Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G0452 Cannabis sativa HOM05D003763 ORTHO05D004315 8.4e-161 570.5 323 100.0
Lj4g0003870 Lotus japonicus HOM05D003763 ORTHO05D004315 4.5e-130 468.4 326 84.0
Duzib205G0169 Durio zibethinus HOM05D003763 ORTHO05D004315 4.2e-128 461.8 323 83.3
Prupe.5G086900 Prunus persica HOM05D003763 ORTHO05D004315 4.2e-128 461.8 324 83.3
Thecc.03G267900 Theobroma cacao HOM05D003763 ORTHO05D004315 4.2e-128 461.8 323 81.1
Duzib084G0949 Durio zibethinus HOM05D003763 ORTHO05D004315 9.3e-128 460.7 323 82.0
Cfa012069 Carpinus fangiana HOM05D003763 ORTHO05D004315 1.2e-127 460.3 328 81.1
Cpa.g.sc29.40 Carica papaya HOM05D003763 ORTHO05D004315 2.1e-127 459.5 323 81.7
Ca_20236_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 2.7e-127 459.1 325 82.8
MD04G1071000 Malus domestica HOM05D003763 ORTHO05D004315 3.6e-127 458.8 326 81.3
Manes.01G070000 Manihot esculenta HOM05D003763 ORTHO05D004315 7.9e-127 457.6 326 80.4
Phvul.003G213900 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 8.7e-126 454.1 326 81.6
Gohir.D08G195200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 2.5e-125 452.6 323 81.1
TWI60G0957 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 4.3e-125 451.8 326 79.4
Lalb_Chr05g0214701 Lupinus albus HOM05D003763 ORTHO05D004315 7.4e-125 451.1 324 81.2
TWI81G0532 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 9.7e-125 450.7 326 78.8
Glyma.05G051300 Glycine max HOM05D003763 ORTHO05D004315 1.6e-124 449.9 326 81.6
COL.COLO4_23800 Corchorus olitorius HOM05D003763 ORTHO05D004315 2.8e-124 449.1 327 80.4
Glyma.17G133200 Glycine max HOM05D003763 ORTHO05D004315 4.8e-124 448.4 335 80.0
GSVIVG01019890001 Vitis vinifera HOM05D003763 ORTHO05D004315 6.3e-124 448.0 327 79.5
FAN04G0845 Fragaria x ananassa HOM05D003763 ORTHO05D004315 1.4e-123 446.8 326 80.1
FvH4_5g01180 Fragaria vesca HOM05D003763 ORTHO05D004315 1.8e-123 446.4 327 80.4
TAR629G0773 Trochodendron aralioides HOM05D003763 ORTHO05D004315 3.1e-123 445.7 328 78.0
arahy.Tifrunner.gnm1.ann1.QN4KPS Arachis hypogaea HOM05D003763 ORTHO05D004315 5.3e-123 444.9 333 80.2
FAN13G2490 Fragaria x ananassa HOM05D003763 ORTHO05D004315 6.9e-123 444.5 327 79.8
VMungo1215G3348 Vigna mungo HOM05D003763 ORTHO05D004315 9.1e-123 444.1 359 74.7
FAN18G3786 Fragaria x ananassa HOM05D003763 ORTHO05D004315 1.5e-122 443.4 329 79.6
CSS0018103 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 2.0e-122 443.0 329 77.2
VMungo1215G1438 Vigna mungo HOM05D003763 ORTHO05D004315 3.4e-122 442.2 326 77.6
Dinv37708 Davidia involucrata HOM05D003763 ORTHO05D004315 1.0e-121 440.7 325 78.8
Potri.003G119200 Populus trichocarpa HOM05D003763 ORTHO05D004315 1.0e-121 440.7 332 79.2
Gorai.004G206000 Gossypium raimondii HOM05D003763 ORTHO05D004315 1.7e-121 439.9 332 78.6
CiPaw.12G101000 Carya illinoinensis HOM05D003763 ORTHO05D004315 5.0e-121 438.3 331 78.9
Potri.001G113000 Populus trichocarpa HOM05D003763 ORTHO05D004315 5.0e-121 438.3 331 77.6
RcHm_v2.0_Chr7g0199911 Rosa chinensis HOM05D003763 ORTHO05D004315 6.5e-121 438.0 325 79.1
Gorai.008G242200 Gossypium raimondii HOM05D003763 ORTHO05D004315 8.5e-121 437.6 323 80.2
FAN08G0919 Fragaria x ananassa HOM05D003763 ORTHO05D004315 1.1e-120 437.2 328 78.7
Sabra03G0083200 Salix brachista HOM05D003763 ORTHO05D004315 1.4e-120 436.8 326 78.8
CSS0001568 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 3.2e-120 435.6 322 78.3
Gohir.D12G226200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 3.2e-120 435.6 323 79.9
Phvul.002G152800 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 3.2e-120 435.6 328 77.7
THA.LOC104814132 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 9.4e-120 434.1 327 78.3
Atru.chr9.1500 Acer truncatum HOM05D003763 ORTHO05D004315 1.6e-119 433.3 325 78.8
vmacro14015 Vaccinium macrocarpon HOM05D003763 ORTHO05D004315 1.6e-119 433.3 341 76.0
Ciclev10021127m.g Citrus clementina HOM05D003763 ORTHO05D004315 2.1e-119 433.0 328 78.4
Migut.E01271 Erythranthe guttata HOM05D003763 ORTHO05D004315 6.1e-119 431.4 325 76.9
Glyma.01G214300 Glycine max HOM05D003763 ORTHO05D004315 7.9e-119 431.0 324 77.8
Lsat_1_v5_gn_6_78800 Lactuca sativa HOM05D003763 ORTHO05D004315 3.0e-118 429.1 328 75.3
Migut.E01022 Erythranthe guttata HOM05D003763 ORTHO05D004315 5.1e-118 428.3 325 76.3
TAR622G0836 Trochodendron aralioides HOM05D003763 ORTHO05D004315 5.1e-118 428.3 336 76.2
Oeu056817.1 Olea europaea HOM05D003763 ORTHO05D004315 8.8e-118 427.6 335 73.4
Sopen08g003700 Solanum pennellii HOM05D003763 ORTHO05D004315 8.8e-118 427.6 324 77.2
TPR.G37646 Trifolium pratense HOM05D003763 ORTHO05D004315 1.5e-117 426.8 337 75.4
Sp6g05550 Schrenkiella parvula HOM05D003763 ORTHO05D004315 2.0e-117 426.4 329 76.9
CAN.G1394.10 Capsicum annuum HOM05D003763 ORTHO05D004315 2.6e-117 426.0 324 76.2
Medtr4g102440 Medicago truncatula HOM05D003763 ORTHO05D004315 5.7e-117 424.9 321 78.5
Nn1g01278 Nelumbo nucifera HOM05D003763 ORTHO05D004315 7.4e-117 424.5 323 76.8
PGSC0003DMG400012494 Solanum tuberosum HOM05D003763 ORTHO05D004315 9.7e-117 424.1 325 76.6
Sed0026462 Sechium edule HOM05D003763 ORTHO05D004315 1.3e-116 423.7 325 75.7
arahy.Tifrunner.gnm1.ann1.HFU20B Arachis hypogaea HOM05D003763 ORTHO05D004315 1.7e-116 423.3 332 77.1
BolC3t15881H Brassica oleracea HOM05D003763 ORTHO05D004315 1.7e-116 423.3 324 76.9
Oeu021144.1 Olea europaea HOM05D003763 ORTHO05D004315 1.7e-116 423.3 284 82.4
THA.LOC104806356 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 2.2e-116 422.9 327 77.1
DCAR_000890 Daucus carota HOM05D003763 ORTHO05D004315 3.7e-116 422.2 322 76.1
BcaC01g04611 Brassica carinata HOM05D003763 ORTHO05D004315 8.2e-116 421.0 324 76.9
C03p35720 Brassica napus HOM05D003763 ORTHO05D004315 8.2e-116 421.0 324 76.9
Eucgr.D01944 Eucalyptus grandis HOM05D003763 ORTHO05D004315 1.1e-115 420.6 335 75.2
Psat4g068320 Pisum sativum HOM05D003763 ORTHO05D004315 2.4e-115 419.5 321 75.7
Thhalv10028695m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 3.1e-115 419.1 327 77.1
Aa31LG9G10510 Aethionema arabicum HOM05D003763 ORTHO05D004315 5.3e-115 418.3 329 75.4
MSTRG.13805 Avicennia marina HOM05D003763 ORTHO05D004315 5.3e-115 418.3 327 74.3
Cc08_g13730 Coffea canephora HOM05D003763 ORTHO05D004315 9.1e-115 417.5 329 75.1
Aa31LG6G4960 Aethionema arabicum HOM05D003763 ORTHO05D004315 1.2e-114 417.2 330 73.6
AT4G22890 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 1.2e-114 417.2 327 74.0
BcaB01g02662 Brassica carinata HOM05D003763 ORTHO05D004315 1.2e-114 417.2 324 75.9
Sc22g0000420 Simmondsia chinensis HOM05D003763 ORTHO05D004315 1.2e-114 417.2 327 74.0
arahy.Tifrunner.gnm1.ann1.RZ3A35 Arachis hypogaea HOM05D003763 ORTHO05D004315 2.0e-114 416.4 333 76.9
Aqoxy7G00504 Aquilegia oxysepala HOM05D003763 ORTHO05D004315 2.6e-114 416.0 327 74.9
PGSC0003DMG400022731 Solanum tuberosum HOM05D003763 ORTHO05D004315 2.6e-114 416.0 324 74.4
Migut.A00895 Erythranthe guttata HOM05D003763 ORTHO05D004315 3.4e-114 415.6 318 74.8
SalBow6G0972 Salvia bowleyana HOM05D003763 ORTHO05D004315 3.4e-114 415.6 325 75.7
MELO3C014009.2 Cucumis melo HOM05D003763 ORTHO05D004315 4.5e-114 415.2 327 74.9
Hma1.2p1_0138F.1_g062780 Hydrangea macrophylla HOM05D003763 ORTHO05D004315 4.5e-114 415.2 335 72.5
Peaxi162Scf00102g01354 Petunia axillaris HOM05D003763 ORTHO05D004315 4.5e-114 415.2 326 73.9
A03p53850 Brassica napus HOM05D003763 ORTHO05D004315 5.9e-114 414.8 323 74.6
CsaV3_3G003430 Cucumis sativus L. HOM05D003763 ORTHO05D004315 5.9e-114 414.8 322 75.5
A03p29510 Brassica napus HOM05D003763 ORTHO05D004315 7.7e-114 414.5 324 75.6
BraA03t12145Z Brassica rapa HOM05D003763 ORTHO05D004315 7.7e-114 414.5 324 75.6
HanXRQChr13g0414021 Helianthus annuus HOM05D003763 ORTHO05D004315 7.7e-114 414.5 328 74.7
Nitab4.5_0010547g0050 Nicotiana tabacum HOM05D003763 ORTHO05D004315 7.7e-114 414.5 331 74.6
Rhsim07G0096500 Rhododendron simsii HOM05D003763 ORTHO05D004315 1.7e-113 413.3 380 67.6
Sopen08g028400 Solanum pennellii HOM05D003763 ORTHO05D004315 2.9e-113 412.5 323 74.3
C07p52250 Brassica napus HOM05D003763 ORTHO05D004315 3.8e-113 412.1 323 74.0
Medtr5g011220 Medicago truncatula HOM05D003763 ORTHO05D004315 3.8e-113 412.1 327 75.5
BolC7t45719H Brassica oleracea HOM05D003763 ORTHO05D004315 8.5e-113 411.0 323 74.0
CAN.G981.62 Capsicum annuum HOM05D003763 ORTHO05D004315 8.5e-113 411.0 327 74.6
Sp7g20960 Schrenkiella parvula HOM05D003763 ORTHO05D004315 1.4e-112 410.2 328 73.5
ECA240G4155 Erigeron canadensis HOM05D003763 ORTHO05D004315 1.9e-112 409.8 332 73.2
Lsat_1_v5_gn_6_8180 Lactuca sativa HOM05D003763 ORTHO05D004315 1.9e-112 409.8 330 71.8
AT4G11960 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 2.5e-112 409.5 319 75.9
Carub.0006s3106 Capsella rubella HOM05D003763 ORTHO05D004315 7.2e-112 407.9 324 74.7
CARHR254330 Cardamine hirsuta HOM05D003763 ORTHO05D004315 9.4e-112 407.5 323 74.6
PSO478G4698 Papaver somniferum HOM05D003763 ORTHO05D004315 1.2e-111 407.1 323 72.8
Thhalv10025739m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 1.6e-111 406.8 324 73.8
Hund14702 Selenicereus undatus HOM05D003763 ORTHO05D004315 1.6e-111 406.8 329 73.6
AL6G46730 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 2.1e-111 406.4 320 75.9
CDE04G2291 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 2.1e-111 406.4 342 70.8
Ca_24565_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 2.1e-111 406.4 325 73.8
PSO782G5713 Papaver somniferum HOM05D003763 ORTHO05D004315 1.8e-110 403.3 324 72.2
Carub.0007s1839 Capsella rubella HOM05D003763 ORTHO05D004315 3.0e-110 402.5 327 72.8
Ah.12g057870 Amaranthus hybridus HOM05D003763 ORTHO05D004315 3.9e-110 402.1 329 71.7
A01p14110 Brassica napus HOM05D003763 ORTHO05D004315 3.9e-110 402.1 321 72.9
BraA01t01359Z Brassica rapa HOM05D003763 ORTHO05D004315 3.9e-110 402.1 321 72.9
BcaNung01019 Brassica carinata HOM05D003763 ORTHO05D004315 5.2e-110 401.7 320 74.1
Lj2g0000892 Lotus japonicus HOM05D003763 ORTHO05D004315 5.2e-110 401.7 325 75.7
Sed0016409 Sechium edule HOM05D003763 ORTHO05D004315 5.2e-110 401.7 326 72.1
unitig_52.g17229 Utricularia gibba HOM05D003763 ORTHO05D004315 2.6e-109 399.4 313 75.1
BcaC09g51065 Brassica carinata HOM05D003763 ORTHO05D004315 4.4e-109 398.7 321 72.6
C01p17370 Brassica napus HOM05D003763 ORTHO05D004315 5.7e-109 398.3 321 72.6
BolC1t01675H Brassica oleracea HOM05D003763 ORTHO05D004315 5.7e-109 398.3 321 72.6
EL10Ac5g12684 Beta vulgaris HOM05D003763 ORTHO05D004315 1.1e-107 394.0 331 71.0
BcaNung01664 Brassica carinata HOM05D003763 ORTHO05D004315 1.8e-107 393.3 277 80.9
Actinidia27416 Actinidia chinensis HOM05D003763 ORTHO05D004315 2.0e-106 389.8 259 86.1
Lj8C243T4 Lonicera japonica HOM05D003763 ORTHO05D004315 2.6e-106 389.4 261 85.8
AUR62017330 Chenopodium quinoa HOM05D003763 ORTHO05D004315 3.5e-106 389.0 327 71.6
SalBow1G0491 Salvia bowleyana HOM05D003763 ORTHO05D004315 5.9e-106 388.3 295 77.3
Solyc08g007770.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 7.7e-106 387.9 299 77.3
AUR62010559 Chenopodium quinoa HOM05D003763 ORTHO05D004315 1.0e-105 387.5 327 71.3
CARHR229930 Cardamine hirsuta HOM05D003763 ORTHO05D004315 3.8e-105 385.6 323 71.2
Nitab4.5_0002886g0120 Nicotiana tabacum HOM05D003763 ORTHO05D004315 3.8e-105 385.6 306 67.0
PGR031G0886 Punica granatum HOM05D003763 ORTHO05D004315 1.1e-104 384.0 305 76.4
ClCG00G002290 Citrullus lanatus HOM05D003763 ORTHO05D004315 4.2e-104 382.1 300 76.3
BraA03t14454Z Brassica rapa HOM05D003763 ORTHO05D004315 2.3e-102 376.3 299 74.2
Nitab4.5_0001200g0070 Nicotiana tabacum HOM05D003763 ORTHO05D004315 2.6e-101 372.9 256 73.4
HanXRQChr03g0084111 Helianthus annuus HOM05D003763 ORTHO05D004315 5.7e-101 371.7 309 72.8
Solyc08g080050.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 1.7e-100 370.2 297 74.1
Haze_08989 Corylus avellana HOM05D003763 ORTHO05D004315 2.8e-100 369.4 305 74.8
Zm00001eb064990 Zea mays HOM05D003763 ORTHO05D004315 2.2e-97 359.8 278 74.5
Lj2A202G55 Lonicera japonica HOM05D003763 ORTHO05D004315 3.8e-97 359.0 273 74.0
ATR0661G459 Amborella trichopoda HOM05D003763 ORTHO05D004315 1.9e-96 356.7 265 75.1
arahy.Tifrunner.gnm1.ann1.N69HTX Arachis hypogaea HOM05D003763 ORTHO05D004315 3.2e-96 355.9 333 69.7
Actinidia14012 Actinidia chinensis HOM05D003763 ORTHO05D004315 8.0e-95 351.3 227 90.3
Os03g0857400 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 1.0e-94 350.9 263 76.4
Gohir.A08G176900 Gossypium hirsutum HOM05D003763 ORTHO05D004315 4.4e-93 345.5 231 87.0
AL7G30630 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 1.1e-91 340.9 231 84.8
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 1.6e-90 337.0 323 57.9
Mapoly0048s0082 Marchantia polymorpha HOM05D003763 ORTHO05D004315 3.8e-89 332.4 318 64.5
ClCG00G000150 Citrullus lanatus HOM05D003763 ORTHO05D004315 4.0e-86 322.4 324 64.2
ClCG10G003400 Citrullus lanatus HOM05D003763 ORTHO05D004315 4.0e-86 322.4 324 64.2
SEGI_18243 Sequoiadendron giganteum HOM05D003763 ORTHO05D004315 2.2e-84 316.6 267 65.2
Peaxi162Scf00620g00056 Petunia axillaris HOM05D003763 ORTHO05D004315 1.8e-83 313.5 357 59.1
Pp3c10_15390 Physcomitrium patens HOM05D003763 ORTHO05D004315 4.5e-82 308.9 271 65.7
AagrBONN_evm.TU.Sc2ySwM_362.2619 Anthoceros agrestis HOM05D003763 ORTHO05D004315 4.7e-79 298.9 252 61.1
CiPaw.11G143200 Carya illinoinensis HOM05D003763 ORTHO05D004315 6.1e-79 298.5 236 78.8
Psat2g180880 Pisum sativum HOM05D003763 ORTHO05D004315 4.4e-77 292.4 261 72.8
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 9.8e-77 291.2 250 59.6
unitig_699.g19760 Utricularia gibba HOM05D003763 ORTHO05D004315 2.9e-76 289.7 256 71.1
Dinv39038 Davidia involucrata HOM05D003763 ORTHO05D004315 4.9e-76 288.9 247 75.7
Actinidia05236 Actinidia chinensis HOM05D003763 ORTHO05D004315 8.3e-76 288.1 290 57.9
Psat6g136800 Pisum sativum HOM05D003763 ORTHO05D004315 1.0e-73 281.2 196 83.7
CBR_g23735 Chara braunii HOM05D003763 ORTHO05D004315 5.8e-61 238.8 275 47.6
Zm00001eb065010 Zea mays HOM05D003763 ORTHO05D004315 1.0e-57 228.0 149 75.8
Cre07.g340200 Chlamydomonas reinhardtii HOM05D003763 ORTHO05D004315 3.9e-57 226.1 267 50.6
CDE07G1293 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 1.3e-52 211.1 125 80.0
Glyma.12G170600 Glycine max HOM05D003763 ORTHO05D004315 1.1e-51 208.0 149 71.1
Gohir.A12G223632 Gossypium hirsutum HOM05D003763 ORTHO05D004315 4.6e-50 202.6 124 79.0
Gohir.A12G223566 Gossypium hirsutum HOM05D003763 ORTHO05D004315 3.4e-45 186.4 139 71.9
MSTRG.12034 Avicennia marina HOM05D003763 ORTHO05D004315 5.8e-45 185.7 192 69.3
CDE07G1747 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 1.1e-43 181.4 204 64.7
Actinidia02868 Actinidia chinensis HOM05D003763 ORTHO05D004315 6.4e-36 155.6 261 41.8
HPP92_014954 Vanilla planifolia HOM05D003763 ORTHO05D004315 3.3e-32 143.3 98 75.5
Zm00001eb305640 Zea mays HOM05D003763 ORTHO05D004315 1.4e-30 137.9 137 56.2
Lsat_1_v5_gn_8_1701 Lactuca sativa HOM05D003763 ORTHO05D004315 6.9e-30 135.6 94 68.1
TPR.G14577 Trifolium pratense HOM05D003763 ORTHO05D004315 6.9e-30 135.6 108 74.1
Zm00001eb065020 Zea mays HOM05D003763 ORTHO05D004315 3.3e-24 116.7 88 70.5
BcaC02g09855 Brassica carinata HOM05D003763 ORTHO05D004315 1.3e-20 104.8 167 51.5
C04p35880 Brassica napus HOM05D003763 ORTHO05D004315 4.6e-18 96.3 168 50.6
Pp3c3_19870 Physcomitrium patens HOM05D003763 ORTHO05D004315 7.4e-16 89.0 107 64.5
Os08g0526300 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 8.2e-15 85.5 83 78.3
TPR.G23383 Trifolium pratense HOM05D003424 ORTHO05D004025 1.4e-14 84.7 122 46.7
arahy.Tifrunner.gnm1.ann1.AG3Z3P Arachis hypogaea HOM05D003763 ORTHO05D004315 6.5e-12 75.9 93 45.2
CAN.G835.4 Capsicum annuum HOM05D000091 ORTHO05D003679 4.1e-06 56.6 36 80.6


User provided reference genes

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