Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G953.11 Capsicum annuum HOM05D003501 ORTHO05D004388 4.5e-141 504.6 257 100.0
Sopen02g018490 Solanum pennellii HOM05D003501 ORTHO05D004388 9.1e-126 453.8 246 93.5
Solyc02g069340.4 Solanum lycopersicum HOM05D003501 ORTHO05D004388 1.2e-125 453.4 246 93.1
PGSC0003DMG400021209 Solanum tuberosum HOM05D003501 ORTHO05D004388 7.7e-125 450.7 246 92.7
Peaxi162Scf00683g00345 Petunia axillaris HOM05D003501 ORTHO05D004388 1.9e-123 446.0 246 91.5
Lj2A610G28 Lonicera japonica HOM05D003501 ORTHO05D004388 2.3e-105 386.0 247 78.5
HanXRQChr11g0321781 Helianthus annuus HOM05D003501 ORTHO05D004388 1.1e-102 377.1 246 75.2
Lsat_1_v5_gn_4_134160 Lactuca sativa HOM05D003501 ORTHO05D004388 1.4e-102 376.7 248 76.6
SGA_v2.0_scaffold135G34778 Striga asiatica HOM05D003501 ORTHO05D004388 5.4e-102 374.8 246 76.4
Dinv15534 Davidia involucrata HOM05D003501 ORTHO05D004388 9.2e-102 374.0 254 75.2
Rhsim08G0066100 Rhododendron simsii HOM05D003501 ORTHO05D004388 3.5e-101 372.1 247 76.1
MSTRG.12186 Avicennia marina HOM05D003501 ORTHO05D004388 1.0e-100 370.5 246 74.4
ECA232G0193 Erigeron canadensis HOM05D003501 ORTHO05D004388 1.3e-100 370.2 246 74.8
Manes.04G047600 Manihot esculenta HOM05D003501 ORTHO05D004388 5.0e-100 368.2 246 74.4
TAR481G0007 Trochodendron aralioides HOM05D003501 ORTHO05D004388 6.6e-100 367.9 248 76.2
Sc10g0003820 Simmondsia chinensis HOM05D003501 ORTHO05D004388 1.1e-99 367.1 247 74.9
Hund15639 Selenicereus undatus HOM05D003501 ORTHO05D004388 1.5e-99 366.7 244 75.8
Cc07_g02990 Coffea canephora HOM05D003501 ORTHO05D004388 3.3e-99 365.5 247 74.9
vmacro18212 Vaccinium macrocarpon HOM05D003501 ORTHO05D004388 3.3e-99 365.5 247 75.3
CSS0017931 Camellia sinensis var. sinensis HOM05D003501 ORTHO05D004388 4.3e-99 365.2 247 74.9
Migut.H00888 Erythranthe guttata HOM05D003501 ORTHO05D004388 4.3e-99 365.2 246 74.0
Hma1.2p1_0199F.1_g085800 Hydrangea macrophylla HOM05D003501 ORTHO05D004388 1.6e-98 363.2 247 74.5
MD10G1234700 Malus domestica HOM05D003501 ORTHO05D004388 4.7e-98 361.7 247 72.9
SalBow1G3035 Salvia bowleyana HOM05D003501 ORTHO05D004388 4.0e-97 358.6 244 75.0
CiPaw.14G095200 Carya illinoinensis HOM05D003501 ORTHO05D004388 3.4e-96 355.5 246 73.2
Haze_23560 Corylus avellana HOM05D003501 ORTHO05D004388 3.4e-96 355.5 246 73.6
PGR102G2752 Punica granatum HOM05D003501 ORTHO05D004388 4.4e-96 355.1 246 71.1
Potri.001G216400 Populus trichocarpa HOM05D003501 ORTHO05D004388 5.7e-96 354.8 246 73.2
Cfa010173 Carpinus fangiana HOM05D003501 ORTHO05D004388 7.5e-96 354.4 246 72.8
CiPaw.08G137600 Carya illinoinensis HOM05D003501 ORTHO05D004388 7.5e-96 354.4 246 72.4
Potri.009G016000 Populus trichocarpa HOM05D003501 ORTHO05D004388 7.5e-96 354.4 246 73.6
TWI79G0225 Tripterygium wilfordii HOM05D003501 ORTHO05D004388 9.8e-96 354.0 245 74.7
PGSC0003DMG400006605 Solanum tuberosum HOM05D003501 ORTHO05D004388 1.7e-95 353.2 196 90.8
PSO063G0318 Papaver somniferum HOM05D003501 ORTHO05D004388 2.2e-95 352.8 246 72.8
Actinidia38747 Actinidia chinensis HOM05D003501 ORTHO05D004388 2.9e-95 352.4 247 72.9
EL10As4g23426 Beta vulgaris HOM05D003501 ORTHO05D004388 4.9e-95 351.7 246 72.0
Prupe.4G110100 Prunus persica HOM05D003501 ORTHO05D004388 6.4e-95 351.3 247 71.7
Eucgr.B03813 Eucalyptus grandis HOM05D003501 ORTHO05D004388 8.3e-95 350.9 246 74.0
PSO170G5263 Papaver somniferum HOM05D003501 ORTHO05D004388 1.8e-94 349.7 246 72.0
PSO170G6031 Papaver somniferum HOM05D003501 ORTHO05D004388 2.4e-94 349.4 246 72.0
RcHm_v2.0_Chr5g0019871 Rosa chinensis HOM05D003501 ORTHO05D004388 5.4e-94 348.2 246 70.3
Ah.11g044900 Amaranthus hybridus HOM05D003501 ORTHO05D004388 7.0e-94 347.8 246 72.4
FAN21G1855 Fragaria x ananassa HOM05D003501 ORTHO05D004388 1.2e-93 347.1 246 70.3
FvH4_3g12140 Fragaria vesca HOM05D003501 ORTHO05D004388 2.7e-93 345.9 246 70.3
FAN16G1741 Fragaria x ananassa HOM05D003501 ORTHO05D004388 2.7e-93 345.9 246 70.3
FAN25G1502 Fragaria x ananassa HOM05D003501 ORTHO05D004388 2.7e-93 345.9 246 70.3
Actinidia26218 Actinidia chinensis HOM05D003501 ORTHO05D004388 7.8e-93 344.4 247 71.7
Oeu018673.1 Olea europaea HOM05D003501 ORTHO05D004388 1.3e-92 343.6 247 70.4
Aqoxy3G03267 Aquilegia oxysepala HOM05D003501 ORTHO05D004388 6.6e-92 341.3 244 69.3
Ciclev10028663m.g Citrus clementina HOM05D003501 ORTHO05D004388 2.5e-91 339.3 246 71.1
Nitab4.5_0010866g0010 Nicotiana tabacum HOM05D003501 ORTHO05D004388 9.5e-91 337.4 246 73.6
VMungo0720G0165 Vigna mungo HOM05D003501 ORTHO05D004388 6.2e-90 334.7 247 68.0
arahy.Tifrunner.gnm1.ann1.57UCU4 Arachis hypogaea HOM05D003501 ORTHO05D004388 8.0e-90 334.3 247 69.2
Atru.chr3.3108 Acer truncatum HOM05D003501 ORTHO05D004388 1.0e-89 334.0 246 71.5
Lj2g0019396 Lotus japonicus HOM05D003501 ORTHO05D004388 1.4e-89 333.6 247 68.0
Sabra16G0127400 Salix brachista HOM05D003501 ORTHO05D004388 4.0e-89 332.0 246 71.1
arahy.Tifrunner.gnm1.ann1.FG3FW1 Arachis hypogaea HOM05D003501 ORTHO05D004388 5.2e-89 331.6 247 69.2
Phvul.002G221600 Phaseolus vulgaris HOM05D003501 ORTHO05D004388 6.8e-89 331.3 247 67.2
Lalb_Chr09g0327341 Lupinus albus HOM05D003501 ORTHO05D004388 2.0e-88 329.7 244 68.4
SHI25258 Sapria himalayana HOM05D003501 ORTHO05D004388 2.6e-88 329.3 244 68.9
Cpa.g.sc56.89 Carica papaya HOM05D003501 ORTHO05D004388 3.4e-88 328.9 247 68.8
Thecc.09G271900 Theobroma cacao HOM05D003501 ORTHO05D004388 3.4e-88 328.9 246 68.7
DCAR_025365 Daucus carota HOM05D003501 ORTHO05D004388 5.8e-88 328.2 246 70.3
VMungo0251G0431 Vigna mungo HOM05D003501 ORTHO05D004388 7.5e-88 327.8 245 66.9
Glyma.13G179100 Glycine max HOM05D003501 ORTHO05D004388 1.3e-87 327.0 247 66.8
MBI14_g02806_MAGBIO Magnolia biondii HOM05D003501 ORTHO05D004388 1.3e-87 327.0 247 68.0
MBI14_g41488_MAGBIO Magnolia biondii HOM05D003501 ORTHO05D004388 1.3e-87 327.0 247 68.0
Glyma.01G143200 Glycine max HOM05D003501 ORTHO05D004388 6.4e-87 324.7 247 66.4
Aa31LG2G15030 Aethionema arabicum HOM05D003501 ORTHO05D004388 8.3e-87 324.3 248 66.9
Duzib168G1975 Durio zibethinus HOM05D003501 ORTHO05D004388 8.3e-87 324.3 247 67.6
Lj2g0023176 Lotus japonicus HOM05D003501 ORTHO05D004388 1.1e-86 323.9 244 66.8
CSS0035358 Camellia sinensis var. sinensis HOM05D003501 ORTHO05D004388 1.4e-86 323.6 246 70.7
Nn8g40776 Nelumbo nucifera HOM05D003501 ORTHO05D004388 1.4e-86 323.6 231 71.0
GSVIVG01032606001 Vitis vinifera HOM05D003501 ORTHO05D004388 1.9e-86 323.2 247 67.6
HPP92_001388 Vanilla planifolia HOM05D003501 ORTHO05D004388 7.0e-86 321.2 246 66.7
Gohir.A09G099800 Gossypium hirsutum HOM05D003501 ORTHO05D004388 2.7e-85 319.3 247 66.4
Ca_12888_v3 Cicer arietinum L. HOM05D003501 ORTHO05D004388 6.0e-85 318.2 249 65.5
Atru.chr9.1898 Acer truncatum HOM05D003501 ORTHO05D004388 1.7e-84 316.6 247 67.2
Gohir.D09G099200 Gossypium hirsutum HOM05D003501 ORTHO05D004388 1.5e-83 313.5 247 65.6
Gorai.006G116200 Gossypium raimondii HOM05D003501 ORTHO05D004388 1.5e-83 313.5 247 65.6
AUR62029643 Chenopodium quinoa HOM05D003501 ORTHO05D004388 4.3e-83 312.0 234 70.9
unitig_21.g20948 Utricularia gibba HOM05D003501 ORTHO05D004388 4.3e-83 312.0 243 66.3
THA.LOC104809596 Tarenaya hassleriana HOM05D003501 ORTHO05D004388 9.5e-83 310.8 250 64.8
Psat7g031640 Pisum sativum HOM05D003501 ORTHO05D004388 1.6e-82 310.1 247 64.8
TPR.G12888 Trifolium pratense HOM05D003501 ORTHO05D004388 2.8e-82 309.3 242 65.3
Thhalv10013826m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 8.1e-82 307.8 245 65.3
Medtr8g098715 Medicago truncatula HOM05D003501 ORTHO05D004388 8.1e-82 307.8 242 64.5
BolC8t47419H Brassica oleracea HOM05D003501 ORTHO05D004388 2.3e-81 306.2 244 64.8
BraA08t32548Z Brassica rapa HOM05D003501 ORTHO05D004388 2.3e-81 306.2 244 64.3
AL6G33080 Arabidopsis lyrata HOM05D003501 ORTHO05D004388 3.1e-81 305.8 246 64.2
Sed0017179 Sechium edule HOM05D003501 ORTHO05D004388 3.1e-81 305.8 246 64.2
MD05G1254500 Malus domestica HOM05D003501 ORTHO05D004388 6.8e-81 304.7 253 64.0
AT5G22100 Arabidopsis thaliana HOM05D003501 ORTHO05D004388 1.2e-80 303.9 246 64.2
Sp6g23090 Schrenkiella parvula HOM05D003501 ORTHO05D004388 1.2e-80 303.9 245 63.3
SMO144G0146 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 3.4e-80 302.4 244 63.1
BcaC07g37193 Brassica carinata HOM05D003501 ORTHO05D004388 5.8e-80 301.6 244 64.3
Carub.0006s1974 Capsella rubella HOM05D003501 ORTHO05D004388 5.8e-80 301.6 246 64.2
BcaB07g33815 Brassica carinata HOM05D003501 ORTHO05D004388 1.3e-79 300.4 243 62.6
BcaC08g42972 Brassica carinata HOM05D003501 ORTHO05D004388 2.2e-79 299.7 244 62.7
C06p02140 Brassica napus HOM05D003501 ORTHO05D004388 2.2e-79 299.7 244 62.7
BcaB04g17480 Brassica carinata HOM05D003501 ORTHO05D004388 2.9e-79 299.3 244 63.5
A10p06220 Brassica napus HOM05D003501 ORTHO05D004388 2.9e-79 299.3 244 62.7
BolC6t35344H Brassica oleracea HOM05D003501 ORTHO05D004388 2.9e-79 299.3 244 62.7
BraA10t42890Z Brassica rapa HOM05D003501 ORTHO05D004388 6.4e-79 298.1 244 62.3
Pp3c15_22440 Physcomitrium patens HOM05D003501 ORTHO05D004388 8.3e-79 297.7 245 60.0
Mapoly0187s0002 Marchantia polymorpha HOM05D003501 ORTHO05D004388 1.1e-78 297.4 248 62.1
Thhalv10028736m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 3.2e-78 295.8 248 61.7
Os03g0833700 Oryza sativa ssp. japonica HOM05D003501 ORTHO05D004388 7.1e-78 294.7 244 60.7
A08p05420 Brassica napus HOM05D003501 ORTHO05D004388 1.2e-77 293.9 269 57.6
CDE01G0277 Ceratophyllum demersum HOM05D003501 ORTHO05D004388 1.6e-77 293.5 238 62.6
Zm00001eb316080 Zea mays HOM05D003501 ORTHO05D004388 1.0e-76 290.8 245 59.2
ClCG03G012190 Citrullus lanatus HOM05D003501 ORTHO05D004388 1.3e-76 290.4 243 61.7
COL.COLO4_25421 Corchorus olitorius HOM05D003501 ORTHO05D004388 1.3e-76 290.4 223 65.9
AagrBONN_evm.TU.Sc2ySwM_368.3338 Anthoceros agrestis HOM05D003501 ORTHO05D004388 3.9e-76 288.9 245 59.2
C08p05880 Brassica napus HOM05D003501 ORTHO05D004388 3.9e-76 288.9 275 57.1
SalBow8G4485 Salvia bowleyana HOM05D003501 ORTHO05D004388 3.9e-76 288.9 247 61.5
MELO3C015060.2 Cucumis melo HOM05D003501 ORTHO05D004388 1.1e-75 287.3 243 60.9
AUR62025912 Chenopodium quinoa HOM05D003501 ORTHO05D004388 9.5e-75 284.3 233 66.1
CsaV3_1G043830 Cucumis sativus L. HOM05D003501 ORTHO05D004388 9.5e-75 284.3 243 60.1
CBR_g11105 Chara braunii HOM05D003501 ORTHO05D004388 2.6e-72 276.2 250 56.8
EL10Ac6g13118 Beta vulgaris HOM05D003501 ORTHO05D004388 5.8e-64 248.4 245 56.7
SalBow1G0615 Salvia bowleyana HOM05D003501 ORTHO05D004388 3.8e-63 245.7 247 55.9
Thhalv10029476m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 2.1e-58 229.9 248 53.2
Prupe.6G111200 Prunus persica HOM05D003501 ORTHO05D004388 3.6e-58 229.2 254 50.8
Cre09.g400367 Chlamydomonas reinhardtii HOM05D003501 ORTHO05D004388 1.8e-57 226.9 247 48.6
QL05p062772 Quercus lobata HOM05D003501 ORTHO05D004388 6.9e-57 224.9 176 64.2
SHI03441 Sapria himalayana HOM05D003501 ORTHO05D004388 1.2e-56 224.2 193 61.1
Actinidia15653 Actinidia chinensis HOM05D003501 ORTHO05D004388 2.7e-53 213.0 142 76.1
CARHR072400 Cardamine hirsuta HOM05D003501 ORTHO05D004388 2.3e-52 209.9 182 58.2
Nitab4.5_0005797g0050 Nicotiana tabacum HOM05D003501 ORTHO05D004388 1.1e-49 201.1 107 93.5
SMO361G0623 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.1e-49 201.1 197 56.9
SMO364G0671 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.2e-48 197.6 165 60.0
Phvul.002G299004 Phaseolus vulgaris HOM05D003501 ORTHO05D004388 2.6e-48 196.4 150 66.0
Prupe.6G112100 Prunus persica HOM05D003501 ORTHO05D004388 2.4e-46 189.9 152 63.8
SMO004G0007 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 9.3e-46 188.0 164 57.9
Haze_27241 Corylus avellana HOM05D003501 ORTHO05D004388 9.6e-43 177.9 246 43.5
PRCOL_00006339 Prasinoderma coloniale HOM05D003501 ORTHO05D004388 1.3e-39 167.5 242 40.9
SMO330G0055 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.3e-39 167.5 141 60.3
SMO065G0004 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.1e-38 164.5 141 58.9
SMO112G0083 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 7.1e-38 161.8 141 59.6
MCO16G220 Micromonas commoda HOM05D003501 ORTHO05D004388 2.1e-37 160.2 349 32.7
arahy.Tifrunner.gnm1.ann1.3N5Q80 Arachis hypogaea HOM05D003501 ORTHO05D004388 2.1e-29 133.7 104 66.3
HPP92_000050 Vanilla planifolia HOM05D003501 ORTHO05D004388 7.9e-29 131.7 132 53.8
HPP92_028228 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.1e-27 127.9 86 70.9
HPP92_027915 Vanilla planifolia HOM05D003501 ORTHO05D004388 3.3e-27 126.3 85 71.8
SMO112G0124 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 4.3e-27 125.9 190 41.6
HPP92_000028 Vanilla planifolia HOM05D003501 ORTHO05D004388 7.4e-27 125.2 86 68.6
SMO201G0018 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 2.2e-26 123.6 220 39.5
SMO112G0081 Selaginella moellendorffii HOM05D016263 ORTHO05D003616 8.2e-26 121.7 244 36.5
CARHR191430 Cardamine hirsuta HOM05D003501 ORTHO05D004388 3.4e-24 116.3 99 61.6
HPP92_000027 Vanilla planifolia HOM05D003501 ORTHO05D004388 2.2e-23 113.6 84 69.0
ATR0097G041 Amborella trichopoda HOM05D003501 ORTHO05D004388 2.1e-21 107.1 103 57.3
SMO163G0016 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.0e-20 104.8 92 55.4
SMO114G0139 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 2.0e-19 100.5 179 40.2
SMO269G0020 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 2.0e-19 100.5 94 56.4
SMO353G0041 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 2.6e-19 100.1 244 33.2
Cfa022309 Carpinus fangiana HOM05D003501 ORTHO05D004388 9.7e-19 98.2 261 32.2
MD11G1147100 Malus domestica HOM05D003501 ORTHO05D004388 3.7e-18 96.3 70 67.1
EL10As8g23847 Beta vulgaris HOM05D003501 ORTHO05D004388 3.1e-17 93.2 68 69.1
SMO265G0024 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 9.1e-17 91.7 95 51.6
CDE12G0385 Ceratophyllum demersum HOM05D003501 ORTHO05D004388 5.9e-16 89.0 82 58.5
HPP92_000031 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.0e-15 88.2 92 51.1
EL10Ac4g08784 Beta vulgaris HOM05D003501 ORTHO05D004388 2.2e-15 87.0 144 38.9
ECA232G4075 Erigeron canadensis HOM05D003501 ORTHO05D004388 1.1e-14 84.7 80 55.0
SMO146G0031 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.4e-14 84.3 95 50.5
Glyma.07G212600 Glycine max HOM05D003501 ORTHO05D004388 5.5e-14 82.4 56 69.6
HPP92_028030 Vanilla planifolia HOM05D003501 ORTHO05D004388 7.2e-14 82.0 49 75.5
Actinidia15652 Actinidia chinensis HOM05D003501 ORTHO05D004388 2.3e-12 77.0 54 68.5
SMO194G0041 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 6.3e-10 68.9 86 44.2
Actinidia23574 Actinidia chinensis HOM05D003501 ORTHO05D057363 9.1e-09 65.1 166 32.5
SMO340G0317 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 9.1e-09 65.1 84 42.9


User provided reference genes

Program Settings