Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G959.48 Capsicum annuum HOM05D000006 ORTHO05D004030 3.1e-68 261.5 121 100.0
Atru.chr13.1315 Acer truncatum HOM05D000006 ORTHO05D004030 8.2e-61 236.9 120 92.5
Atru.chr13.1359 Acer truncatum HOM05D000006 ORTHO05D004030 8.2e-61 236.9 120 92.5
arahy.Tifrunner.gnm1.ann1.6W1W5K Arachis hypogaea HOM05D000006 ORTHO05D004030 8.2e-61 236.9 120 92.5
arahy.Tifrunner.gnm1.ann1.B54JNT Arachis hypogaea HOM05D000006 ORTHO05D004030 8.2e-61 236.9 120 92.5
CSS0012091 Camellia sinensis var. sinensis HOM05D000006 ORTHO05D004030 8.2e-61 236.9 120 92.5
CANSAT56G0745 Cannabis sativa HOM05D000006 ORTHO05D004030 8.2e-61 236.9 120 92.5
Cpa.g.sc42.141 Carica papaya HOM05D000006 ORTHO05D004030 8.2e-61 236.9 120 92.5
Ca_14036_v3 Cicer arietinum L. HOM05D000006 ORTHO05D004030 8.2e-61 236.9 120 92.5
Ciclev10001133m.g Citrus clementina HOM05D000006 ORTHO05D004030 8.2e-61 236.9 120 92.5
COL.COLO4_21821 Corchorus olitorius HOM05D000006 ORTHO05D004030 8.2e-61 236.9 120 92.5
Dinv26721 Davidia involucrata HOM05D000006 ORTHO05D004030 8.2e-61 236.9 120 92.5
Duzib093G0061 Durio zibethinus HOM05D000006 ORTHO05D004030 8.2e-61 236.9 120 92.5
Eucgr.F04379 Eucalyptus grandis HOM05D000006 ORTHO05D004030 8.2e-61 236.9 120 92.5
Glyma.04G130300 Glycine max HOM05D000006 ORTHO05D004030 8.2e-61 236.9 120 92.5
Glyma.06G316400 Glycine max HOM05D000006 ORTHO05D004030 8.2e-61 236.9 120 92.5
Gohir.A05G231900 Gossypium hirsutum HOM05D000006 ORTHO05D004030 8.2e-61 236.9 120 92.5
Gohir.D05G234200 Gossypium hirsutum HOM05D000006 ORTHO05D004030 8.2e-61 236.9 120 92.5
Gohir.D06G041700 Gossypium hirsutum HOM05D000006 ORTHO05D004030 8.2e-61 236.9 120 92.5
Gorai.009G242400 Gossypium raimondii HOM05D000006 ORTHO05D004030 8.2e-61 236.9 120 92.5
Gorai.010G046900 Gossypium raimondii HOM05D000006 ORTHO05D004030 8.2e-61 236.9 120 92.5
Lsat_1_v5_gn_1_12240 Lactuca sativa HOM05D000006 ORTHO05D004030 8.2e-61 236.9 120 92.5
Lj4A550G32 Lonicera japonica HOM05D000006 ORTHO05D004030 8.2e-61 236.9 120 92.5
Lj4A578G72 Lonicera japonica HOM05D000006 ORTHO05D004030 8.2e-61 236.9 120 92.5
Lj3g0019564 Lotus japonicus HOM05D000006 ORTHO05D004030 8.2e-61 236.9 120 92.5
Nitab4.5_0000051g0130 Nicotiana tabacum HOM05D000006 ORTHO05D004030 8.2e-61 236.9 120 92.5
Nitab4.5_0002496g0060 Nicotiana tabacum HOM05D000006 ORTHO05D004030 8.2e-61 236.9 120 92.5
Oeu001989.1 Olea europaea HOM05D000006 ORTHO05D004030 8.2e-61 236.9 120 92.5
Os07g0626600 Oryza sativa ssp. japonica HOM05D000006 ORTHO05D004030 8.2e-61 236.9 120 92.5
Phvul.005G010700 Phaseolus vulgaris HOM05D000006 ORTHO05D004030 8.2e-61 236.9 120 92.5
Phvul.005G011500 Phaseolus vulgaris HOM05D000006 ORTHO05D004030 8.2e-61 236.9 120 92.5
Hund16820 Selenicereus undatus HOM05D000006 ORTHO05D004030 8.2e-61 236.9 120 92.5
Sc23g0000920 Simmondsia chinensis HOM05D000006 ORTHO05D004030 8.2e-61 236.9 120 92.5
Solyc11g013520.3 Solanum lycopersicum HOM05D000006 ORTHO05D004030 8.2e-61 236.9 120 92.5
Sopen11g008540 Solanum pennellii HOM05D000006 ORTHO05D004030 8.2e-61 236.9 120 92.5
Thecc.08G116400 Theobroma cacao HOM05D000006 ORTHO05D004030 8.2e-61 236.9 120 92.5
TAR625G0616 Trochodendron aralioides HOM05D000006 ORTHO05D004030 8.2e-61 236.9 120 92.5
VMungo1080G1349 Vigna mungo HOM05D000006 ORTHO05D004030 8.2e-61 236.9 120 92.5
GSVIVG01008945001 Vitis vinifera HOM05D000006 ORTHO05D004030 8.2e-61 236.9 120 92.5
Zm00001eb328000 Zea mays HOM05D000006 ORTHO05D004030 8.2e-61 236.9 120 92.5
Actinidia03495 Actinidia chinensis HOM05D000006 ORTHO05D004030 1.1e-60 236.5 120 91.7
Dinv27386 Davidia involucrata HOM05D000006 ORTHO05D004030 1.1e-60 236.5 120 91.7
Lalb_Chr18g0049021 Lupinus albus HOM05D000006 ORTHO05D004030 1.1e-60 236.5 120 91.7
MD08G1173300 Malus domestica HOM05D000006 ORTHO05D004030 1.1e-60 236.5 120 91.7
MD15G1358600 Malus domestica HOM05D000006 ORTHO05D004030 1.1e-60 236.5 120 91.7
Potri.005G171700 Populus trichocarpa HOM05D000006 ORTHO05D004030 1.1e-60 236.5 120 91.7
Prupe.1G506200 Prunus persica HOM05D000006 ORTHO05D004030 1.1e-60 236.5 120 91.7
PGR142G3648 Punica granatum HOM05D000006 ORTHO05D004030 1.1e-60 236.5 120 91.7
Sabra05G0129200 Salix brachista HOM05D000006 ORTHO05D004030 1.1e-60 236.5 120 91.7
Sc01g0001570 Simmondsia chinensis HOM05D000006 ORTHO05D004030 1.1e-60 236.5 120 91.7
Potri.002G089500 Populus trichocarpa HOM05D000006 ORTHO05D004030 1.4e-60 236.1 120 90.8
MSTRG.22428 Avicennia marina HOM05D000006 ORTHO05D004030 1.8e-60 235.7 120 91.7
MSTRG.24147 Avicennia marina HOM05D000006 ORTHO05D004030 1.8e-60 235.7 120 91.7
Migut.N03322 Erythranthe guttata HOM05D000006 ORTHO05D004030 1.8e-60 235.7 120 91.7
HanXRQChr02g0044231 Helianthus annuus HOM05D000006 ORTHO05D004030 1.8e-60 235.7 120 91.7
SalBow6G6076 Salvia bowleyana HOM05D000006 ORTHO05D004030 1.8e-60 235.7 120 91.7
unitig_21.g20189 Utricularia gibba HOM05D000006 ORTHO05D004030 1.8e-60 235.7 120 91.7
Actinidia23042 Actinidia chinensis HOM05D000006 ORTHO05D004030 2.4e-60 235.3 120 91.7
Aqoxy5G01525 Aquilegia oxysepala HOM05D000006 ORTHO05D004030 2.4e-60 235.3 120 91.7
Gohir.A06G040700 Gossypium hirsutum HOM05D000006 ORTHO05D004030 2.4e-60 235.3 120 91.7
Medtr3g007710 Medicago truncatula HOM05D000006 ORTHO05D004030 2.4e-60 235.3 120 91.7
PSO210G6583 Papaver somniferum HOM05D000006 ORTHO05D004030 2.4e-60 235.3 120 91.7
PSO447G0296 Papaver somniferum HOM05D000006 ORTHO05D004030 2.4e-60 235.3 120 91.7
Psat5g230080 Pisum sativum HOM05D000006 ORTHO05D004030 2.4e-60 235.3 120 91.7
TPR.G12257 Trifolium pratense HOM05D000006 ORTHO05D004030 2.4e-60 235.3 120 91.7
TAR381G0924 Trochodendron aralioides HOM05D000006 ORTHO05D004030 2.4e-60 235.3 120 91.7
Cfa015957 Carpinus fangiana HOM05D000006 ORTHO05D004030 3.1e-60 235.0 120 90.8
CiPaw.05G229200 Carya illinoinensis HOM05D000006 ORTHO05D004030 3.1e-60 235.0 120 90.8
CiPaw.06G024600 Carya illinoinensis HOM05D000006 ORTHO05D004030 3.1e-60 235.0 120 90.8
Cc04_g08910 Coffea canephora HOM05D000006 ORTHO05D004030 3.1e-60 235.0 120 91.7
Haze_00526 Corylus avellana HOM05D000006 ORTHO05D004030 3.1e-60 235.0 120 90.8
MELO3C022788.2 Cucumis melo HOM05D000006 ORTHO05D004030 3.1e-60 235.0 120 91.7
CsaV3_5G023540 Cucumis sativus L. HOM05D000006 ORTHO05D004030 3.1e-60 235.0 120 91.7
QL05p058776 Quercus lobata HOM05D000006 ORTHO05D004030 3.1e-60 235.0 120 91.7
Sed0027470 Sechium edule HOM05D000006 ORTHO05D004030 3.1e-60 235.0 120 91.7
EL10Ac1g00041 Beta vulgaris HOM05D000006 ORTHO05D004030 4.1e-60 234.6 120 90.8
AUR62004690 Chenopodium quinoa HOM05D000006 ORTHO05D004030 4.1e-60 234.6 120 90.8
DCAR_014281 Daucus carota HOM05D000006 ORTHO05D004030 4.1e-60 234.6 120 91.7
Sabra02G0070500 Salix brachista HOM05D000006 ORTHO05D004030 4.1e-60 234.6 119 91.6
SEGI_25942 Sequoiadendron giganteum HOM05D000006 ORTHO05D004030 4.1e-60 234.6 120 90.0
THA.LOC104799527 Tarenaya hassleriana HOM05D000006 ORTHO05D004030 4.1e-60 234.6 120 91.7
HPP92_004738 Vanilla planifolia HOM05D000006 ORTHO05D004030 4.1e-60 234.6 120 91.7
ECA247G3040 Erigeron canadensis HOM05D000006 ORTHO05D000091 5.3e-60 234.2 120 90.8
THA.LOC104819319 Tarenaya hassleriana HOM05D000006 ORTHO05D004030 5.3e-60 234.2 120 90.8
TWI79G1190 Tripterygium wilfordii HOM05D000006 ORTHO05D004030 5.3e-60 234.2 120 90.8
SGA_v2.0_scaffold25G11094 Striga asiatica HOM05D000006 ORTHO05D004030 7.0e-60 233.8 119 91.6
ATR0564G159 Amborella trichopoda HOM05D000006 ORTHO05D004030 9.1e-60 233.4 120 90.8
AL6G20140 Arabidopsis lyrata HOM05D000006 ORTHO05D004030 9.1e-60 233.4 120 90.8
BcaB08g37162 Brassica carinata HOM05D000006 ORTHO05D004030 9.1e-60 233.4 120 90.8
BcaB08g37191 Brassica carinata HOM05D000006 ORTHO05D004030 9.1e-60 233.4 120 90.8
A10p27700 Brassica napus HOM05D000006 ORTHO05D004030 9.1e-60 233.4 120 90.8
C09p67790 Brassica napus HOM05D000006 ORTHO05D004030 9.1e-60 233.4 120 90.8
BolC9t59541H Brassica oleracea HOM05D000006 ORTHO05D004030 9.1e-60 233.4 120 90.8
BraA10t44822Z Brassica rapa HOM05D000006 ORTHO05D004030 9.1e-60 233.4 120 90.8
Thhalv10013550m.g Eutrema salsugineum HOM05D000006 ORTHO05D004030 9.1e-60 233.4 120 90.8
Nn1g05200 Nelumbo nucifera HOM05D000006 ORTHO05D004030 9.1e-60 233.4 120 90.8
Sp6g33660 Schrenkiella parvula HOM05D000006 ORTHO05D004030 9.1e-60 233.4 120 90.8
Aa31LG3G17360 Aethionema arabicum HOM05D000006 ORTHO05D004030 1.2e-59 233.0 120 90.8
ClCG03G009080 Citrullus lanatus HOM05D000006 ORTHO05D004030 1.2e-59 233.0 119 91.6
FvH4_5g38850 Fragaria vesca HOM05D000006 ORTHO05D004030 2.0e-59 232.3 120 90.0
FAN04G0021 Fragaria x ananassa HOM05D000006 ORTHO05D004030 2.0e-59 232.3 120 90.0
FAN08G2703 Fragaria x ananassa HOM05D000006 ORTHO05D004030 2.0e-59 232.3 120 90.0
FAN13G0359 Fragaria x ananassa HOM05D000006 ORTHO05D004030 2.0e-59 232.3 120 90.0
FAN18G2681 Fragaria x ananassa HOM05D000006 ORTHO05D004030 2.0e-59 232.3 120 90.0
RcHm_v2.0_Chr7g0240841 Rosa chinensis HOM05D000006 ORTHO05D004030 2.0e-59 232.3 120 90.0
SalBow7G0198 Salvia bowleyana HOM05D000006 ORTHO05D004030 2.0e-59 232.3 120 90.0
SalBow7G3631 Salvia bowleyana HOM05D000006 ORTHO05D004030 2.0e-59 232.3 120 90.0
Aa31LG1G17340 Aethionema arabicum HOM05D000006 ORTHO05D004030 2.6e-59 231.9 120 90.0
CARHR203660 Cardamine hirsuta HOM05D000006 ORTHO05D004030 2.6e-59 231.9 120 90.0
Ah.05g172680 Amaranthus hybridus HOM05D000006 ORTHO05D004030 3.5e-59 231.5 120 89.2
AL8G42020 Arabidopsis lyrata HOM05D000006 ORTHO05D004030 5.9e-59 230.7 120 89.2
AT5G64610 Arabidopsis thaliana HOM05D000006 ORTHO05D004030 5.9e-59 230.7 120 89.2
BcaB04g19978 Brassica carinata HOM05D000006 ORTHO05D004030 5.9e-59 230.7 120 89.2
Carub.0008s2540 Capsella rubella HOM05D000006 ORTHO05D004030 5.9e-59 230.7 120 89.2
CARHR278580 Cardamine hirsuta HOM05D000006 ORTHO05D004030 5.9e-59 230.7 120 89.2
Thhalv10004220m.g Eutrema salsugineum HOM05D000006 ORTHO05D004030 5.9e-59 230.7 120 89.2
Sp2g27670 Schrenkiella parvula HOM05D000006 ORTHO05D004030 5.9e-59 230.7 120 89.2
AT5G09740 Arabidopsis thaliana HOM05D000006 ORTHO05D004030 7.7e-59 230.3 120 90.0
TAR628G0303 Trochodendron aralioides HOM05D000006 ORTHO05D004030 7.7e-59 230.3 119 89.9
BcaC04g23307 Brassica carinata HOM05D000006 ORTHO05D004030 1.7e-58 229.2 120 88.3
A09p08740 Brassica napus HOM05D000006 ORTHO05D004030 1.7e-58 229.2 120 88.3
C09p09880 Brassica napus HOM05D000006 ORTHO05D004030 1.7e-58 229.2 120 88.3
BolC9t53896H Brassica oleracea HOM05D000006 ORTHO05D004030 1.7e-58 229.2 120 88.3
BraA09t36523Z Brassica rapa HOM05D000006 ORTHO05D004030 1.7e-58 229.2 120 88.3
CAN.G222.83 Capsicum annuum HOM05D000006 ORTHO05D004030 1.7e-58 229.2 118 89.0
Mapoly0014s0119 Marchantia polymorpha HOM05D000006 ORTHO05D004030 1.7e-58 229.2 120 87.5
AagrBONN_evm.TU.Sc2ySwM_344.1570 Anthoceros agrestis HOM05D000006 ORTHO05D004030 2.9e-58 228.4 120 86.7
Rhsim11G0065000 Rhododendron simsii HOM05D000006 ORTHO05D004030 2.9e-58 228.4 130 84.6
Pp3c4_18030 Physcomitrium patens HOM05D000006 ORTHO05D004030 5.0e-58 227.6 120 86.7
SMO351G0268 Selaginella moellendorffii HOM05D000006 ORTHO05D004030 6.5e-58 227.3 120 86.7
CBR_g17677 Chara braunii HOM05D000006 ORTHO05D004030 1.5e-57 226.1 120 86.7
Peaxi162Scf00360g00314 Petunia axillaris HOM05D000006 ORTHO05D004030 9.4e-57 223.4 144 77.1
Oeu039581.2 Olea europaea HOM05D000006 ORTHO05D004030 3.6e-56 221.5 141 78.0
CAN.G255.14 Capsicum annuum HOM05D000006 ORTHO05D004030 1.8e-55 219.2 115 88.7
Manes.18G072700 Manihot esculenta HOM05D000006 ORTHO05D004030 2.6e-54 215.3 119 85.7
Nn5g28927 Nelumbo nucifera HOM05D000006 ORTHO05D004030 4.4e-54 214.5 119 85.7
vmacro12808 Vaccinium macrocarpon HOM05D000006 ORTHO05D004030 9.1e-52 206.8 122 81.1
Aqoxy6G00495 Aquilegia oxysepala HOM05D000006 ORTHO05D004030 2.5e-49 198.7 118 78.0
PRCOL_00001934 Prasinoderma coloniale HOM05D000006 ORTHO05D004030 8.3e-45 183.7 124 70.2
Cre03.g143907 Chlamydomonas reinhardtii HOM05D000006 ORTHO05D004030 5.4e-44 181.0 119 69.7
MCO10G273 Micromonas commoda HOM05D000006 ORTHO05D004030 4.5e-43 177.9 123 69.9
Haze_26687 Corylus avellana HOM05D000006 ORTHO05D004030 5.9e-43 177.6 120 67.5
Duzib116G0798 Durio zibethinus HOM05D000006 ORTHO05D004030 1.7e-42 176.0 120 74.2
Lj7C307G3 Lonicera japonica HOM05D000006 ORTHO05D004030 1.7e-42 176.0 120 74.2
MBI04_g34117_MAGBIO Magnolia biondii HOM05D000006 ORTHO05D004030 2.2e-42 175.6 120 73.3
CDE02G1825 Ceratophyllum demersum HOM05D000006 ORTHO05D004030 6.5e-42 174.1 89 89.9
AUR62023606 Chenopodium quinoa HOM05D000006 ORTHO05D004030 8.5e-42 173.7 120 72.5
SGA_v2.0_scaffold28G12032 Striga asiatica HOM05D000006 ORTHO05D004030 8.0e-40 167.2 105 78.1
Haze_26200 Corylus avellana HOM05D000006 ORTHO05D004030 1.5e-38 162.9 116 62.1
Mapoly0014s0220 Marchantia polymorpha HOM05D000006 ORTHO05D004030 9.8e-38 160.2 148 53.4
Cre13.g587150 Chlamydomonas reinhardtii HOM05D000006 ORTHO05D004030 1.3e-37 159.8 136 59.6
MCO09G855 Micromonas commoda HOM05D000006 ORTHO05D004030 1.3e-37 159.8 134 64.2
Pp3c2_37980 Physcomitrium patens HOM05D000006 ORTHO05D004030 4.9e-37 157.9 153 52.9
SEGI_33287 Sequoiadendron giganteum HOM05D000006 ORTHO05D004030 7.0e-36 154.1 152 52.0
CAN.G1733.7 Capsicum annuum HOM05D000006 ORTHO05D004030 9.2e-36 153.7 101 72.3
Gorai.011G166000 Gossypium raimondii HOM05D000006 ORTHO05D004030 1.2e-35 153.3 81 88.9
Haze_27167 Corylus avellana HOM05D000006 ORTHO05D004030 1.3e-34 149.8 120 57.5
Cfa025466 Carpinus fangiana HOM05D000006 ORTHO05D004030 1.5e-33 146.4 112 57.1
FAN25G2177 Fragaria x ananassa HOM05D000006 ORTHO05D004030 1.5e-33 146.4 76 86.8
AagrBONN_evm.TU.Sc2ySwM_344.3271 Anthoceros agrestis HOM05D000006 ORTHO05D004030 1.9e-33 146.0 152 50.7
Cfa027305 Carpinus fangiana HOM05D000006 ORTHO05D004030 5.6e-33 144.4 112 60.7
MCO10G130 Micromonas commoda HOM05D000006 ORTHO05D004030 2.1e-32 142.5 129 56.6
PRCOL_00006094 Prasinoderma coloniale HOM05D000006 ORTHO05D004030 4.9e-29 131.3 136 51.5
BcaC01g02690 Brassica carinata HOM05D000006 ORTHO05D004030 3.2e-28 128.6 126 52.4
Haze_26386 Corylus avellana HOM05D000006 ORTHO05D004030 4.1e-28 128.3 129 51.9
CAN.G523.61 Capsicum annuum HOM05D001058 ORTHO05D000911 8.6e-26 120.6 119 55.5
PSO541G6025 Papaver somniferum HOM05D000006 ORTHO05D004030 1.4e-23 113.2 117 49.6
PSO675G4731 Papaver somniferum HOM05D000006 ORTHO05D004030 1.4e-23 113.2 117 49.6
SEGI_24978 Sequoiadendron giganteum HOM05D000006 ORTHO05D004030 1.0e-18 97.1 64 67.2
arahy.Tifrunner.gnm1.ann1.B34789 Arachis hypogaea HOM05D000006 ORTHO05D004030 2.5e-17 92.4 54 79.6
arahy.Tifrunner.gnm1.ann1.KN38JA Arachis hypogaea HOM05D000006 ORTHO05D004030 2.5e-17 92.4 54 79.6
Cfa026876 Carpinus fangiana HOM05D000006 ORTHO05D004030 4.3e-17 91.7 101 43.6
PSO210G6350 Papaver somniferum HOM05D000006 ORTHO05D004030 9.5e-17 90.5 114 40.4
arahy.Tifrunner.gnm1.ann1.10Y5RS Arachis hypogaea HOM05D000006 ORTHO05D004030 4.7e-16 88.2 50 80.0
A06p31330 Brassica napus HOM05D000006 ORTHO05D004030 8.1e-16 87.4 67 64.2
SEGI_04115 Sequoiadendron giganteum HOM05D000006 ORTHO05D004030 5.4e-12 74.7 95 43.2
Zm00001eb109790 Zea mays HOM05D000006 ORTHO05D004030 5.4e-12 74.7 35 97.1
BraA06t26075Z Brassica rapa HOM05D000006 ORTHO05D004030 5.1e-10 68.2 48 64.6
TAR376G0202 Trochodendron aralioides HOM05D000006 ORTHO05D004030 2.3e-07 59.3 34 76.5


User provided reference genes

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