Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G3179 Cannabis sativa HOM05D004877 ORTHO05D005942 1.1e-187 659.8 331 100.0
QL05p020530 Quercus lobata HOM05D004877 ORTHO05D005942 1.4e-155 553.1 330 83.6
CiPaw.01G232800 Carya illinoinensis HOM05D004877 ORTHO05D005942 3.1e-150 535.4 332 80.7
MD09G1205800 Malus domestica HOM05D004877 ORTHO05D005942 4.0e-150 535.0 331 81.6
Prupe.3G061200 Prunus persica HOM05D004877 ORTHO05D005942 2.0e-149 532.7 331 79.5
MD17G1186700 Malus domestica HOM05D004877 ORTHO05D005942 1.4e-147 526.6 331 79.2
Thecc.06G097500 Theobroma cacao HOM05D004877 ORTHO05D005942 1.4e-147 526.6 330 79.1
Duzib235G0210 Durio zibethinus HOM05D004877 ORTHO05D005942 2.7e-146 522.3 330 78.2
Atru.chr1.3498 Acer truncatum HOM05D004877 ORTHO05D005942 8.6e-145 517.3 333 77.8
TWI18G0989 Tripterygium wilfordii HOM05D004877 ORTHO05D005942 1.1e-144 516.9 332 77.4
Gorai.003G063100 Gossypium raimondii HOM05D004877 ORTHO05D005942 1.5e-144 516.5 331 78.5
Ciclev10026016m.g Citrus clementina HOM05D004877 ORTHO05D005942 1.9e-144 516.2 339 78.8
Gohir.A02G118600 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.9e-144 516.2 331 78.5
RcHm_v2.0_Chr2g0140061 Rosa chinensis HOM05D004877 ORTHO05D005942 4.3e-144 515.0 333 78.4
FAN05G1125 Fragaria x ananassa HOM05D004877 ORTHO05D005942 7.3e-144 514.2 333 78.1
arahy.Tifrunner.gnm1.ann1.4Y1F7A Arachis hypogaea HOM05D004877 ORTHO05D005942 8.1e-143 510.8 333 77.5
FAN14G1716 Fragaria x ananassa HOM05D004877 ORTHO05D005942 8.1e-143 510.8 333 78.1
FvH4_6g32170 Fragaria vesca HOM05D004877 ORTHO05D005942 1.1e-142 510.4 333 78.1
Manes.04G132600 Manihot esculenta HOM05D004877 ORTHO05D005942 1.1e-142 510.4 333 76.9
CiPaw.02G146900 Carya illinoinensis HOM05D004877 ORTHO05D005942 1.4e-142 510.0 332 79.2
Eucgr.J02948 Eucalyptus grandis HOM05D004877 ORTHO05D005942 1.4e-142 510.0 331 75.8
Gohir.D03G059200 Gossypium hirsutum HOM05D004877 ORTHO05D005942 2.3e-142 509.2 332 77.7
GSVIVG01017013001 Vitis vinifera HOM05D004877 ORTHO05D005942 2.3e-142 509.2 331 78.2
Glyma.15G018900 Glycine max HOM05D004877 ORTHO05D005942 5.2e-142 508.1 333 77.8
FAN09G1375 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.2e-141 506.9 333 77.5
arahy.Tifrunner.gnm1.ann1.64XDM2 Arachis hypogaea HOM05D004877 ORTHO05D005942 1.5e-141 506.5 333 76.9
Glyma.13G355300 Glycine max HOM05D004877 ORTHO05D005942 2.6e-141 505.8 333 77.2
VMungo1080G0916 Vigna mungo HOM05D004877 ORTHO05D005942 4.4e-141 505.0 333 78.1
Lalb_Chr24g0396111 Lupinus albus HOM05D004877 ORTHO05D005942 5.8e-141 504.6 333 77.5
Duzib192G0168 Durio zibethinus HOM05D004877 ORTHO05D005942 1.7e-140 503.1 330 76.1
PGR102G2474 Punica granatum HOM05D004877 ORTHO05D005942 2.9e-140 502.3 336 76.8
Phvul.005G167000 Phaseolus vulgaris HOM05D004877 ORTHO05D005942 3.7e-140 501.9 333 78.4
Lj3g0003786 Lotus japonicus HOM05D004877 ORTHO05D005942 6.4e-140 501.1 333 76.9
FAN02G1875 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.4e-139 500.0 333 76.9
ClCG09G000060 Citrullus lanatus HOM05D004877 ORTHO05D005942 4.1e-139 498.4 334 75.4
Manes.11G035000 Manihot esculenta HOM05D004877 ORTHO05D005942 5.4e-139 498.0 333 76.0
Lalb_Chr14g0373091 Lupinus albus HOM05D004877 ORTHO05D005942 7.1e-139 497.7 333 76.3
Ca_01157_v3 Cicer arietinum L. HOM05D004877 ORTHO05D005942 1.2e-138 496.9 333 75.7
Gorai.011G072600 Gossypium raimondii HOM05D004877 ORTHO05D005942 6.0e-138 494.6 329 74.2
COL.COLO4_30486 Corchorus olitorius HOM05D004877 ORTHO05D005942 7.8e-138 494.2 331 77.3
CsaV3_7G035410 Cucumis sativus L. HOM05D004877 ORTHO05D005942 7.8e-138 494.2 334 75.1
TPR.G37257 Trifolium pratense HOM05D004877 ORTHO05D005942 1.3e-137 493.4 334 75.4
Psat5g297080 Pisum sativum HOM05D004877 ORTHO05D005942 5.1e-137 491.5 333 75.1
Gohir.D03G059150 Gossypium hirsutum HOM05D004877 ORTHO05D005942 6.6e-137 491.1 319 78.1
MELO3C024450.2 Cucumis melo HOM05D004877 ORTHO05D005942 8.6e-137 490.7 334 74.3
Dinv37993 Davidia involucrata HOM05D004877 ORTHO05D005942 2.5e-136 489.2 337 76.0
Medtr2g101270 Medicago truncatula HOM05D004877 ORTHO05D005942 3.3e-136 488.8 332 74.1
AUR62022182 Chenopodium quinoa HOM05D004877 ORTHO05D005942 5.6e-136 488.0 331 74.0
Ah.01g005680 Amaranthus hybridus HOM05D004877 ORTHO05D005942 7.3e-136 487.6 331 74.3
AUR62031885 Chenopodium quinoa HOM05D004877 ORTHO05D005942 9.6e-136 487.3 331 73.4
Hund06654 Selenicereus undatus HOM05D004877 ORTHO05D005942 6.2e-135 484.6 331 74.0
Sc10g0007170 Simmondsia chinensis HOM05D004877 ORTHO05D005942 1.4e-134 483.4 334 72.8
Gohir.A10G066900 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.8e-134 483.0 329 72.9
CSS0014120 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 3.1e-134 482.3 334 74.6
Sp3g14680 Schrenkiella parvula HOM05D004877 ORTHO05D005942 6.8e-134 481.1 334 72.2
Thhalv10021095m.g Eutrema salsugineum HOM05D004877 ORTHO05D005942 4.4e-133 478.4 336 71.7
Sc10g0007240 Simmondsia chinensis HOM05D004877 ORTHO05D005942 5.8e-133 478.0 334 72.2
THA.LOC104817965 Tarenaya hassleriana HOM05D004877 ORTHO05D005942 7.6e-133 477.6 334 71.9
Dinv30451 Davidia involucrata HOM05D004877 ORTHO05D005942 9.9e-133 477.2 338 74.3
Sed0013882 Sechium edule HOM05D004877 ORTHO05D005942 1.4e-131 473.4 331 72.8
SalBow1G2757 Salvia bowleyana HOM05D004877 ORTHO05D005942 1.9e-131 473.0 339 71.7
SalBow2G1418 Salvia bowleyana HOM05D004877 ORTHO05D005942 1.9e-131 473.0 339 71.7
TAR636G0039 Trochodendron aralioides HOM05D004877 ORTHO05D005942 4.2e-131 471.9 331 70.4
AT3G16310 Arabidopsis thaliana HOM05D004877 ORTHO05D005942 1.2e-130 470.3 334 71.9
Potri.001G188300 Populus trichocarpa HOM05D004877 ORTHO05D005942 2.7e-130 469.2 323 72.1
Actinidia32706 Actinidia chinensis HOM05D004877 ORTHO05D005942 7.8e-130 467.6 338 74.0
AL3G29060 Arabidopsis lyrata HOM05D004877 ORTHO05D005942 7.8e-130 467.6 334 71.6
Cc04_g02700 Coffea canephora HOM05D004877 ORTHO05D005942 7.8e-130 467.6 339 71.4
Gohir.D10G068000 Gossypium hirsutum HOM05D004877 ORTHO05D005942 5.1e-129 464.9 329 71.4
Carub.0003s1606 Capsella rubella HOM05D004877 ORTHO05D005942 2.5e-128 462.6 335 70.7
TAR624G0319 Trochodendron aralioides HOM05D004877 ORTHO05D005942 4.3e-128 461.8 331 71.3
EL10Ac9g22101 Beta vulgaris HOM05D004877 ORTHO05D005942 5.6e-128 461.5 377 63.9
BcaC05g28894 Brassica carinata HOM05D004877 ORTHO05D005942 3.6e-127 458.8 334 70.1
Sabra01G0152700 Salix brachista HOM05D004877 ORTHO05D005942 6.2e-127 458.0 333 68.8
BraA05t22146Z Brassica rapa HOM05D004877 ORTHO05D005942 1.4e-126 456.8 331 69.8
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 9.0e-126 454.1 330 69.7
Lj9A511G47 Lonicera japonica HOM05D004877 ORTHO05D005942 1.2e-125 453.8 342 72.2
Hund00671 Selenicereus undatus HOM05D004877 ORTHO05D005942 1.2e-125 453.8 333 69.4
CARHR091520 Cardamine hirsuta HOM05D004877 ORTHO05D005942 2.0e-125 453.0 324 71.6
Nitab4.5_0003167g0040 Nicotiana tabacum HOM05D004877 ORTHO05D005942 2.9e-124 449.1 338 70.4
Peaxi162Scf00038g00844 Petunia axillaris HOM05D004877 ORTHO05D005942 4.9e-124 448.4 341 69.5
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 8.4e-124 447.6 328 69.2
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 8.4e-124 447.6 328 69.2
Nitab4.5_0001755g0090 Nicotiana tabacum HOM05D004877 ORTHO05D005942 1.1e-123 447.2 338 70.1
arahy.Tifrunner.gnm1.ann1.NE95XN Arachis hypogaea HOM05D004877 ORTHO05D005942 3.2e-123 445.7 354 66.1
arahy.Tifrunner.gnm1.ann1.WG6QSW Arachis hypogaea HOM05D004877 ORTHO05D005942 3.2e-123 445.7 354 66.1
PGSC0003DMG400002534 Solanum tuberosum HOM05D004877 ORTHO05D005942 3.2e-123 445.7 338 68.6
Sopen03g039700 Solanum pennellii HOM05D004877 ORTHO05D005942 5.4e-123 444.9 338 68.9
CAN.G438.5 Capsicum annuum HOM05D004877 ORTHO05D005942 1.2e-122 443.7 339 68.1
MBI01_g42890_MAGBIO Magnolia biondii HOM05D004877 ORTHO05D005942 2.1e-122 443.0 337 67.7
Nn8g39120 Nelumbo nucifera HOM05D004877 ORTHO05D005942 2.7e-122 442.6 353 65.4
Solyc03g120880.4 Solanum lycopersicum HOM05D004877 ORTHO05D005942 1.0e-121 440.7 338 68.3
BcaB06g25724 Brassica carinata HOM05D004877 ORTHO05D005942 6.6e-121 438.0 337 68.5
CSS0036359 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 1.5e-120 436.8 340 69.7
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 7.4e-120 434.5 338 66.9
Oeu001891.1 Olea europaea HOM05D004877 ORTHO05D005942 1.6e-119 433.3 334 66.8
Rhsim08G0226300 Rhododendron simsii HOM05D004877 ORTHO05D005942 8.1e-119 431.0 347 68.6
MSTRG.22647 Avicennia marina HOM05D004877 ORTHO05D005942 3.8e-116 422.2 339 64.9
DCAR_016196 Daucus carota HOM05D004877 ORTHO05D005942 1.1e-115 420.6 340 66.8
Aqoxy7G01469 Aquilegia oxysepala HOM05D004877 ORTHO05D005942 3.2e-115 419.1 333 65.8
Sed0014944 Sechium edule HOM05D004877 ORTHO05D005942 1.1e-112 410.6 332 65.7
MSTRG.11036 Avicennia marina HOM05D004877 ORTHO05D005942 4.3e-112 408.7 339 65.2
Cpa.g.c40702 Carica papaya HOM05D004877 ORTHO05D005942 2.8e-111 406.0 262 79.0
Lsat_1_v5_gn_4_99980 Lactuca sativa HOM05D004877 ORTHO05D005942 3.7e-111 405.6 357 61.9
CDE05G3078 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 6.9e-110 401.4 335 63.0
Lj9A524G48 Lonicera japonica HOM05D004877 ORTHO05D005942 8.4e-108 394.4 357 63.9
PSO173G0077 Papaver somniferum HOM05D004877 ORTHO05D005942 7.1e-107 391.3 352 60.5
PSO832G2273 Papaver somniferum HOM05D004877 ORTHO05D005942 1.6e-106 390.2 352 60.2
CDE05G1429 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 4.1e-102 375.6 333 59.5
unitig_46.g18560 Utricularia gibba HOM05D004877 ORTHO05D005942 2.2e-100 369.8 341 58.4
Haze_15830 Corylus avellana HOM05D002410 ORTHO05D002805 1.9e-99 366.7 323 64.7
ATR0705G205 Amborella trichopoda HOM05D004877 ORTHO05D005942 2.5e-99 366.3 342 58.8
HanXRQChr09g0275881 Helianthus annuus HOM05D004877 ORTHO05D005942 4.2e-99 365.5 360 57.5
vmacro18867 Vaccinium macrocarpon HOM05D004877 ORTHO05D005942 1.6e-98 363.6 282 67.4
unitig_37.g12259 Utricularia gibba HOM05D004877 ORTHO05D005942 3.3e-96 355.9 327 58.1
ECA232G1650 Erigeron canadensis HOM05D004877 ORTHO05D005942 4.6e-90 335.5 327 56.9
TAR624G1397 Trochodendron aralioides HOM05D004877 ORTHO05D005942 7.4e-88 328.2 228 73.2
Haze_15829 Corylus avellana HOM05D004877 ORTHO05D005942 9.7e-80 301.2 257 63.8
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 1.0e-76 291.2 245 63.7
Peaxi162Scf00894g00009 Petunia axillaris HOM05D004877 ORTHO05D005942 2.5e-75 286.6 209 69.4
HanXRQChr16g0501211 Helianthus annuus HOM05D004877 ORTHO05D005942 2.6e-72 276.6 368 45.7
arahy.Tifrunner.gnm1.ann1.XV48AZ Arachis hypogaea HOM05D004877 ORTHO05D005942 1.1e-70 271.2 188 72.3
Migut.I00909 Erythranthe guttata HOM05D004877 ORTHO05D005942 1.0e-65 254.6 267 56.6
Peaxi162Scf11517g00001 Petunia axillaris HOM05D004877 ORTHO05D005942 2.6e-64 250.0 187 68.4
SEGI_39894 Sequoiadendron giganteum HOM05D004877 ORTHO05D005942 3.1e-62 243.0 380 42.4
Pp3c6_16260 Physcomitrium patens HOM05D004877 ORTHO05D005942 1.1e-59 234.6 347 43.8
Pp3c5_15240 Physcomitrium patens HOM05D004877 ORTHO05D005942 3.2e-59 233.0 356 44.1
Mapoly0014s0033 Marchantia polymorpha HOM05D004877 ORTHO05D005942 9.8e-56 221.5 353 41.9
Os01g0200500 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 1.7e-52 210.7 215 53.5
Zm00001eb337990 Zea mays HOM05D004877 ORTHO05D005942 1.5e-51 207.6 345 41.4
HPP92_002859 Vanilla planifolia HOM05D004877 ORTHO05D005942 5.2e-49 199.1 225 52.4
SMO144G0168 Selaginella moellendorffii HOM05D004877 ORTHO05D005942 3.2e-46 189.9 175 53.7
Zm00001eb293750 Zea mays HOM05D004877 ORTHO05D005942 1.0e-44 184.9 365 36.4
Os05g0520100 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 1.3e-39 167.9 376 35.1
AagrBONN_evm.TU.Sc2ySwM_117.2493 Anthoceros agrestis HOM05D004877 ORTHO05D005942 4.0e-33 146.4 337 37.1
Nn2g11613 Nelumbo nucifera HOM05D004877 ORTHO05D005942 3.5e-29 133.3 104 65.4
Zm00001eb353450 Zea mays HOM05D004877 ORTHO05D005942 1.2e-26 124.8 355 32.1
CBR_g44943 Chara braunii HOM05D004877 ORTHO05D005942 4.7e-26 122.9 147 48.3
PSO675G8939 Papaver somniferum HOM05D004877 ORTHO05D005942 8.1e-26 122.1 128 50.0
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 4.0e-25 119.8 92 62.0
SEGI_33810 Sequoiadendron giganteum HOM05D004877 ORTHO05D000002 7.6e-24 115.5 125 50.4
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 1.3e-23 114.8 92 59.8
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 1.7e-23 114.4 106 52.8
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 2.9e-23 113.6 88 62.5
MD16G1217600 Malus domestica HOM05D004877 ORTHO05D005942 3.9e-20 103.2 73 65.8
Nn5g29960 Nelumbo nucifera HOM05D004877 ORTHO05D005942 1.1e-19 101.7 101 58.4
MD07G1258000 Malus domestica HOM05D004877 ORTHO05D005942 1.2e-18 98.2 55 81.8
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 1.8e-17 94.4 80 58.8
Cre12.g553050 Chlamydomonas reinhardtii HOM05D004877 ORTHO05D005942 4.0e-17 93.2 149 34.2
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 8.9e-17 92.0 63 69.8
Cpa.g.c43067 Carica papaya HOM05D004877 ORTHO05D005942 4.6e-13 79.7 41 90.2
PRCOL_00002288 Prasinoderma coloniale HOM05D004877 ORTHO05D005942 1.3e-12 78.2 334 26.6
Pp3c1_40780 Physcomitrium patens HOM05D004877 ORTHO05D005942 4.3e-11 73.2 177 32.2
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 1.5e-08 64.7 42 69.0
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 9.9e-08 62.0 53 50.9


User provided reference genes

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