Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G2347 Cannabis sativa HOM05D003562 ORTHO05D004074 1.2e-160 569.7 279 100.0
CANSAT11G2219 Cannabis sativa HOM05D003562 ORTHO05D004074 5.2e-127 458.0 275 82.5
CANSAT11G1241 Cannabis sativa HOM05D003562 ORTHO05D004074 2.0e-78 296.6 292 57.2
CANSAT01G2732 Cannabis sativa HOM05D003562 ORTHO05D004074 4.4e-65 252.3 297 51.5
CANSAT35G1715 Cannabis sativa HOM05D003562 ORTHO05D004074 3.7e-32 142.9 164 48.2
Ah.04g155210 Amaranthus hybridus HOM05D003562 ORTHO05D004074 7.0e-31 138.7 220 38.2
Ah.04g155220 Amaranthus hybridus HOM05D003562 ORTHO05D004074 3.0e-29 133.3 220 37.3
CDE12G0865 Ceratophyllum demersum HOM05D003562 ORTHO05D004074 5.0e-29 132.5 177 44.6
Haze_03073 Corylus avellana HOM05D003562 ORTHO05D004074 2.5e-28 130.2 208 38.5
Hma1.2p1_1396F.1_g280630 Hydrangea macrophylla HOM05D003562 ORTHO05D004074 1.6e-27 127.5 219 36.5
Sabra03G0147400 Salix brachista HOM05D003562 ORTHO05D004074 1.6e-27 127.5 216 35.2
Duzib128G0310 Durio zibethinus HOM05D003562 ORTHO05D004074 2.1e-27 127.1 161 41.6
CDE01G0515 Ceratophyllum demersum HOM05D003562 ORTHO05D004074 4.7e-27 125.9 161 42.9
AUR62037195 Chenopodium quinoa HOM05D003562 ORTHO05D004074 6.2e-27 125.6 198 37.9
Glyma.06G083300 Glycine max HOM05D003562 ORTHO05D004074 6.2e-27 125.6 218 37.6
MD06G1045900 Malus domestica HOM05D003562 ORTHO05D004074 6.2e-27 125.6 220 37.3
Glyma.11G154000 Glycine max HOM05D003562 ORTHO05D004074 8.0e-27 125.2 218 37.6
vmacro13748 Vaccinium macrocarpon HOM05D003562 ORTHO05D004074 8.0e-27 125.2 164 40.2
ECA233G2618 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.1e-26 124.8 178 39.3
MD02G1270100 Malus domestica HOM05D003562 ORTHO05D004074 1.4e-26 124.4 222 36.5
Atru.chr12.1362 Acer truncatum HOM05D003562 ORTHO05D004074 1.8e-26 124.0 160 43.8
Cfa010886 Carpinus fangiana HOM05D003562 ORTHO05D004074 1.8e-26 124.0 208 37.5
PSO384G3387 Papaver somniferum HOM05D003562 ORTHO05D004074 2.3e-26 123.6 161 41.6
Rhsim07G0066600 Rhododendron simsii HOM05D003562 ORTHO05D004074 3.1e-26 123.2 226 33.6
Prupe.7G009600 Prunus persica HOM05D003562 ORTHO05D004074 4.0e-26 122.9 217 36.9
RhsimUnG0111400 Rhododendron simsii HOM05D003562 ORTHO05D004074 4.0e-26 122.9 226 33.6
TAR636G2713 Trochodendron aralioides HOM05D003562 ORTHO05D004074 4.0e-26 122.9 164 42.7
CSS0045780 Camellia sinensis var. sinensis HOM05D003562 ORTHO05D004074 5.2e-26 122.5 223 32.7
Phvul.005G028600 Phaseolus vulgaris HOM05D003562 ORTHO05D004074 5.2e-26 122.5 198 37.4
QL04p014579 Quercus lobata HOM05D003562 ORTHO05D004074 5.2e-26 122.5 248 35.1
Ca_27897_v3 Cicer arietinum L. HOM05D003562 ORTHO05D004074 6.8e-26 122.1 218 36.2
HanXRQChr12g0359541 Helianthus annuus HOM05D003562 ORTHO05D004074 6.8e-26 122.1 235 34.0
Peaxi162Scf00025g00152 Petunia axillaris HOM05D003562 ORTHO05D004074 8.9e-26 121.7 163 38.7
Peaxi162Scf00128g00115 Petunia axillaris HOM05D003562 ORTHO05D004074 8.9e-26 121.7 163 38.7
Sc10g0004400 Simmondsia chinensis HOM05D003562 ORTHO05D004074 8.9e-26 121.7 224 36.2
Actinidia06246 Actinidia chinensis HOM05D003562 ORTHO05D004074 1.2e-25 121.3 164 39.6
AL8G36050 Arabidopsis lyrata HOM05D003562 ORTHO05D004074 1.2e-25 121.3 164 36.0
Carub.0008s2023 Capsella rubella HOM05D003562 ORTHO05D004074 1.2e-25 121.3 220 30.9
Gorai.011G213800 Gossypium raimondii HOM05D003562 ORTHO05D004074 1.2e-25 121.3 164 40.9
QL04p014940 Quercus lobata HOM05D003562 ORTHO05D004074 1.2e-25 121.3 214 37.4
Cc01_g07880 Coffea canephora HOM05D003562 ORTHO05D004074 1.5e-25 120.9 161 41.6
Potri.003G198000 Populus trichocarpa HOM05D003562 ORTHO05D004074 1.5e-25 120.9 220 34.5
AT5G59560 Arabidopsis thaliana HOM05D003562 ORTHO05D004074 2.0e-25 120.6 164 34.8
CSS0041933 Camellia sinensis var. sinensis HOM05D003562 ORTHO05D004074 2.0e-25 120.6 223 32.7
Cpa.g.sc30.42 Carica papaya HOM05D003562 ORTHO05D004074 2.0e-25 120.6 225 35.6
Cc00_g22970 Coffea canephora HOM05D003562 ORTHO05D004074 2.0e-25 120.6 216 34.7
Gohir.A10G183700 Gossypium hirsutum HOM05D003562 ORTHO05D004074 2.0e-25 120.6 168 39.9
Lsat_1_v5_gn_6_15520 Lactuca sativa HOM05D003562 ORTHO05D004074 2.0e-25 120.6 220 35.9
THA.LOC104807160 Tarenaya hassleriana HOM05D003562 ORTHO05D004074 2.0e-25 120.6 223 33.6
CSS0019906 Camellia sinensis var. sinensis HOM05D003562 ORTHO05D004074 2.6e-25 120.2 223 32.7
PSO339G2283 Papaver somniferum HOM05D003562 ORTHO05D004074 2.6e-25 120.2 161 39.8
Potri.001G026700 Populus trichocarpa HOM05D003562 ORTHO05D004074 2.6e-25 120.2 230 36.1
MSTRG.16988 Avicennia marina HOM05D003562 ORTHO05D004074 3.4e-25 119.8 164 39.6
Gohir.D10G190700 Gossypium hirsutum HOM05D003562 ORTHO05D004074 3.4e-25 119.8 164 40.2
Manes.04G160200 Manihot esculenta HOM05D003562 ORTHO05D004074 3.4e-25 119.8 226 33.6
CiPaw.14G007100 Carya illinoinensis HOM05D003562 ORTHO05D004074 4.4e-25 119.4 156 43.6
Potri.T125306 Populus trichocarpa HOM05D003562 ORTHO05D004074 4.4e-25 119.4 220 34.1
CARHR273020 Cardamine hirsuta HOM05D003562 ORTHO05D004074 7.5e-25 118.6 164 33.5
Eucgr.G03239 Eucalyptus grandis HOM05D003562 ORTHO05D004074 7.5e-25 118.6 176 40.9
VMungo1080G1790 Vigna mungo HOM05D003562 ORTHO05D004074 7.5e-25 118.6 194 36.6
CiPaw.13G012700 Carya illinoinensis HOM05D003562 ORTHO05D004074 9.8e-25 118.2 169 42.0
Dinv09273 Davidia involucrata HOM05D003562 ORTHO05D004074 9.8e-25 118.2 161 39.1
Gohir.D10G190150 Gossypium hirsutum HOM05D003562 ORTHO05D004074 9.8e-25 118.2 231 32.5
Gohir.D10G190200 Gossypium hirsutum HOM05D003562 ORTHO05D004074 9.8e-25 118.2 231 32.5
Nn2g14890 Nelumbo nucifera HOM05D003562 ORTHO05D004074 9.8e-25 118.2 214 34.1
TAR636G0244 Trochodendron aralioides HOM05D003562 ORTHO05D004074 9.8e-25 118.2 172 40.7
Duzib114G0768 Durio zibethinus HOM05D003562 ORTHO05D004074 1.3e-24 117.9 164 37.8
TAR636G1695 Trochodendron aralioides HOM05D003562 ORTHO05D004074 1.3e-24 117.9 172 41.3
Migut.N01839 Erythranthe guttata HOM05D003562 ORTHO05D004074 1.7e-24 117.5 161 39.8
FvH4_5g25300 Fragaria vesca HOM05D003562 ORTHO05D004074 1.7e-24 117.5 173 39.3
FAN18G1494 Fragaria x ananassa HOM05D003562 ORTHO05D004074 1.7e-24 117.5 173 39.3
Sopen11g001270 Solanum pennellii HOM05D003562 ORTHO05D004074 1.7e-24 117.5 163 38.0
ATR0763G113 Amborella trichopoda HOM05D003562 ORTHO05D004074 2.2e-24 117.1 219 33.8
FAN04G2150 Fragaria x ananassa HOM05D003562 ORTHO05D004074 2.2e-24 117.1 173 39.3
FAN13G2751 Fragaria x ananassa HOM05D003562 ORTHO05D004074 2.2e-24 117.1 173 39.3
CsaV3_5G024840 Cucumis sativus L. HOM05D003562 ORTHO05D004074 2.9e-24 116.7 154 41.6
TAR636G2742 Trochodendron aralioides HOM05D003562 ORTHO05D004074 2.9e-24 116.7 164 40.2
Aqoxy1G00347 Aquilegia oxysepala HOM05D003562 ORTHO05D004074 3.7e-24 116.3 164 41.5
Nitab4.5_0000320g0220 Nicotiana tabacum HOM05D003562 ORTHO05D004074 3.7e-24 116.3 163 38.7
Oeu015695.4 Olea europaea HOM05D003562 ORTHO05D004074 3.7e-24 116.3 169 38.5
Solyc11g005260.2 Solanum lycopersicum HOM05D003562 ORTHO05D004074 3.7e-24 116.3 163 37.4
GSVIVG01037424001 Vitis vinifera HOM05D003562 ORTHO05D004074 6.4e-24 115.5 160 38.8
COL.COLO4_07204 Corchorus olitorius HOM05D003562 ORTHO05D004074 8.3e-24 115.2 164 39.0
SalBow7G2199 Salvia bowleyana HOM05D003562 ORTHO05D004074 8.3e-24 115.2 161 37.9
DCAR_022850 Daucus carota HOM05D003562 ORTHO05D004074 1.1e-23 114.8 194 36.1
Ciclev10029023m.g Citrus clementina HOM05D003562 ORTHO05D004074 1.9e-23 114.0 203 36.5
TWI32G0119 Tripterygium wilfordii HOM05D003562 ORTHO05D004074 1.9e-23 114.0 194 36.6
BcaB05g22520 Brassica carinata HOM05D003562 ORTHO05D004074 2.4e-23 113.6 222 31.1
Thhalv10014282m.g Eutrema salsugineum HOM05D003562 ORTHO05D004074 2.4e-23 113.6 164 33.5
Lj8P275T68 Lonicera japonica HOM05D003562 ORTHO05D004074 2.4e-23 113.6 161 38.5
Thecc.10G162500 Theobroma cacao HOM05D003562 ORTHO05D004074 4.1e-23 112.8 164 39.0
TPR.G17800 Trifolium pratense HOM05D003562 ORTHO05D004074 4.1e-23 112.8 198 36.9
TAR636G1892 Trochodendron aralioides HOM05D003562 ORTHO05D004074 4.1e-23 112.8 152 42.8
BcaC04g19758 Brassica carinata HOM05D003562 ORTHO05D004074 7.0e-23 112.1 220 30.0
C02p12410 Brassica napus HOM05D003562 ORTHO05D004074 7.0e-23 112.1 222 29.7
C09p51940 Brassica napus HOM05D003562 ORTHO05D004074 7.0e-23 112.1 220 30.0
BolC9t58057H Brassica oleracea HOM05D003562 ORTHO05D004074 7.0e-23 112.1 220 30.0
Nitab4.5_0010864g0010 Nicotiana tabacum HOM05D003562 ORTHO05D004074 7.0e-23 112.1 146 42.5
ClCG01G007760 Citrullus lanatus HOM05D003562 ORTHO05D004074 9.2e-23 111.7 173 37.6
Lalb_Chr03g0032801 Lupinus albus HOM05D003562 ORTHO05D004074 9.2e-23 111.7 225 32.4
A02p07060 Brassica napus HOM05D003562 ORTHO05D004074 1.2e-22 111.3 222 30.2
BraA02t05786Z Brassica rapa HOM05D003562 ORTHO05D004074 1.2e-22 111.3 222 30.2
MELO3C005120.2 Cucumis melo HOM05D003562 ORTHO05D004074 1.6e-22 110.9 204 34.3
BcaC03g14002 Brassica carinata HOM05D003562 ORTHO05D004074 2.0e-22 110.5 222 30.6
BolC2t07341H Brassica oleracea HOM05D003562 ORTHO05D004074 2.0e-22 110.5 222 30.6
arahy.Tifrunner.gnm1.ann1.T72YSL Arachis hypogaea HOM05D003562 ORTHO05D004074 2.7e-22 110.2 164 36.0
Lj3g0004154 Lotus japonicus HOM05D003562 ORTHO05D004074 2.7e-22 110.2 217 33.6
Sp6g21260 Schrenkiella parvula HOM05D003562 ORTHO05D004074 2.7e-22 110.2 220 29.1
Aa31LG1G11810 Aethionema arabicum HOM05D000959 ORTHO05D000775 4.6e-22 109.4 214 28.5
PGR142G2845 Punica granatum HOM05D003562 ORTHO05D004074 4.6e-22 109.4 169 34.9
BcaB07g34157 Brassica carinata HOM05D003562 ORTHO05D004074 6.0e-22 109.0 218 29.4
BcaB08g36248 Brassica carinata HOM05D003562 ORTHO05D004074 7.8e-22 108.6 223 28.7
A10p16750 Brassica napus HOM05D003562 ORTHO05D004074 7.8e-22 108.6 220 30.0
Medtr3g017470 Medicago truncatula HOM05D003562 ORTHO05D004074 7.8e-22 108.6 160 35.6
SHI01272 Sapria himalayana HOM05D003562 ORTHO05D004074 2.3e-21 107.1 160 40.0
SGA_v2.0_scaffold71G23983 Striga asiatica HOM05D003562 ORTHO05D004074 3.0e-21 106.7 162 35.2
CAN.G1074.6 Capsicum annuum HOM05D003562 ORTHO05D004074 3.9e-21 106.3 163 36.2
Psat5g217800 Pisum sativum HOM05D003562 ORTHO05D004074 3.9e-21 106.3 170 38.8
BraA10t43756Z Brassica rapa HOM05D003562 ORTHO05D004074 5.0e-21 105.9 222 28.8
Sed0007359 Sechium edule HOM05D003562 ORTHO05D004074 5.0e-21 105.9 160 36.9
ECA247G0148 Erigeron canadensis HOM05D003562 ORTHO05D004074 8.6e-21 105.1 145 42.1
unitig_26.g9509 Utricularia gibba HOM05D003562 ORTHO05D004074 5.6e-20 102.4 120 43.3
BolC2t11811H Brassica oleracea HOM05D003562 ORTHO05D004074 2.8e-19 100.1 134 35.8
HPP92_000706 Vanilla planifolia HOM05D003562 ORTHO05D004074 1.8e-18 97.4 162 38.3
Actinidia10167 Actinidia chinensis HOM05D003562 ORTHO05D004074 2.3e-18 97.1 110 44.5
unitig_747.g21707 Utricularia gibba HOM05D003562 ORTHO05D004074 2.3e-18 97.1 174 34.5
AagrBONN_evm.TU.Sc2ySwM_362.1627 Anthoceros agrestis HOM05D003562 ORTHO05D004074 5.2e-18 95.9 111 45.0
HPP92_000641 Vanilla planifolia HOM05D003562 ORTHO05D004074 6.8e-18 95.5 153 39.2
PGSC0003DMG400006062 Solanum tuberosum HOM05D003562 ORTHO05D004074 2.0e-17 94.0 167 34.1
Mapoly0008s0158 Marchantia polymorpha HOM05D003562 ORTHO05D004074 3.4e-17 93.2 168 36.3
Nitab4.5_0004377g0020 Nicotiana tabacum HOM05D003562 ORTHO05D004074 3.4e-17 93.2 220 28.2
Nitab4.5_0002396g0040 Nicotiana tabacum HOM05D003562 ORTHO05D004074 4.4e-17 92.8 223 28.3
Sopen11g001180 Solanum pennellii HOM05D003562 ORTHO05D004074 7.5e-17 92.0 172 33.1
PGSC0003DMG400006036 Solanum tuberosum HOM05D003562 ORTHO05D004074 7.5e-17 92.0 212 28.8
CSS0043492 Camellia sinensis var. sinensis HOM05D003562 ORTHO05D004074 9.9e-17 91.7 166 33.1
Peaxi162Scf00025g02824 Petunia axillaris HOM05D003562 ORTHO05D004074 9.9e-17 91.7 227 26.0
Pp3c12_13390 Physcomitrium patens HOM05D003562 ORTHO05D004074 9.9e-17 91.7 134 36.6
Actinidia37722 Actinidia chinensis HOM05D003721 ORTHO05D004074 1.7e-16 90.9 207 26.6
Pp3c25_14670 Physcomitrium patens HOM05D003562 ORTHO05D004074 1.7e-16 90.9 115 41.7
Solyc06g005930.3 Solanum lycopersicum HOM05D003562 ORTHO05D004074 1.7e-16 90.9 205 28.3
Dinv02658 Davidia involucrata HOM05D003562 ORTHO05D004074 2.2e-16 90.5 165 32.1
CDE01G0328 Ceratophyllum demersum HOM05D003562 ORTHO05D004074 2.9e-16 90.1 177 33.3
Solyc11g005180.1 Solanum lycopersicum HOM05D003562 ORTHO05D004074 2.9e-16 90.1 134 37.3
BolC2t11816H Brassica oleracea HOM05D003562 ORTHO05D004074 3.7e-16 89.7 133 32.3
SMO164G0021 Selaginella moellendorffii HOM05D003562 ORTHO05D004074 4.9e-16 89.4 170 34.1
SEGI_35747 Sequoiadendron giganteum HOM05D003562 ORTHO05D004074 4.9e-16 89.4 182 28.6
Ah.10g030580 Amaranthus hybridus HOM05D003562 ORTHO05D004074 1.4e-15 87.8 220 31.4
CDE12G0883 Ceratophyllum demersum HOM05D000824 ORTHO05D002221 1.4e-15 87.8 114 47.4
CAN.G557.9 Capsicum annuum HOM05D003562 ORTHO05D004074 1.9e-15 87.4 165 32.7
vmacro18374 Vaccinium macrocarpon HOM05D000884 ORTHO05D002127 2.4e-15 87.0 197 29.4
MBI18_g45417_MAGBIO Magnolia biondii HOM05D003562 ORTHO05D004074 4.1e-15 86.3 159 31.4
HanXRQChr06g0173441 Helianthus annuus HOM05D003562 ORTHO05D004074 7.1e-15 85.5 126 37.3
PGSC0003DMG400039163 Solanum tuberosum HOM05D003562 ORTHO05D004074 1.2e-14 84.7 165 33.3
Lsat_1_v5_gn_3_4941 Lactuca sativa HOM05D003562 ORTHO05D004074 1.6e-14 84.3 131 37.4
Peaxi162Scf00125g00231 Petunia axillaris HOM05D003562 ORTHO05D004074 4.6e-14 82.8 166 31.3
Solyc11g005240.1 Solanum lycopersicum HOM05D003562 ORTHO05D004074 6.0e-14 82.4 229 28.4
Nitab4.5_0004377g0040 Nicotiana tabacum HOM05D003562 ORTHO05D004074 7.8e-14 82.0 147 32.7
Sopen11g001250 Solanum pennellii HOM05D003562 ORTHO05D004074 7.8e-14 82.0 229 28.4
Solyc11g005230.1 Solanum lycopersicum HOM05D003562 ORTHO05D004074 1.0e-13 81.6 167 31.1
Sopen11g001240 Solanum pennellii HOM05D003562 ORTHO05D004074 1.0e-13 81.6 167 31.1
Lsat_1_v5_gn_4_44700 Lactuca sativa HOM05D003562 ORTHO05D004074 2.3e-13 80.5 128 37.5
QL06p011807 Quercus lobata HOM05D003562 ORTHO05D004074 3.0e-13 80.1 143 32.9
PGSC0003DMG400006063 Solanum tuberosum HOM05D003562 ORTHO05D004074 3.0e-13 80.1 165 32.1
PGSC0003DMG400042505 Solanum tuberosum HOM05D003562 ORTHO05D004074 3.9e-13 79.7 167 30.5
BraA02t08793Z Brassica rapa HOM05D003562 ORTHO05D004074 6.6e-13 79.0 131 32.1
Rhsim08G0039700 Rhododendron simsii HOM05D000884 ORTHO05D002127 6.6e-13 79.0 164 29.3
CAN.G557.10 Capsicum annuum HOM05D003562 ORTHO05D004074 1.1e-12 78.2 165 31.5
PRCOL_00000242 Prasinoderma coloniale HOM05D003562 ORTHO05D004074 1.5e-12 77.8 112 39.3
CARHR266600 Cardamine hirsuta HOM05D003562 ORTHO05D004074 2.5e-12 77.0 131 32.8
Nitab4.5_0002396g0050 Nicotiana tabacum HOM05D003562 ORTHO05D004074 2.5e-12 77.0 109 37.6
Thecc.07G145200 Theobroma cacao HOM05D003562 ORTHO05D004074 7.3e-12 75.5 155 31.0
Thecc.07G145100 Theobroma cacao HOM05D003562 ORTHO05D004074 1.6e-11 74.3 110 34.5
Zm00001eb188200 Zea mays HOM05D003562 ORTHO05D004074 3.6e-11 73.2 104 39.4
Os05g0118000 Oryza sativa ssp. japonica HOM05D003562 ORTHO05D004074 8.1e-11 72.0 107 39.3
CDE01G0684 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 1.4e-10 71.2 80 40.0
HPP92_020796 Vanilla planifolia HOM05D003562 ORTHO05D004074 1.4e-10 71.2 184 25.0
TAR636G1190 Trochodendron aralioides HOM05D003562 ORTHO05D004074 1.8e-10 70.9 172 30.2
AUR62026879 Chenopodium quinoa HOM05D003562 ORTHO05D004074 2.4e-10 70.5 110 39.1
PGSC0003DMG400009785 Solanum tuberosum HOM05D003562 ORTHO05D004074 2.4e-10 70.5 110 37.3
HPP92_020694 Vanilla planifolia HOM05D003562 ORTHO05D004074 1.5e-09 67.8 193 23.3
Nitab4.5_0002396g0020 Nicotiana tabacum HOM05D003562 ORTHO05D004074 3.4e-09 66.6 81 42.0
RcHm_v2.0_Chr7g0215511 Rosa chinensis HOM05D003562 ORTHO05D004074 2.1e-06 57.4 90 40.0


User provided reference genes

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