Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G2533 Cannabis sativa HOM05D006076 ORTHO05D007506 1.1e-217 759.6 365 100.0
CiPaw.11G066500 Carya illinoinensis HOM05D006076 ORTHO05D007506 2.5e-145 519.2 363 68.3
Dinv19079 Davidia involucrata HOM05D006076 ORTHO05D007506 7.3e-145 517.7 358 68.4
MD15G1436000 Malus domestica HOM05D006076 ORTHO05D007506 7.3e-145 517.7 363 69.7
RcHm_v2.0_Chr7g0220631 Rosa chinensis HOM05D006076 ORTHO05D007506 6.8e-143 511.1 354 69.2
FAN08G1959 Fragaria x ananassa HOM05D006076 ORTHO05D007506 8.9e-143 510.8 362 68.0
FAN04G0499 Fragaria x ananassa HOM05D006076 ORTHO05D007506 1.2e-142 510.4 362 68.2
MD08G1242300 Malus domestica HOM05D006076 ORTHO05D007506 1.5e-142 510.0 367 68.1
Rhsim10G0185200 Rhododendron simsii HOM05D006076 ORTHO05D007506 2.6e-142 509.2 360 68.1
Thecc.04G060400 Theobroma cacao HOM05D006076 ORTHO05D007506 3.4e-142 508.8 360 66.4
QL04p075342 Quercus lobata HOM05D006076 ORTHO05D007506 7.5e-142 507.7 360 67.8
Ciclev10005246m.g Citrus clementina HOM05D006076 ORTHO05D007506 3.7e-141 505.4 363 68.6
FvH4_5g28670 Fragaria vesca HOM05D006076 ORTHO05D007506 2.4e-140 502.7 360 69.4
CSS0031022 Camellia sinensis var. sinensis HOM05D006076 ORTHO05D007506 5.4e-140 501.5 369 66.4
FAN18G0334 Fragaria x ananassa HOM05D006076 ORTHO05D007506 5.4e-140 501.5 360 69.2
Hma1.2p1_0034F.1_g021380 Hydrangea macrophylla HOM05D006076 ORTHO05D007506 1.6e-139 500.0 356 66.9
Lalb_Chr17g0345871 Lupinus albus HOM05D006076 ORTHO05D007506 2.7e-139 499.2 365 66.0
TWI74G1437 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 1.3e-138 496.9 360 64.7
Actinidia17164 Actinidia chinensis HOM05D006076 ORTHO05D007506 1.7e-138 496.5 361 66.8
arahy.Tifrunner.gnm1.ann1.T03I92 Arachis hypogaea HOM05D006076 ORTHO05D007506 6.6e-138 494.6 361 65.9
RcHm_v2.0_Chr2g0106631 Rosa chinensis HOM05D006076 ORTHO05D007506 6.6e-138 494.6 357 68.1
arahy.Tifrunner.gnm1.ann1.19NIP2 Arachis hypogaea HOM05D006076 ORTHO05D007506 8.6e-138 494.2 361 66.2
COL.COLO4_20049 Corchorus olitorius HOM05D006076 ORTHO05D007506 8.6e-138 494.2 358 68.2
TWI53G1019 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 4.7e-136 488.4 360 64.4
GSVIVG01013049001 Vitis vinifera HOM05D006076 ORTHO05D007506 2.3e-135 486.1 362 65.5
Nitab4.5_0002648g0050 Nicotiana tabacum HOM05D006076 ORTHO05D007506 3.1e-135 485.7 360 65.6
Glyma.14G210200 Glycine max HOM05D006076 ORTHO05D007506 4.0e-135 485.3 360 65.3
Gohir.D11G176000 Gossypium hirsutum HOM05D006076 ORTHO05D007506 6.8e-135 484.6 357 66.7
Cc07_g12790 Coffea canephora HOM05D006076 ORTHO05D007506 8.9e-135 484.2 363 64.5
Potri.017G139700 Populus trichocarpa HOM05D006076 ORTHO05D007506 1.2e-134 483.8 358 62.8
Phvul.008G241000 Phaseolus vulgaris HOM05D006076 ORTHO05D007506 2.6e-134 482.6 366 63.1
DCAR_003407 Daucus carota HOM05D006076 ORTHO05D007506 3.4e-134 482.3 363 64.2
Nitab4.5_0000005g0100 Nicotiana tabacum HOM05D006076 ORTHO05D007506 3.4e-134 482.3 360 65.0
TPR.G5335 Trifolium pratense HOM05D006076 ORTHO05D007506 4.4e-134 481.9 358 64.2
LjContig00141g0009861 Lotus japonicus HOM05D006076 ORTHO05D007506 1.7e-133 479.9 357 65.0
TAR629G1722 Trochodendron aralioides HOM05D006076 ORTHO05D007506 2.9e-133 479.2 364 64.6
Cfa019426 Carpinus fangiana HOM05D006076 ORTHO05D007506 3.7e-133 478.8 335 67.2
Psat2g042920 Pisum sativum HOM05D006076 ORTHO05D007506 3.7e-133 478.8 358 64.2
Manes.01G123200 Manihot esculenta HOM05D006076 ORTHO05D007506 6.4e-133 478.0 360 62.5
Sopen02g011760 Solanum pennellii HOM05D006076 ORTHO05D007506 6.4e-133 478.0 357 62.5
Glyma.02G240700 Glycine max HOM05D006076 ORTHO05D007506 8.3e-133 477.6 362 63.8
Sabra17G0117900 Salix brachista HOM05D006076 ORTHO05D007506 1.1e-132 477.2 357 61.3
Ca_05760_v3 Cicer arietinum L. HOM05D006076 ORTHO05D007506 2.4e-132 476.1 361 62.9
SGA_v2.0_scaffold115G32050 Striga asiatica HOM05D006076 ORTHO05D007506 2.1e-131 473.0 358 62.3
PGR042G3996 Punica granatum HOM05D006076 ORTHO05D007506 1.7e-130 469.9 366 62.0
VMungo0647G0600 Vigna mungo HOM05D006076 ORTHO05D007506 2.3e-130 469.5 355 63.4
THA.LOC104820862 Tarenaya hassleriana HOM05D006076 ORTHO05D007506 5.1e-130 468.4 363 60.9
Eucgr.J01641 Eucalyptus grandis HOM05D006076 ORTHO05D007506 4.3e-129 465.3 364 61.5
AUR62004772 Chenopodium quinoa HOM05D006076 ORTHO05D007506 1.6e-128 463.4 355 63.9
PSO782G3474 Papaver somniferum HOM05D006076 ORTHO05D007506 4.7e-128 461.8 362 61.6
PSO063G3081 Papaver somniferum HOM05D006076 ORTHO05D007506 2.4e-127 459.5 362 61.3
Solyc02g036380.3 Solanum lycopersicum HOM05D006076 ORTHO05D007506 5.2e-127 458.4 406 55.2
MSTRG.15638 Avicennia marina HOM05D006076 ORTHO05D007506 6.8e-127 458.0 360 59.2
Sc09g0004490 Simmondsia chinensis HOM05D006076 ORTHO05D007506 1.5e-126 456.8 362 60.8
Medtr5g076920 Medicago truncatula HOM05D006076 ORTHO05D007506 2.6e-126 456.1 369 60.2
EL10Ac4g08929 Beta vulgaris HOM05D006076 ORTHO05D007506 3.4e-126 455.7 355 62.3
vmacro20467 Vaccinium macrocarpon HOM05D006076 ORTHO05D007506 5.8e-126 454.9 483 50.7
Gorai.007G188600 Gossypium raimondii HOM05D006076 ORTHO05D007506 7.6e-126 454.5 431 55.2
HanXRQChr16g0532291 Helianthus annuus HOM05D006076 ORTHO05D007506 9.9e-126 454.1 359 61.0
Lsat_1_v5_gn_3_67061 Lactuca sativa HOM05D006076 ORTHO05D007506 6.4e-125 451.4 358 61.2
Manes.02G080800 Manihot esculenta HOM05D006076 ORTHO05D007506 3.2e-124 449.1 360 60.6
ClCG05G010470 Citrullus lanatus HOM05D006076 ORTHO05D007506 5.4e-124 448.4 365 61.1
MELO3C019565.2 Cucumis melo HOM05D006076 ORTHO05D007506 7.1e-124 448.0 359 60.7
Migut.K00743 Erythranthe guttata HOM05D006076 ORTHO05D007506 2.7e-123 446.0 360 61.1
SalBow5G0086 Salvia bowleyana HOM05D006076 ORTHO05D007506 1.3e-122 443.7 354 59.6
SalBow5G5467 Salvia bowleyana HOM05D006076 ORTHO05D007506 1.3e-122 443.7 354 59.6
Aqoxy3G04116 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 1.7e-122 443.4 359 59.9
Thhalv10014026m.g Eutrema salsugineum HOM05D006076 ORTHO05D007506 2.3e-122 443.0 360 59.7
RcHm_v2.0_Chr5g0080521 Rosa chinensis HOM05D006076 ORTHO05D007506 3.9e-122 442.2 308 69.5
Duzib138G0191 Durio zibethinus HOM05D006076 ORTHO05D007506 5.1e-122 441.8 360 60.8
AL6G28370 Arabidopsis lyrata HOM05D006076 ORTHO05D007506 6.6e-122 441.4 360 58.3
unitig_0.g2639 Utricularia gibba HOM05D006076 ORTHO05D007506 6.6e-122 441.4 358 57.5
BcaC03g18547 Brassica carinata HOM05D006076 ORTHO05D007506 1.1e-121 440.7 362 58.6
Sp6g26940 Schrenkiella parvula HOM05D006076 ORTHO05D007506 2.5e-121 439.5 361 59.3
CsaV3_3G018020 Cucumis sativus L. HOM05D006076 ORTHO05D007506 4.3e-121 438.7 364 60.2
AT5G17290 Arabidopsis thaliana HOM05D006076 ORTHO05D007506 9.6e-121 437.6 360 58.1
Oeu012318.2 Olea europaea HOM05D006076 ORTHO05D007506 9.6e-121 437.6 428 52.1
BraA02t05373Z Brassica rapa HOM05D006076 ORTHO05D007506 2.1e-120 436.4 363 58.1
CAN.G123.2 Capsicum annuum HOM05D006076 ORTHO05D007506 4.8e-120 435.3 341 62.2
C02p08950 Brassica napus HOM05D006076 ORTHO05D007506 8.1e-120 434.5 363 57.9
BolC2t06804H Brassica oleracea HOM05D006076 ORTHO05D007506 8.1e-120 434.5 363 57.9
Carub.0006s1548 Capsella rubella HOM05D006076 ORTHO05D007506 2.4e-119 433.0 361 57.6
CARHR195920 Cardamine hirsuta HOM05D006076 ORTHO05D007506 2.4e-119 433.0 360 57.2
A02p04100 Brassica napus HOM05D006076 ORTHO05D007506 9.0e-119 431.0 361 58.2
Aa31LG11G12390 Aethionema arabicum HOM05D006076 ORTHO05D007506 3.4e-118 429.1 360 58.1
BcaC04g18810 Brassica carinata HOM05D006076 ORTHO05D007506 4.4e-118 428.7 364 56.6
BcaB08g36791 Brassica carinata HOM05D006076 ORTHO05D007506 2.2e-117 426.4 358 57.5
BolC9t58826H Brassica oleracea HOM05D006076 ORTHO05D007506 1.1e-116 424.1 364 56.6
Lj4A252G57 Lonicera japonica HOM05D006076 ORTHO05D007506 7.1e-116 421.4 331 63.4
BraA10t44270Z Brassica rapa HOM05D006076 ORTHO05D007506 3.5e-115 419.1 366 55.5
A10p22110 Brassica napus HOM05D006076 ORTHO05D007506 4.6e-115 418.7 366 55.7
Solyc06g043140.4 Solanum lycopersicum HOM05D006076 ORTHO05D007506 3.0e-114 416.0 353 57.5
ATR0807G042 Amborella trichopoda HOM05D006076 ORTHO05D007506 4.8e-112 408.7 360 56.1
C09p59900 Brassica napus HOM05D006076 ORTHO05D007506 2.6e-110 402.9 409 50.6
Gohir.A11G169800 Gossypium hirsutum HOM05D006076 ORTHO05D007506 9.9e-110 401.0 357 58.5
Sed0003951 Sechium edule HOM05D006076 ORTHO05D007506 7.1e-108 394.8 358 56.7
CDE04G2995 Ceratophyllum demersum HOM05D006076 ORTHO05D007506 1.6e-107 393.7 346 56.1
Atru.chr1.2153 Acer truncatum HOM05D006076 ORTHO05D007506 3.5e-107 392.5 261 70.5
Os02g0117800 Oryza sativa ssp. japonica HOM05D006076 ORTHO05D007506 6.0e-107 391.7 355 53.2
ECA246G5189 Erigeron canadensis HOM05D006076 ORTHO05D000091 1.5e-105 387.1 286 63.6
SEGI_25199 Sequoiadendron giganteum HOM05D006076 ORTHO05D007506 3.4e-102 375.9 386 49.2
Hund22204 Selenicereus undatus HOM05D006076 ORTHO05D007506 5.5e-100 368.6 351 55.3
Zm00001eb230080 Zea mays HOM05D006076 ORTHO05D007506 9.3e-100 367.9 356 50.3
Peaxi162Scf00294g00628 Petunia axillaris HOM05D006076 ORTHO05D007506 3.0e-98 362.8 352 53.7
Ah.05g177670 Amaranthus hybridus HOM05D006076 ORTHO05D007506 1.1e-95 354.4 323 56.3
Actinidia40417 Actinidia chinensis HOM05D006076 ORTHO05D007506 2.4e-95 353.2 240 68.8
Prupe.1G579800 Prunus persica HOM05D006076 ORTHO05D007506 8.4e-93 344.7 204 77.9
Nn4g24719 Nelumbo nucifera HOM05D006076 ORTHO05D007506 2.1e-91 340.1 296 57.1
Mapoly0019s0054 Marchantia polymorpha HOM05D006076 ORTHO05D007506 1.0e-90 337.8 426 42.3
AUR62037480 Chenopodium quinoa HOM05D006076 ORTHO05D007506 1.2e-86 324.3 207 72.0
MBI06_g30602_MAGBIO Magnolia biondii HOM05D006076 ORTHO05D007506 1.1e-84 317.8 288 56.2
Pp3c4_11110 Physcomitrium patens HOM05D006076 ORTHO05D007506 1.4e-82 310.8 374 43.9
AagrBONN_evm.TU.Sc2ySwM_344.1639 Anthoceros agrestis HOM05D006076 ORTHO05D007506 8.2e-80 301.6 414 39.6
Cpa.g.sc178.26 Carica papaya HOM05D006076 ORTHO05D007506 5.9e-78 295.4 154 83.8
Haze_08537 Corylus avellana HOM05D006076 ORTHO05D007506 3.2e-76 289.7 359 46.0
SMO116G0154 Selaginella moellendorffii HOM05D006076 ORTHO05D007506 3.1e-71 273.1 361 39.1
QL04p075158 Quercus lobata HOM05D006076 ORTHO05D007506 3.5e-70 269.6 235 58.7
QL04p075308 Quercus lobata HOM05D006076 ORTHO05D007506 8.2e-64 248.4 132 81.8
TAR629G0059 Trochodendron aralioides HOM05D006076 ORTHO05D007506 1.2e-62 244.6 126 81.7
HPP92_002577 Vanilla planifolia HOM05D006076 ORTHO05D007506 3.8e-53 213.0 262 43.9
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 3.8e-53 213.0 262 43.9
CBR_g50474 Chara braunii HOM05D001161 ORTHO05D000497 4.4e-41 172.9 130 53.8
Cpa.g.sc178.27 Carica papaya HOM05D006076 ORTHO05D007506 3.7e-40 169.9 155 55.5
HanXRQChr02g0046461 Helianthus annuus HOM05D006076 ORTHO05D007506 8.3e-40 168.7 207 45.4
HanXRQChr16g0508921 Helianthus annuus HOM05D006076 ORTHO05D007506 1.1e-39 168.3 206 45.6
QL04p043726 Quercus lobata HOM05D000176 ORTHO05D007506 1.0e-37 161.8 83 85.5
BcaNung00408 Brassica carinata HOM05D006076 ORTHO05D007506 3.4e-33 146.7 214 42.5
QL04p075322 Quercus lobata HOM05D006076 ORTHO05D007506 4.6e-30 136.3 79 77.2
QL04p075364 Quercus lobata HOM05D000397 ORTHO05D007506 6.4e-24 115.9 121 51.2
Aqoxy531s001 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 4.6e-22 109.8 151 45.0
Cre14.g630907 Chlamydomonas reinhardtii HOM05D006076 ORTHO05D007506 3.6e-19 100.1 197 31.5
AUR62037479 Chenopodium quinoa HOM05D006076 ORTHO05D007506 1.2e-17 95.1 126 45.2
Actinidia40416 Actinidia chinensis HOM05D006076 ORTHO05D007506 3.5e-14 83.6 109 45.0


User provided reference genes

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