Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G0039 Cannabis sativa HOM05D005235 ORTHO05D006938 7.3e-273 943.3 495 100.0
Eucgr.I01565 Eucalyptus grandis HOM05D005235 ORTHO05D006938 9.7e-201 703.7 453 77.9
COL.COLO4_17457 Corchorus olitorius HOM05D005235 ORTHO05D000503 1.7e-200 703.0 441 80.0
Duzib213G0463 Durio zibethinus HOM05D005235 ORTHO05D006938 1.7e-200 703.0 440 80.7
Manes.04G096400 Manihot esculenta HOM05D005235 ORTHO05D006938 2.2e-200 702.6 473 77.0
Gohir.D01G037300 Gossypium hirsutum HOM05D005235 ORTHO05D006938 2.8e-200 702.2 441 79.6
Sed0026739 Sechium edule HOM05D005235 ORTHO05D006938 3.7e-200 701.8 451 79.4
ClCG07G017190 Citrullus lanatus HOM05D005235 ORTHO05D006938 4.8e-200 701.4 498 73.7
Gohir.A01G046600 Gossypium hirsutum HOM05D005235 ORTHO05D006938 4.8e-200 701.4 460 77.2
FvH4_6g39550 Fragaria vesca HOM05D005235 ORTHO05D006938 5.3e-199 698.0 428 81.5
Gorai.002G045400 Gossypium raimondii HOM05D005235 ORTHO05D006938 7.0e-199 697.6 441 79.4
MELO3C017627.2 Cucumis melo HOM05D005235 ORTHO05D006938 1.2e-198 696.8 504 71.8
CsaV3_4G004390 Cucumis sativus L. HOM05D005235 ORTHO05D006938 2.0e-198 696.0 448 78.8
Glyma.14G202100 Glycine max HOM05D005235 ORTHO05D006938 2.6e-198 695.7 432 81.5
PGR142G4255 Punica granatum HOM05D005235 ORTHO05D006938 4.5e-198 694.9 445 78.9
Thecc.07G135900 Theobroma cacao HOM05D005235 ORTHO05D006938 5.9e-198 694.5 448 78.6
Potri.014G140400 Populus trichocarpa HOM05D005235 ORTHO05D006938 2.9e-197 692.2 515 71.5
Lalb_Chr15g0085971 Lupinus albus HOM05D005235 ORTHO05D006938 3.8e-197 691.8 524 70.6
Haze_25416 Corylus avellana HOM05D005235 ORTHO05D006938 5.0e-197 691.4 444 78.4
RcHm_v2.0_Chr7g0221241 Rosa chinensis HOM05D005235 ORTHO05D006938 5.0e-197 691.4 428 80.8
arahy.Tifrunner.gnm1.ann1.0Z73T7 Arachis hypogaea HOM05D005235 ORTHO05D006938 1.1e-196 690.3 439 79.3
TAR626G0946 Trochodendron aralioides HOM05D005235 ORTHO05D006938 2.5e-196 689.1 536 68.1
Ciclev10015023m.g Citrus clementina HOM05D005235 ORTHO05D006938 5.5e-196 688.0 467 76.0
Cfa002235 Carpinus fangiana HOM05D005235 ORTHO05D006938 7.2e-196 687.6 435 79.5
Sabra14G0105800 Salix brachista HOM05D005235 ORTHO05D006938 2.7e-195 685.6 514 70.6
CiPaw.03G253600 Carya illinoinensis HOM05D005235 ORTHO05D006938 4.7e-195 684.9 430 80.5
FvH4_5g28930 Fragaria vesca HOM05D005235 ORTHO05D006938 1.4e-194 683.3 428 79.2
VMungo0647G1084 Vigna mungo HOM05D005235 ORTHO05D006938 1.4e-194 683.3 431 79.4
Prupe.1G572900 Prunus persica HOM05D005235 ORTHO05D006938 1.8e-194 682.9 427 79.6
arahy.Tifrunner.gnm1.ann1.354T1Y Arachis hypogaea HOM05D005235 ORTHO05D006938 3.0e-194 682.2 448 77.9
FAN13G2026 Fragaria x ananassa HOM05D005235 ORTHO05D006938 3.0e-194 682.2 428 79.4
Glyma.02G234500 Glycine max HOM05D005235 ORTHO05D006938 3.0e-194 682.2 435 79.3
Aqoxy1G00862 Aquilegia oxysepala HOM05D005235 ORTHO05D006938 4.0e-194 681.8 470 74.0
MD15G1428200 Malus domestica HOM05D005235 ORTHO05D006938 1.5e-193 679.9 503 71.0
Medtr4g121070 Medicago truncatula HOM05D005235 ORTHO05D006938 2.0e-193 679.5 441 78.0
Dinv25083 Davidia involucrata HOM05D005235 ORTHO05D006938 2.6e-193 679.1 431 79.1
MD08G1236200 Malus domestica HOM05D005235 ORTHO05D006938 3.3e-193 678.7 509 69.7
PSO566G0178 Papaver somniferum HOM05D005235 ORTHO05D006938 4.4e-193 678.3 465 73.3
TPR.G24949 Trifolium pratense HOM05D005235 ORTHO05D006938 9.7e-193 677.2 520 69.4
FAN18G1214 Fragaria x ananassa HOM05D005235 ORTHO05D006938 1.7e-192 676.4 422 79.6
Nn6g33287 Nelumbo nucifera HOM05D005235 ORTHO05D006938 1.7e-192 676.4 470 74.3
Lj6g0011193 Lotus japonicus HOM05D005235 ORTHO05D006938 3.7e-192 675.2 442 77.6
QL10p019537 Quercus lobata HOM05D005235 ORTHO05D006938 3.7e-192 675.2 441 77.6
Medtr3g466250 Medicago truncatula HOM05D005235 ORTHO05D006938 8.2e-192 674.1 454 76.2
vmacro22930 Vaccinium macrocarpon HOM05D005235 ORTHO05D006938 8.2e-192 674.1 433 77.1
Ca_15026_v3 Cicer arietinum L. HOM05D005235 ORTHO05D006938 1.1e-191 673.7 472 74.4
Lj3g0002085 Lotus japonicus HOM05D005235 ORTHO05D006938 1.1e-191 673.7 474 74.1
Phvul.008G249300 Phaseolus vulgaris HOM05D005235 ORTHO05D006938 1.1e-191 673.7 462 73.8
Sc01g0007490 Simmondsia chinensis HOM05D005235 ORTHO05D006938 1.8e-191 672.9 437 76.9
PSO173G0108 Papaver somniferum HOM05D005235 ORTHO05D006938 3.1e-191 672.2 467 73.0
Psat5g150600 Pisum sativum HOM05D005235 ORTHO05D006938 5.3e-191 671.4 518 69.5
Rhsim08G0037300 Rhododendron simsii HOM05D005235 ORTHO05D006938 5.3e-191 671.4 447 74.7
Hund00893 Selenicereus undatus HOM05D005235 ORTHO05D006938 7.0e-191 671.0 424 78.3
TWI32G1353 Tripterygium wilfordii HOM05D005235 ORTHO05D006938 9.1e-191 670.6 438 77.6
THA.LOC104820931 Tarenaya hassleriana HOM05D005235 ORTHO05D006938 1.6e-190 669.8 504 67.3
Atru.BG.29.p Acer truncatum HOM05D005235 ORTHO05D006938 1.0e-189 667.2 424 80.2
FAN08G3020 Fragaria x ananassa HOM05D005235 ORTHO05D006938 1.3e-189 666.8 428 78.5
EL10Ac7g16931 Beta vulgaris HOM05D005235 ORTHO05D006938 2.9e-189 665.6 432 75.9
AT3G02660 Arabidopsis thaliana HOM05D005235 ORTHO05D006938 1.1e-188 663.7 442 75.6
Ah.08g210620 Amaranthus hybridus HOM05D005235 ORTHO05D006938 1.5e-188 663.3 427 76.6
AL3G12040 Arabidopsis lyrata HOM05D005235 ORTHO05D006938 7.2e-188 661.0 437 75.7
AUR62033498 Chenopodium quinoa HOM05D005235 ORTHO05D006938 7.2e-188 661.0 427 75.9
BNapus_Darmor_BZH_scaffold_122p00160 Brassica napus HOM05D005235 ORTHO05D006938 1.2e-187 660.2 432 75.7
Sp3g01700 Schrenkiella parvula HOM05D005235 ORTHO05D006938 1.2e-187 660.2 437 74.1
Oeu061455.1 Olea europaea HOM05D005235 ORTHO05D006938 2.1e-187 659.4 446 75.3
Cc03_g16140 Coffea canephora HOM05D005235 ORTHO05D006938 4.7e-187 658.3 455 74.9
BNapus_Darmor_BZH_scaffold_99p00190 Brassica napus HOM05D005235 ORTHO05D006938 6.1e-187 657.9 432 75.5
Lsat_1_v5_gn_6_15261 Lactuca sativa HOM05D005235 ORTHO05D006938 6.1e-187 657.9 435 74.9
BolC1t05885H Brassica oleracea HOM05D005235 ORTHO05D006938 1.0e-186 657.1 437 74.4
CSS0000006 Camellia sinensis var. sinensis HOM05D005235 ORTHO05D006938 1.0e-186 657.1 440 77.0
CSS0008907 Camellia sinensis var. sinensis HOM05D005235 ORTHO05D006938 1.0e-186 657.1 440 77.0
CARHR076660 Cardamine hirsuta HOM05D005235 ORTHO05D006938 1.0e-186 657.1 469 72.1
A03p33070 Brassica napus HOM05D005235 ORTHO05D006938 1.4e-186 656.8 437 74.8
BraA01t04625Z Brassica rapa HOM05D005235 ORTHO05D006938 1.4e-186 656.8 432 75.5
BraA03t12477Z Brassica rapa HOM05D005235 ORTHO05D006938 4.0e-186 655.2 437 74.8
BcaC01g04429 Brassica carinata HOM05D005235 ORTHO05D006938 6.8e-186 654.4 435 75.2
BolC3t16290H Brassica oleracea HOM05D005235 ORTHO05D006938 6.8e-186 654.4 435 75.2
Thhalv10020578m.g Eutrema salsugineum HOM05D005235 ORTHO05D006938 7.5e-185 651.0 440 74.5
AUR62028546 Chenopodium quinoa HOM05D005235 ORTHO05D006938 1.7e-184 649.8 427 74.5
HanXRQChr08g0226751 Helianthus annuus HOM05D005235 ORTHO05D006938 1.7e-184 649.8 432 74.5
ECA233G3576 Erigeron canadensis HOM05D005235 ORTHO05D006938 2.8e-184 649.0 437 74.8
Aa31LG5G13140 Aethionema arabicum HOM05D005235 ORTHO05D006938 2.4e-183 646.0 440 73.2
Migut.N01688 Erythranthe guttata HOM05D005235 ORTHO05D006938 1.2e-182 643.7 434 74.2
Peaxi162Scf01038g00005 Petunia axillaris HOM05D005235 ORTHO05D006938 4.5e-182 641.7 459 70.6
Migut.O00424 Erythranthe guttata HOM05D005235 ORTHO05D006938 5.9e-182 641.3 433 74.1
CAN.G192.3 Capsicum annuum HOM05D005235 ORTHO05D006938 1.0e-181 640.6 460 71.1
DCAR_005998 Daucus carota HOM05D005235 ORTHO05D006938 2.3e-181 639.4 432 72.9
SalBow4G1042 Salvia bowleyana HOM05D005235 ORTHO05D006938 1.9e-180 636.3 430 74.4
Nitab4.5_0000949g0050 Nicotiana tabacum HOM05D005235 ORTHO05D006938 1.2e-179 633.6 460 70.4
Sopen07g004450 Solanum pennellii HOM05D005235 ORTHO05D006938 1.2e-179 633.6 474 68.6
Actinidia37705 Actinidia chinensis HOM05D005235 ORTHO05D006938 2.1e-179 632.9 423 77.8
Solyc07g008530.1 Solanum lycopersicum HOM05D005235 ORTHO05D006938 2.8e-179 632.5 455 71.2
Nitab4.5_0000491g0060 Nicotiana tabacum HOM05D005235 ORTHO05D006938 3.6e-179 632.1 467 69.6
PGSC0003DMG400022992 Solanum tuberosum HOM05D005235 ORTHO05D006938 8.0e-179 630.9 464 70.5
MBI04_g19169_MAGBIO Magnolia biondii HOM05D005235 ORTHO05D006938 1.0e-178 630.6 543 61.7
CDE05G0570 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 4.4e-177 625.2 438 69.6
CDE05G2156 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 5.7e-177 624.8 439 69.9
Zm00001eb080850 Zea mays HOM05D005235 ORTHO05D006938 6.3e-176 621.3 461 68.1
Os01g0500900 Oryza sativa ssp. japonica HOM05D005235 ORTHO05D006938 3.1e-175 619.0 471 67.7
ATR0021G047 Amborella trichopoda HOM05D005235 ORTHO05D006938 9.2e-175 617.5 453 68.2
SGA_v2.0_scaffold68G22803 Striga asiatica HOM05D005235 ORTHO05D006938 3.5e-174 615.5 439 71.5
unitig_22.g5329 Utricularia gibba HOM05D005235 ORTHO05D006938 2.5e-172 609.4 427 71.9
Lj8A333T11 Lonicera japonica HOM05D005235 ORTHO05D006938 2.1e-171 606.3 446 70.0
Pp3c3_3070 Physcomitrium patens HOM05D005235 ORTHO05D006938 1.9e-164 583.2 450 64.0
Mapoly0163s0012 Marchantia polymorpha HOM05D005235 ORTHO05D006938 9.5e-164 580.9 434 64.7
SMO200G0177 Selaginella moellendorffii HOM05D005235 ORTHO05D006938 1.1e-162 577.4 431 65.4
AagrBONN_evm.TU.Sc2ySwM_368.429 Anthoceros agrestis HOM05D005235 ORTHO05D006938 1.4e-162 577.0 435 65.5
Nitab4.5_0004867g0070 Nicotiana tabacum HOM05D000907 ORTHO05D000753 2.6e-161 572.8 446 67.5
BcaB04g19392 Brassica carinata HOM05D005235 ORTHO05D006938 1.3e-160 570.5 437 67.5
MCO13G625 Micromonas commoda HOM05D005235 ORTHO05D006938 6.0e-150 535.0 446 58.5
TAR633G2758 Trochodendron aralioides HOM05D005235 ORTHO05D006938 1.3e-149 533.9 315 82.9
FAN05G2159 Fragaria x ananassa HOM05D005235 ORTHO05D006938 2.4e-146 523.1 421 65.8
SEGI_38902 Sequoiadendron giganteum HOM05D005235 ORTHO05D006938 3.1e-146 522.7 373 68.9
GSVIVG01023528001 Vitis vinifera HOM05D005235 ORTHO05D006938 2.7e-142 509.6 422 64.9
arahy.Tifrunner.gnm1.ann1.M0UG3B Arachis hypogaea HOM05D005235 ORTHO05D006938 6.6e-141 505.0 433 63.5
Cre13.g606050 Chlamydomonas reinhardtii HOM05D005235 ORTHO05D006938 4.7e-139 498.8 444 58.1
arahy.Tifrunner.gnm1.ann1.8HX8KM Arachis hypogaea HOM05D005235 ORTHO05D006938 1.2e-129 467.6 418 61.5
PRCOL_00003633 Prasinoderma coloniale HOM05D005235 ORTHO05D006938 1.5e-129 467.2 503 49.3
CBR_g10848 Chara braunii HOM05D005235 ORTHO05D006938 4.5e-129 465.7 482 51.7
Actinidia19541 Actinidia chinensis HOM05D005235 ORTHO05D006938 1.5e-116 424.1 443 56.2
FAN04G0607 Fragaria x ananassa HOM05D005235 ORTHO05D006938 2.1e-102 377.1 255 75.3
BolC1t05886H Brassica oleracea HOM05D005235 ORTHO05D006938 7.4e-84 315.5 395 47.8
Pp3s58_130 Physcomitrium patens HOM05D005235 ORTHO05D006938 6.5e-80 302.4 424 39.6
Dinv11903 Davidia involucrata HOM05D005235 ORTHO05D006938 4.2e-79 299.7 353 49.9
C03p40250 Brassica napus HOM05D005235 ORTHO05D006938 2.4e-74 283.9 191 74.3
HPP92_015556 Vanilla planifolia HOM05D005235 ORTHO05D006938 7.0e-74 282.3 249 57.0
BNapus_Darmor_BZH_scaffold_133p00140 Brassica napus HOM05D005235 ORTHO05D032674 1.6e-70 271.2 225 65.3
BcaC09g47648 Brassica carinata HOM05D005235 ORTHO05D032674 3.4e-68 263.5 328 50.9
HPP92_015557 Vanilla planifolia HOM05D005235 ORTHO05D006938 5.4e-66 256.1 174 74.1
Haze_27256 Corylus avellana HOM05D005235 ORTHO05D006938 5.2e-61 239.6 426 34.5
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 9.8e-60 235.3 455 31.4
FAN04G0381 Fragaria x ananassa HOM05D005235 ORTHO05D006938 1.0e-56 225.3 154 74.7
Oeu046079.2 Olea europaea HOM05D002040 ORTHO05D002502 4.4e-52 209.9 383 38.9
BraA01t04657Z Brassica rapa HOM05D005235 ORTHO05D032674 3.3e-39 167.2 131 67.9
CDE05G3313 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 5.2e-37 159.8 135 61.5
FAN09G2876 Fragaria x ananassa HOM05D005235 ORTHO05D006938 2.9e-35 154.1 96 77.1
arahy.Tifrunner.gnm1.ann1.J19R9Y Arachis hypogaea HOM05D005235 ORTHO05D038945 2.1e-22 111.3 57 93.0
Thecc.07G136200 Theobroma cacao HOM05D005235 ORTHO05D006938 2.8e-22 110.9 76 71.1
SEGI_05348 Sequoiadendron giganteum HOM05D005235 ORTHO05D006938 8.1e-22 109.4 67 77.6
Oeu059313.1 Olea europaea HOM05D005235 ORTHO05D006938 2.4e-21 107.8 78 66.7
TAR633G1966 Trochodendron aralioides HOM05D005235 ORTHO05D006938 3.4e-20 104.0 93 61.3
Nn1g04561 Nelumbo nucifera HOM05D005235 ORTHO05D038945 5.8e-20 103.2 86 67.4
SEGI_33043 Sequoiadendron giganteum HOM05D005235 ORTHO05D008256 7.8e-17 92.8 70 61.4
BNapus_Darmor_BZH_scaffold_119p00120 Brassica napus HOM05D005235 ORTHO05D006938 3.6e-14 84.0 49 79.6
BNapus_Darmor_BZH_scaffold_97p00310 Brassica napus HOM05D005235 ORTHO05D006938 3.6e-14 84.0 49 79.6
Oeu038380.1 Olea europaea HOM05D007843 ORTHO05D003639 5.3e-13 80.1 88 48.9
BolC1t05887H Brassica oleracea HOM05D005235 ORTHO05D014124 5.8e-12 76.6 73 61.6
SEGI_20498 Sequoiadendron giganteum HOM05D037692 ORTHO05D385547 4.8e-06 57.0 47 59.6


User provided reference genes

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