Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G962.6 Capsicum annuum HOM05D006016 ORTHO05D007553 2.0e-167 592.4 314 100.0
PGSC0003DMG400000944 Solanum tuberosum HOM05D006016 ORTHO05D007553 1.7e-137 493.0 312 86.5
Solyc09g064790.3 Solanum lycopersicum HOM05D006016 ORTHO05D007553 2.4e-136 489.2 312 86.2
Sopen09g026490 Solanum pennellii HOM05D006016 ORTHO05D007553 2.6e-135 485.7 312 85.9
Nitab4.5_0007392g0030 Nicotiana tabacum HOM05D006016 ORTHO05D007553 6.1e-132 474.6 315 81.0
Nitab4.5_0006180g0080 Nicotiana tabacum HOM05D006016 ORTHO05D007553 3.0e-131 472.2 315 81.9
Peaxi162Scf00104g00220 Petunia axillaris HOM05D006016 ORTHO05D007553 9.1e-120 434.1 313 75.7
Oeu011169.1 Olea europaea HOM05D006016 ORTHO05D007553 3.2e-117 425.6 297 75.4
MSTRG.18215 Avicennia marina HOM05D006016 ORTHO05D007553 9.8e-114 414.1 274 81.0
SGA_v2.0_scaffold1G00448 Striga asiatica HOM05D006016 ORTHO05D007553 3.7e-113 412.1 276 78.3
GSVIVG01011095001 Vitis vinifera HOM05D006016 ORTHO05D007553 9.1e-112 407.5 275 80.7
Hma1.2p1_0628F.1_g191900 Hydrangea macrophylla HOM05D006016 ORTHO05D007553 1.2e-111 407.1 263 81.4
Migut.D00263 Erythranthe guttata HOM05D006016 ORTHO05D007553 2.2e-110 402.9 274 76.3
Cc02_g34480 Coffea canephora HOM05D006016 ORTHO05D007553 8.5e-110 401.0 321 72.3
CSS0041846 Camellia sinensis var. sinensis HOM05D006016 ORTHO05D007553 2.1e-108 396.4 301 72.8
DCAR_002754 Daucus carota HOM05D006016 ORTHO05D007553 2.7e-108 396.0 303 72.6
Haze_04746 Corylus avellana HOM05D006016 ORTHO05D007553 6.1e-108 394.8 275 77.1
Nn1g02145 Nelumbo nucifera HOM05D006016 ORTHO05D007553 1.8e-107 393.3 316 70.9
Aqoxy2G03243 Aquilegia oxysepala HOM05D006016 ORTHO05D007553 2.3e-107 392.9 288 70.8
Cfa006104 Carpinus fangiana HOM05D006016 ORTHO05D007553 1.5e-106 390.2 275 76.7
Duzib138G0992 Durio zibethinus HOM05D006016 ORTHO05D007553 3.4e-106 389.0 264 78.0
PGR044G1280 Punica granatum HOM05D006016 ORTHO05D007553 5.7e-106 388.3 264 77.7
MD11G1289700 Malus domestica HOM05D006016 ORTHO05D007553 7.5e-106 387.9 313 69.3
Eucgr.K03395 Eucalyptus grandis HOM05D006016 ORTHO05D007553 3.7e-105 385.6 271 76.4
Eucgr.K03393 Eucalyptus grandis HOM05D006016 ORTHO05D007553 4.9e-105 385.2 271 76.8
MD03G1268900 Malus domestica HOM05D006016 ORTHO05D007553 6.3e-105 384.8 313 69.0
Thecc.01G283800 Theobroma cacao HOM05D006016 ORTHO05D007553 8.3e-105 384.4 295 72.9
CANSAT80G0718 Cannabis sativa HOM05D006016 ORTHO05D007553 1.4e-104 383.6 263 77.6
Prupe.8G244900 Prunus persica HOM05D006016 ORTHO05D007553 1.4e-104 383.6 264 76.5
QL12p022630 Quercus lobata HOM05D006016 ORTHO05D007553 1.4e-104 383.6 272 76.8
Potri.014G138500 Populus trichocarpa HOM05D006016 ORTHO05D007553 4.1e-104 382.1 263 73.4
Gohir.A08G069800 Gossypium hirsutum HOM05D006016 ORTHO05D007553 2.0e-103 379.8 271 73.8
CiPaw.07G094500 Carya illinoinensis HOM05D006016 ORTHO05D007553 2.7e-103 379.4 278 74.8
Manes.01G210000 Manihot esculenta HOM05D006016 ORTHO05D007553 2.7e-103 379.4 264 76.1
Sc05g0005010 Simmondsia chinensis HOM05D006016 ORTHO05D007553 4.5e-103 378.6 273 72.5
ClCG07G000070 Citrullus lanatus HOM05D006016 ORTHO05D007553 1.0e-102 377.5 300 71.0
Gorai.004G083400 Gossypium raimondii HOM05D006016 ORTHO05D007553 1.3e-102 377.1 276 73.6
Sed0013000 Sechium edule HOM05D006016 ORTHO05D007553 1.7e-102 376.7 317 69.7
CARHR124900 Cardamine hirsuta HOM05D006016 ORTHO05D007553 2.3e-102 376.3 315 66.3
RcHm_v2.0_Chr1g0321311 Rosa chinensis HOM05D006016 ORTHO05D007553 6.6e-102 374.8 264 75.8
MELO3C014346.2 Cucumis melo HOM05D006016 ORTHO05D007553 8.6e-102 374.4 307 70.4
SalBow4G2498 Salvia bowleyana HOM05D006016 ORTHO05D007553 8.6e-102 374.4 286 69.2
Hund06953 Selenicereus undatus HOM05D006016 ORTHO05D007553 1.1e-101 374.0 292 70.9
Glyma.10G024400 Glycine max HOM05D006016 ORTHO05D007553 1.9e-101 373.2 300 67.3
TAR633G0970 Trochodendron aralioides HOM05D006016 ORTHO05D007553 1.9e-101 373.2 248 81.0
AUR62004906 Chenopodium quinoa HOM05D006016 ORTHO05D007553 3.3e-101 372.5 279 68.5
COL.COLO4_09142 Corchorus olitorius HOM05D006016 ORTHO05D007553 4.3e-101 372.1 314 67.2
Cpa.g.sc485.5 Carica papaya HOM05D006016 ORTHO05D007553 2.1e-100 369.8 248 79.8
Carub.0004s3083 Capsella rubella HOM05D006016 ORTHO05D007553 2.8e-100 369.4 278 71.6
Ciclev10020923m.g Citrus clementina HOM05D006016 ORTHO05D007553 3.6e-100 369.0 284 71.8
EL10Ac4g09090 Beta vulgaris HOM05D006016 ORTHO05D007553 8.0e-100 367.9 280 67.5
FAN03G2867 Fragaria x ananassa HOM05D006016 ORTHO05D007553 8.0e-100 367.9 324 65.4
FvH4_7g02610 Fragaria vesca HOM05D006016 ORTHO05D007553 1.8e-99 366.7 264 75.0
PSO170G1401 Papaver somniferum HOM05D006016 ORTHO05D007553 3.0e-99 365.9 270 68.9
PSO407G0301 Papaver somniferum HOM05D006016 ORTHO05D007553 4.0e-99 365.5 270 68.9
Atru.chr5.1361 Acer truncatum HOM05D006016 ORTHO05D007553 6.8e-99 364.8 300 70.0
HanXRQChr01g0002401 Helianthus annuus HOM05D006016 ORTHO05D007553 1.5e-98 363.6 298 64.8
BcaB02g08738 Brassica carinata HOM05D006016 ORTHO05D007553 4.4e-98 362.1 275 72.0
Ca_09774_v3 Cicer arietinum L. HOM05D006016 ORTHO05D007553 9.8e-98 360.9 314 66.9
THA.LOC104823056 Tarenaya hassleriana HOM05D006016 ORTHO05D007553 2.2e-97 359.8 316 65.5
TPR.G1544 Trifolium pratense HOM05D000563 ORTHO05D000536 8.3e-97 357.8 303 69.0
unitig_61.g26325 Utricularia gibba HOM05D006016 ORTHO05D007553 1.1e-96 357.5 304 64.1
AUR62032753 Chenopodium quinoa HOM05D006016 ORTHO05D007553 1.8e-96 356.7 248 72.2
BraA05t18997Z Brassica rapa HOM05D006016 ORTHO05D007553 2.4e-96 356.3 277 71.5
Thhalv10001558m.g Eutrema salsugineum HOM05D006016 ORTHO05D007553 3.2e-96 355.9 314 65.3
Medtr1g072640 Medicago truncatula HOM05D006016 ORTHO05D007553 3.2e-96 355.9 314 65.3
Lsat_1_v5_gn_5_187441 Lactuca sativa HOM05D006016 ORTHO05D007553 4.1e-96 355.5 298 65.4
Sp4g30040 Schrenkiella parvula HOM05D006016 ORTHO05D007553 4.1e-96 355.5 317 64.4
FAN01G1545 Fragaria x ananassa HOM05D006016 ORTHO05D007553 5.4e-96 355.1 264 72.7
arahy.Tifrunner.gnm1.ann1.NXI6YJ Arachis hypogaea HOM05D006016 ORTHO05D007553 1.6e-95 353.6 266 70.3
Lalb_Chr21g0306561 Lupinus albus HOM05D006016 ORTHO05D007553 2.0e-95 353.2 275 70.9
Phvul.007G169400 Phaseolus vulgaris HOM05D006016 ORTHO05D007553 2.7e-95 352.8 303 68.0
arahy.Tifrunner.gnm1.ann1.Q6PPUG Arachis hypogaea HOM05D006016 ORTHO05D007553 3.5e-95 352.4 266 69.2
Aa31LG4G3290 Aethionema arabicum HOM05D006016 ORTHO05D007553 4.6e-95 352.1 312 63.1
AL4G47720 Arabidopsis lyrata HOM05D006016 ORTHO05D007553 7.8e-95 351.3 326 62.9
CDE01G0302 Ceratophyllum demersum HOM05D006016 ORTHO05D007553 1.5e-93 347.1 263 68.8
A05p00010 Brassica napus HOM05D006016 ORTHO05D007553 3.3e-93 345.9 270 71.5
ECA248G0902 Erigeron canadensis HOM05D006016 ORTHO05D007553 5.6e-93 345.1 285 65.6
CsaV3_6G036870 Cucumis sativus L. HOM05D006016 ORTHO05D007553 7.3e-93 344.7 290 67.6
ATR0626G088 Amborella trichopoda HOM05D006016 ORTHO05D007553 9.5e-93 344.4 320 60.6
BolC4t21679H Brassica oleracea HOM05D006016 ORTHO05D007553 2.1e-92 343.2 314 64.0
BolSC55t61226H Brassica oleracea HOM05D006016 ORTHO05D007553 6.2e-92 341.7 314 63.7
Rhsim01G0276200 Rhododendron simsii HOM05D006016 ORTHO05D007553 1.0e-91 340.9 375 52.8
Lj2C1178T3 Lonicera japonica HOM05D006016 ORTHO05D007553 1.5e-90 337.0 224 76.8
arahy.Tifrunner.gnm1.ann1.95RMVD Arachis hypogaea HOM05D006016 ORTHO05D007553 2.2e-89 333.2 253 68.4
HPP92_025128 Vanilla planifolia HOM05D006016 ORTHO05D007553 2.9e-89 332.8 264 65.9
TWI14G0073 Tripterygium wilfordii HOM05D006016 ORTHO05D007553 6.4e-89 331.6 271 66.8
Lj5g0023557 Lotus japonicus HOM05D006016 ORTHO05D007553 1.1e-88 330.9 283 68.2
Os05g0393400 Oryza sativa ssp. japonica HOM05D006016 ORTHO05D007553 3.5e-87 325.9 263 62.0
BcaC02g12797 Brassica carinata HOM05D006016 ORTHO05D007553 1.3e-86 323.9 295 64.7
Sabra14G0104500 Salix brachista HOM05D006016 ORTHO05D007553 2.3e-86 323.2 283 61.1
BolSC55t61222H Brassica oleracea HOM05D006016 ORTHO05D007553 6.6e-86 321.6 269 66.2
AT2G48120 Arabidopsis thaliana HOM05D006016 ORTHO05D007553 1.5e-85 320.5 317 59.6
BNapus_Darmor_BZH_scaffold_188p00120 Brassica napus HOM05D006016 ORTHO05D007553 5.6e-85 318.5 225 72.9
BNapus_Darmor_BZH_scaffold_188p00130 Brassica napus HOM05D006016 ORTHO05D007553 5.6e-85 318.5 225 72.9
Zm00001eb287380 Zea mays HOM05D006016 ORTHO05D007553 8.1e-84 314.7 248 64.9
Psat6g138080 Pisum sativum HOM05D006016 ORTHO05D007553 7.5e-82 308.1 227 72.7
Gohir.D08G079100 Gossypium hirsutum HOM05D006016 ORTHO05D007553 2.9e-81 306.2 271 64.2
Dinv32962 Davidia involucrata HOM05D006016 ORTHO05D007553 1.2e-79 300.8 184 82.1
Hma1.2p1_0628F.1_g191890 Hydrangea macrophylla HOM05D006016 ORTHO05D007553 1.2e-79 300.8 186 84.4
BcaC02g12566 Brassica carinata HOM05D006016 ORTHO05D007553 8.1e-76 288.1 296 60.1
vmacro14936 Vaccinium macrocarpon HOM05D006016 ORTHO05D007553 3.0e-70 269.6 302 54.3
arahy.Tifrunner.gnm1.ann1.9IJ3BZ Arachis hypogaea HOM05D006016 ORTHO05D007553 6.2e-68 261.9 287 53.7
SEGI_37912 Sequoiadendron giganteum HOM05D006016 ORTHO05D007553 1.4e-67 260.8 272 54.0
QL10p008835 Quercus lobata HOM05D006016 ORTHO05D007553 2.4e-67 260.0 187 76.5
BolSC55t61219H Brassica oleracea HOM05D006016 ORTHO05D007553 1.4e-64 250.8 204 70.1
Actinidia21099 Actinidia chinensis HOM05D006016 ORTHO05D007553 5.6e-61 238.8 260 55.4
BolSC55t61223H Brassica oleracea HOM05D006016 ORTHO05D007553 1.6e-60 237.3 184 72.8
SMO360G0019 Selaginella moellendorffii HOM05D006016 ORTHO05D007553 1.1e-59 234.6 252 51.6
Mapoly0059s0024 Marchantia polymorpha HOM05D006016 ORTHO05D007553 1.1e-51 208.0 252 47.6
Pp3c5_15510 Physcomitrium patens HOM05D006016 ORTHO05D007553 1.8e-51 207.2 303 45.9
Lj9C654T2 Lonicera japonica HOM05D006016 ORTHO05D007553 7.6e-50 201.8 192 57.8
Glyma.02G149402 Glycine max HOM05D006016 ORTHO05D007553 4.3e-45 186.0 153 68.0
AagrBONN_evm.TU.Sc2ySwM_228.5509 Anthoceros agrestis HOM05D006016 ORTHO05D007553 3.4e-42 176.4 172 52.3
BraA05t18995Z Brassica rapa HOM05D006016 ORTHO05D007553 1.5e-37 161.0 128 64.1
BNapus_Darmor_BZH_scaffold_188p00100 Brassica napus HOM05D006016 ORTHO05D007553 1.6e-36 157.5 127 63.8
Oeu001432.1 Olea europaea HOM05D006016 ORTHO05D007553 4.6e-31 139.4 98 68.4
BNapus_Darmor_BZH_scaffold_188p00090 Brassica napus HOM05D001484 ORTHO05D007553 5.1e-30 136.0 110 73.6
Actinidia24878 Actinidia chinensis HOM05D006016 ORTHO05D007553 6.7e-30 135.6 182 50.5
CBR_g23747 Chara braunii HOM05D006016 ORTHO05D007553 1.0e-25 121.7 218 38.5
QL09p051040 Quercus lobata HOM05D006016 ORTHO05D007553 2.5e-24 117.1 120 55.8
AUR62004907 Chenopodium quinoa HOM05D006016 ORTHO05D007553 8.8e-22 108.6 76 72.4
QL09p050526 Quercus lobata HOM05D006016 ORTHO05D337571 8.5e-17 92.0 101 53.5
BcaC08g43234 Brassica carinata HOM05D006016 ORTHO05D007553 1.2e-15 88.2 69 59.4
MBI04_g32261_MAGBIO Magnolia biondii HOM05D006016 ORTHO05D007553 3.9e-14 83.2 72 63.9
Dinv13370 Davidia involucrata HOM05D006016 ORTHO05D007553 2.6e-13 80.5 107 46.7
Dinv01676 Davidia involucrata HOM05D006016 ORTHO05D007553 3.2e-08 63.5 65 55.4
Dinv16891 Davidia involucrata HOM05D006016 ORTHO05D007553 7.2e-08 62.4 65 56.9
QL09p050966 Quercus lobata HOM05D001484 ORTHO05D001564 2.1e-07 60.8 35 68.6
Medtr1g072620 Medicago truncatula HOM05D006016 ORTHO05D007553 4.7e-07 59.7 53 62.3
BolC6t35694H Brassica oleracea HOM05D006016 ORTHO05D007553 3.0e-06 57.0 46 69.6
Lj9C654T3 Lonicera japonica HOM05D006016 ORTHO05D007553 8.8e-06 55.5 35 80.0


User provided reference genes

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