.1 166 84.3
Sc01g0009830 Simmondsia chinensis HOM05D005196 ORTHO05D006107 1.8e-78 296.6 218 70.2
SMO118G0129 Selaginella moellendorffii HOM05D005196 ORTHO05D006107 2.3e-78 296.2 203 71.9
Pp3c3_18960 Physcomitrium patens HOM05D005196 ORTHO05D006107 8.8e-78 294.3 246 63.8
arahy.Tifrunner.gnm1.ann1.072U0I Arachis hypogaea HOM05D005196 ORTHO05D006107 4.4e-77 292.0 247 67.6
CBR_g41628 Chara braunii HOM05D005196 ORTHO05D006107 3.5e-74 282.3 175 74.3
Eucgr.L03318 Eucalyptus grandis HOM05D005196 ORTHO05D006107 4.5e-74 282.0 165 84.8
Dinv37598 Davidia involucrata HOM05D005196 ORTHO05D006107 1.5e-72 276.9 154 87.7
vmacro11408 Vaccinium macrocarpon HOM05D005196 ORTHO05D006107 6.1e-71 271.6 208 71.2
EL10Ac5g12833 Beta vulgaris HOM05D005196 ORTHO05D006107 1.4e-70 270.4 292 56.5
Ah.07g196720 Amaranthus hybridus HOM05D005196 ORTHO05D006107 3.4e-69 265.8 231 63.2
Cre12.g503550 Chlamydomonas reinhardtii HOM05D005196 ORTHO05D006107 7.5e-69 264.6 203 65.5
TPR.G6615 Trifolium pratense HOM05D005196 ORTHO05D006107 4.1e-67 258.8 250 61.6
PRCOL_00001316 Prasinoderma coloniale HOM05D005196 ORTHO05D006107 2.0e-66 256.5 186 63.4
SEGI_11641 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 6.6e-65 251.5 244 59.8
MCO02G159 Micromonas commoda HOM05D005196 ORTHO05D006107 2.1e-63 246.5 165 69.1
Actinidia28347 Actinidia chinensis HOM05D005196 ORTHO05D006107 2.6e-61 239.6 220 63.2
Atru.chr9.2118 Acer truncatum HOM05D005196 ORTHO05D006107 7.8e-58 228.0 122 91.0
CDE11G0665 Ceratophyllum demersum HOM05D005196 ORTHO05D006107 3.5e-50 202.6 163 65.6
Cfa012243 Carpinus fangiana HOM05D005196 ORTHO05D006107 2.5e-48 196.4 173 64.2
TAR629G0373 Trochodendron aralioides HOM05D005196 ORTHO05D006107 4.4e-45 185.7 136 69.9
Psat2g183400 Pisum sativum HOM05D005196 ORTHO05D006107 5.8e-45 185.3 167 61.1
Sed0007168 Sechium edule HOM05D005196 ORTHO05D006107 5.8e-45 185.3 112 83.9
Zm00001eb187250 Zea mays HOM05D005196 ORTHO05D006107 7.8e-42 174.9 111 77.5
C04p29780 Brassica napus HOM05D005196 ORTHO05D006107 3.9e-41 172.6 104 81.7
BcaC02g10359 Brassica carinata HOM05D005196 ORTHO05D006107 5.1e-41 172.2 104 80.8
Zm00001eb250670 Zea mays HOM05D005196 ORTHO05D006107 2.5e-40 169.9 137 65.7
Cfa012242 Carpinus fangiana HOM05D005196 ORTHO05D006107 2.3e-33 146.7 82 90.2
Gohir.A08G114400 Gossypium hirsutum HOM05D005196 ORTHO05D006107 3.9e-33 146.0 127 66.9
VMungo0251G1828 Vigna mungo HOM05D005196 ORTHO05D006107 2.8e-31 139.8 78 88.5
Haze_27119 Corylus avellana HOM05D005196 ORTHO05D006107 1.1e-30 137.9 170 41.2
PSO782G0193 Papaver somniferum HOM05D005196 ORTHO05D006107 1.1e-30 137.9 124 58.9
AUR62019751 Chenopodium quinoa HOM05D005196 ORTHO05D006107 2.6e-29 133.3 75 89.3
TAR629G1542 Trochodendron aralioides HOM05D005196 ORTHO05D006107 4.9e-28 129.0 71 93.0
CSS0017594 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 3.1e-22 109.8 77 75.3
AagrBONN_evm.TU.Sc2ySwM_344.1771 Anthoceros agrestis HOM05D005196 ORTHO05D006107 9.3e-19 98.2 64 73.4
BolC4t24512H Brassica oleracea HOM05D005196 ORTHO05D006107 1.1e-16 91.3 92 56.5
Gohir.A08G114450 Gossypium hirsutum HOM05D005196 ORTHO05D006107 3.3e-16 89.7 49 83.7
MD06G1092700 Malus domestica HOM05D005196 ORTHO05D006107 5.3e-14 82.4 119 47.9
MD13G1222800 Malus domestica HOM05D005196 ORTHO05D006107 2.1e-10 70.5 47 70.2
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 1.5e-08 64.3 32 90.6
MD14G1120300 Malus domestica HOM05D005196 ORTHO05D006107 2.1e-07 60.5 52 61.5
C04p29790 Brassica napus HOM05D005196 ORTHO05D006107 6.2e-07 58.9 28 82.1
BolC4t24513H Brassica oleracea HOM05D005196 ORTHO05D006107 6.2e-07 58.9 28 82.1


User provided reference genes

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