Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G943.40 Capsicum annuum HOM05D004008 ORTHO05D005383 1.9e-201 705.7 366 100.0
PGSC0003DMG400022126 Solanum tuberosum HOM05D004008 ORTHO05D005383 1.4e-191 672.9 366 95.1
Sopen07g034650 Solanum pennellii HOM05D004008 ORTHO05D005383 8.8e-191 670.2 366 94.5
Solyc07g066470.3 Solanum lycopersicum HOM05D004008 ORTHO05D005383 7.5e-190 667.2 366 94.0
Peaxi162Scf00452g00831 Petunia axillaris HOM05D004008 ORTHO05D005383 2.2e-186 655.6 366 92.3
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 3.7e-181 638.3 358 91.3
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 2.1e-176 622.5 393 83.5
Nitab4.5_0001791g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 2.3e-170 602.4 357 87.4
Nitab4.5_0000134g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 3.3e-169 598.6 354 86.7
Peaxi162Scf00006g00139 Petunia axillaris HOM05D004008 ORTHO05D005383 6.1e-168 594.3 394 81.2
Oeu052004.1 Olea europaea HOM05D004008 ORTHO05D005383 6.2e-160 567.8 348 83.0
Lsat_1_v5_gn_7_112100 Lactuca sativa HOM05D004008 ORTHO05D005383 8.9e-159 563.9 361 79.8
CANSAT78G1304 Cannabis sativa HOM05D004008 ORTHO05D005383 1.7e-157 559.7 358 82.4
Cc05_g16090 Coffea canephora HOM05D004008 ORTHO05D005383 3.7e-157 558.5 371 79.0
Haze_11762 Corylus avellana HOM05D004008 ORTHO05D005383 3.7e-157 558.5 349 81.9
Actinidia12791 Actinidia chinensis HOM05D004008 ORTHO05D005383 1.4e-156 556.6 355 80.0
CSS0024885 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 2.4e-156 555.8 351 80.9
Cfa008746 Carpinus fangiana HOM05D004008 ORTHO05D005383 9.2e-156 553.9 349 81.1
Prupe.1G348400 Prunus persica HOM05D004008 ORTHO05D005383 2.7e-155 552.4 366 79.2
Dinv19616 Davidia involucrata HOM05D004008 ORTHO05D005383 6.0e-155 551.2 356 78.7
SalBow8G2118 Salvia bowleyana HOM05D004008 ORTHO05D005383 3.0e-154 548.9 356 78.7
Hma1.2p1_0637F.1_g193530 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 5.0e-154 548.1 355 77.7
MD13G1004100 Malus domestica HOM05D004008 ORTHO05D005383 1.5e-153 546.6 360 78.1
Potri.007G072500 Populus trichocarpa HOM05D004008 ORTHO05D005383 1.9e-153 546.2 344 81.4
Glyma.11G094700 Glycine max HOM05D004008 ORTHO05D005383 2.5e-153 545.8 326 84.0
Dinv42507 Davidia involucrata HOM05D004008 ORTHO05D005383 3.3e-153 545.4 349 79.4
MD16G1003400 Malus domestica HOM05D004008 ORTHO05D005383 3.3e-153 545.4 344 80.8
Manes.11G103000 Manihot esculenta HOM05D004008 ORTHO05D005383 3.3e-153 545.4 351 80.1
Glyma.01G227400 Glycine max HOM05D004008 ORTHO05D005383 4.3e-153 545.0 358 79.6
CiPaw.01G129500 Carya illinoinensis HOM05D004008 ORTHO05D005383 5.6e-153 544.7 347 80.7
TWI75G1091 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 7.3e-153 544.3 345 81.2
GSVIVG01002505001 Vitis vinifera HOM05D004008 ORTHO05D005383 7.3e-153 544.3 325 83.7
Hma1.2p1_0334F.1_g128730 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 9.5e-153 543.9 340 80.0
CsaV3_3G031800 Cucumis sativus L. HOM05D004008 ORTHO05D005383 1.2e-152 543.5 351 79.2
Glyma.12G021100 Glycine max HOM05D004008 ORTHO05D005383 1.6e-152 543.1 326 83.7
Sed0006741 Sechium edule HOM05D004008 ORTHO05D005383 2.8e-152 542.3 352 79.5
TAR626G0539 Trochodendron aralioides HOM05D004008 ORTHO05D005383 3.6e-152 542.0 356 76.7
TAR626G1776 Trochodendron aralioides HOM05D004008 ORTHO05D005383 3.6e-152 542.0 356 76.7
unitig_21.g20251 Utricularia gibba HOM05D004008 ORTHO05D005383 3.6e-152 542.0 358 76.5
Lj1A905T43 Lonicera japonica HOM05D004008 ORTHO05D005383 4.7e-152 541.6 357 78.4
RcHm_v2.0_Chr4g0446801 Rosa chinensis HOM05D004008 ORTHO05D005383 4.7e-152 541.6 348 80.2
VMungo1215G1012 Vigna mungo HOM05D004008 ORTHO05D005383 4.7e-152 541.6 330 83.3
arahy.Tifrunner.gnm1.ann1.416KLQ Arachis hypogaea HOM05D004008 ORTHO05D005383 6.2e-152 541.2 365 77.8
arahy.Tifrunner.gnm1.ann1.KXDS8S Arachis hypogaea HOM05D004008 ORTHO05D005383 6.2e-152 541.2 361 78.9
QL12p007515 Quercus lobata HOM05D004008 ORTHO05D005383 6.2e-152 541.2 341 80.6
MSTRG.14544 Avicennia marina HOM05D004008 ORTHO05D005383 1.1e-151 540.4 355 76.9
Gorai.005G211000 Gossypium raimondii HOM05D004008 ORTHO05D005383 1.1e-151 540.4 332 81.9
Potri.005G091600 Populus trichocarpa HOM05D004008 ORTHO05D005383 1.1e-151 540.4 347 79.3
Medtr4g076600 Medicago truncatula HOM05D004008 ORTHO05D005383 1.8e-151 539.7 345 80.0
Ca_26057_v3 Cicer arietinum L. HOM05D004008 ORTHO05D005383 3.1e-151 538.9 326 83.1
Gohir.D02G188300 Gossypium hirsutum HOM05D004008 ORTHO05D005383 3.1e-151 538.9 332 81.6
ClCG10G012060 Citrullus lanatus HOM05D004008 ORTHO05D005383 4.0e-151 538.5 366 77.0
Migut.M01552 Erythranthe guttata HOM05D004008 ORTHO05D005383 5.2e-151 538.1 371 75.2
LjContig00222g0009052 Lotus japonicus HOM05D004008 ORTHO05D005383 6.8e-151 537.7 335 82.4
Eucgr.C00142 Eucalyptus grandis HOM05D004008 ORTHO05D005383 8.9e-151 537.3 339 81.7
Gohir.A03G165100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.2e-150 537.0 332 81.6
HanXRQChr05g0153591 Helianthus annuus HOM05D004008 ORTHO05D005383 2.6e-150 535.8 347 80.1
RcHm_v2.0_Chr1g0330101 Rosa chinensis HOM05D004008 ORTHO05D005383 3.4e-150 535.4 331 81.6
Ciclev10031858m.g Citrus clementina HOM05D004008 ORTHO05D005383 4.4e-150 535.0 347 79.0
Ah.10g029970 Amaranthus hybridus HOM05D004008 ORTHO05D005383 7.5e-150 534.3 348 78.4
HanXRQChr01g0007731 Helianthus annuus HOM05D004008 ORTHO05D005383 9.8e-150 533.9 358 77.9
FvH4_7g04700 Fragaria vesca HOM05D004008 ORTHO05D005383 1.3e-149 533.5 368 75.8
FAN10G2193 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.3e-149 533.5 368 75.8
Phvul.002G034500 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 1.3e-149 533.5 359 77.2
TPR.G11683 Trifolium pratense HOM05D004008 ORTHO05D005383 1.3e-149 533.5 326 82.5
Aqoxy6G00207 Aquilegia oxysepala HOM05D004008 ORTHO05D005383 1.7e-149 533.1 343 79.3
FAN07G1552 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.7e-149 533.1 345 78.8
FAN12G0417 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.2e-149 532.7 345 78.6
Lalb_Chr09g0320431 Lupinus albus HOM05D004008 ORTHO05D005383 2.2e-149 532.7 367 76.8
TWI12G0055 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 2.9e-149 532.3 345 79.7
Phvul.011G177100 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 4.9e-149 531.6 327 82.0
Psat7g172760 Pisum sativum HOM05D004008 ORTHO05D005383 4.9e-149 531.6 354 77.7
MSTRG.13067 Avicennia marina HOM05D004008 ORTHO05D005383 6.4e-149 531.2 358 75.7
Migut.H01689 Erythranthe guttata HOM05D004008 ORTHO05D005383 6.4e-149 531.2 359 75.2
arahy.Tifrunner.gnm1.ann1.6Z73IP Arachis hypogaea HOM05D004008 ORTHO05D005383 1.9e-148 529.6 358 76.0
Gorai.012G134300 Gossypium raimondii HOM05D004008 ORTHO05D005383 1.9e-148 529.6 315 83.8
PGR142G0362 Punica granatum HOM05D004008 ORTHO05D005383 4.1e-148 528.5 371 76.0
FAN03G0704 Fragaria x ananassa HOM05D004008 ORTHO05D005383 7.1e-148 527.7 364 75.8
Thecc.02G158900 Theobroma cacao HOM05D004008 ORTHO05D005383 2.1e-147 526.2 332 80.4
Rhsim06G0054400 Rhododendron simsii HOM05D004008 ORTHO05D005383 2.7e-147 525.8 368 75.5
VMungo1127G2017 Vigna mungo HOM05D004008 ORTHO05D005383 3.5e-147 525.4 322 82.0
COL.COLO4_33043 Corchorus olitorius HOM05D004008 ORTHO05D005383 7.8e-147 524.2 347 78.4
C09p68660 Brassica napus HOM05D004008 ORTHO05D005383 1.0e-146 523.9 351 76.9
CSS0025050 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 1.3e-146 523.5 369 75.1
Duzib132G0865 Durio zibethinus HOM05D004008 ORTHO05D005383 1.3e-146 523.5 335 79.4
C02p03470 Brassica napus HOM05D004008 ORTHO05D005383 1.7e-146 523.1 367 73.8
THA.LOC104800860 Tarenaya hassleriana HOM05D004008 ORTHO05D005383 1.7e-146 523.1 366 75.7
Aa31LG3G18290 Aethionema arabicum HOM05D004008 ORTHO05D005383 3.0e-146 522.3 351 76.9
A10p28400 Brassica napus HOM05D004008 ORTHO05D005383 3.0e-146 522.3 351 76.4
BraA10t44887Z Brassica rapa HOM05D004008 ORTHO05D005383 3.0e-146 522.3 351 76.4
Carub.0006s0716 Capsella rubella HOM05D004008 ORTHO05D005383 3.0e-146 522.3 364 73.9
Cpa.g.sc43.43 Carica papaya HOM05D004008 ORTHO05D005383 3.0e-146 522.3 330 81.2
BcaB01g05618 Brassica carinata HOM05D004008 ORTHO05D005383 6.6e-146 521.2 352 77.0
BolC3t12952H Brassica oleracea HOM05D004008 ORTHO05D005383 6.6e-146 521.2 352 77.0
EL10Ac2g02758 Beta vulgaris HOM05D004008 ORTHO05D005383 8.6e-146 520.8 331 77.9
BolC9t59612H Brassica oleracea HOM05D004008 ORTHO05D005383 8.6e-146 520.8 364 74.7
CARHR204850 Cardamine hirsuta HOM05D004008 ORTHO05D005383 8.6e-146 520.8 351 76.1
Sc10g0004580 Simmondsia chinensis HOM05D004008 ORTHO05D005383 8.6e-146 520.8 323 80.2
AL6G18680 Arabidopsis lyrata HOM05D004008 ORTHO05D005383 1.1e-145 520.4 364 73.6
AT5G08280 Arabidopsis thaliana HOM05D004008 ORTHO05D005383 1.1e-145 520.4 364 73.9
AUR62031735 Chenopodium quinoa HOM05D004008 ORTHO05D005383 1.1e-145 520.4 351 75.8
C03p04200 Brassica napus HOM05D004008 ORTHO05D005383 1.5e-145 520.0 352 76.7
AUR62032620 Chenopodium quinoa HOM05D004008 ORTHO05D005383 1.5e-145 520.0 356 75.0
BcaNung05097 Brassica carinata HOM05D004008 ORTHO05D005383 1.9e-145 519.6 351 76.4
Thhalv10013814m.g Eutrema salsugineum HOM05D004008 ORTHO05D005383 1.9e-145 519.6 365 74.8
ATR0763G059 Amborella trichopoda HOM05D004008 ORTHO05D005383 2.5e-145 519.2 345 76.8
A03p03710 Brassica napus HOM05D004008 ORTHO05D005383 2.5e-145 519.2 351 76.6
BraA03t09719Z Brassica rapa HOM05D004008 ORTHO05D005383 2.5e-145 519.2 351 76.6
Hund13394 Selenicereus undatus HOM05D004008 ORTHO05D005383 2.5e-145 519.2 341 76.0
ECA248G2166 Erigeron canadensis HOM05D004008 ORTHO05D005383 3.3e-145 518.8 317 83.0
Sp6g34680 Schrenkiella parvula HOM05D004008 ORTHO05D005383 4.3e-145 518.5 365 74.2
SGA_v2.0_scaffold186G40215 Striga asiatica HOM05D004008 ORTHO05D005383 7.3e-145 517.7 375 72.0
BraA02t04947Z Brassica rapa HOM05D004008 ORTHO05D005383 9.5e-145 517.3 362 73.8
FAN06G1123 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.6e-144 516.5 368 74.5
FAN06G2867 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.6e-144 516.5 368 74.5
Duzib248G1235 Durio zibethinus HOM05D004008 ORTHO05D005383 2.8e-144 515.8 332 78.9
BolC2t06308H Brassica oleracea HOM05D004008 ORTHO05D005383 3.6e-144 515.4 362 73.8
HPP92_002271 Vanilla planifolia HOM05D004008 ORTHO05D005383 1.4e-143 513.5 351 75.5
MBI18_g03839_MAGBIO Magnolia biondii HOM05D004008 ORTHO05D005383 2.3e-143 512.7 369 73.7
vmacro11667 Vaccinium macrocarpon HOM05D004008 ORTHO05D005383 3.1e-143 512.3 431 64.7
CDE05G3126 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 6.8e-143 511.1 360 73.3
Gohir.A04G108500 Gossypium hirsutum HOM05D004008 ORTHO05D005383 6.8e-143 511.1 315 81.9
PSO675G0755 Papaver somniferum HOM05D004008 ORTHO05D005383 1.2e-142 510.4 353 73.9
Sabra07G0061100 Salix brachista HOM05D004008 ORTHO05D005383 1.2e-142 510.4 422 66.1
PSO541G2232 Papaver somniferum HOM05D004008 ORTHO05D005383 3.4e-142 508.8 353 73.4
CDE11G0020 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 7.6e-142 507.7 345 74.8
Sabra05G0076100 Salix brachista HOM05D004008 ORTHO05D005383 7.6e-142 507.7 434 65.2
FAN17G0554 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.3e-141 506.9 301 84.1
Lj4g0025599 Lotus japonicus HOM05D004008 ORTHO05D005383 1.3e-141 506.9 357 74.5
CDE02G2123 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 2.9e-141 505.8 324 79.0
SGA_v2.0_scaffold7G03592 Striga asiatica HOM05D004008 ORTHO05D005383 9.2e-140 500.7 359 73.0
MELO3C024010.2 Cucumis melo HOM05D004008 ORTHO05D005383 3.9e-138 495.4 287 85.0
Gohir.D04G148100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 7.3e-137 491.1 287 85.0
DCAR_013737 Daucus carota HOM05D004008 ORTHO05D005383 9.6e-137 490.7 345 76.2
Os02g0168800 Oryza sativa ssp. japonica HOM05D004008 ORTHO05D005383 1.8e-135 486.5 351 70.7
BcaB08g37268 Brassica carinata HOM05D004008 ORTHO05D005383 1.2e-134 483.8 351 72.9
Zm00001eb207370 Zea mays HOM05D004008 ORTHO05D005383 3.4e-134 482.3 350 71.1
BcaC03g13214 Brassica carinata HOM05D004008 ORTHO05D005383 3.9e-130 468.8 362 69.1
Pp3c5_16770 Physcomitrium patens HOM05D004008 ORTHO05D005383 8.7e-130 467.6 350 69.1
Pp3c15_6300 Physcomitrium patens HOM05D004008 ORTHO05D005383 2.5e-129 466.1 336 71.4
Pp3c6_15990 Physcomitrium patens HOM05D004008 ORTHO05D005383 5.6e-129 464.9 312 74.4
TAR624G0715 Trochodendron aralioides HOM05D004008 ORTHO05D005383 7.3e-129 464.5 312 76.9
SMO364G0819 Selaginella moellendorffii HOM05D004008 ORTHO05D005383 3.6e-128 462.2 320 74.1
Mapoly0015s0060 Marchantia polymorpha HOM05D004008 ORTHO05D005383 8.1e-128 461.1 324 71.0
SEGI_21965 Sequoiadendron giganteum HOM05D004008 ORTHO05D005383 2.4e-127 459.5 299 77.6
CBR_g48425 Chara braunii HOM05D004008 ORTHO05D005383 3.4e-126 455.7 351 67.8
Zm00001eb233020 Zea mays HOM05D004008 ORTHO05D005383 1.1e-124 450.7 299 74.6
Cre16.g663900 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D005383 1.4e-116 423.7 322 68.3
Sed0020742 Sechium edule HOM05D004008 ORTHO05D005383 2.1e-112 409.8 250 83.2
Oeu001944.1 Olea europaea HOM05D004008 ORTHO05D005383 1.1e-111 407.5 254 83.1
MCO01G747 Micromonas commoda HOM05D004008 ORTHO05D005383 1.8e-106 390.2 321 62.6
FvH4_4g37020 Fragaria vesca HOM05D004008 ORTHO05D005383 4.1e-103 379.0 250 78.8
PRCOL_00005560 Prasinoderma coloniale HOM05D004008 ORTHO05D005383 4.8e-96 355.5 290 62.8
AagrBONN_evm.TU.Sc2ySwM_117.3714 Anthoceros agrestis HOM05D004008 ORTHO05D005383 2.5e-92 343.2 240 76.7
Nn7g38125 Nelumbo nucifera HOM05D004008 ORTHO05D005383 1.2e-73 281.2 192 75.5
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 1.2e-73 281.2 297 56.9
arahy.Tifrunner.gnm1.ann1.VI50KN Arachis hypogaea HOM05D004008 ORTHO05D005383 4.5e-70 269.2 193 75.1
Haze_26918 Corylus avellana HOM05D004008 ORTHO05D163716 6.5e-69 265.4 308 50.3
Actinidia07354 Actinidia chinensis HOM05D004008 ORTHO05D005383 7.0e-63 245.4 375 44.3
Glyma.11G015433 Glycine max HOM05D004008 ORTHO05D005383 7.8e-46 188.7 112 80.4
Psat5g278360 Pisum sativum HOM05D004008 ORTHO05D000002 2.5e-44 183.7 113 81.4
C08p23470 Brassica napus HOM05D004008 ORTHO05D032875 5.8e-41 172.6 199 54.3
BolC8t49976H Brassica oleracea HOM05D004008 ORTHO05D032875 5.8e-41 172.6 199 54.3
BcaC07g39332 Brassica carinata HOM05D004008 ORTHO05D032875 8.3e-40 168.7 189 55.6
Cre02.g113850 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D145669 2.6e-33 147.1 284 34.2
BcaC08g43816 Brassica carinata HOM05D004008 ORTHO05D013026 5.8e-33 146.0 104 67.3
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 2.2e-32 144.1 102 68.6
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 2.2e-32 144.1 102 68.6
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 1.4e-31 141.4 102 67.6
BolC9t56891H Brassica oleracea HOM05D004008 ORTHO05D013026 1.2e-30 138.3 106 64.2
C02p56520 Brassica napus HOM05D000109 ORTHO05D000210 4.6e-30 136.3 98 66.3
BcaC03g17816 Brassica carinata HOM05D003055 ORTHO05D013026 1.3e-29 134.8 107 61.7
C02p58390 Brassica napus HOM05D003055 ORTHO05D013026 5.6e-28 129.4 106 59.4
TPR.G13755 Trifolium pratense HOM05D004008 ORTHO05D410752 1.8e-18 97.8 67 77.6
BolC3t18065H Brassica oleracea HOM05D003055 ORTHO05D013026 8.9e-18 95.5 64 70.3
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 9.9e-17 92.0 49 91.8
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 2.7e-14 84.0 61 72.1
C05p24790 Brassica napus HOM05D003055 ORTHO05D013026 4.5e-09 66.6 38 73.7
BcaC01g02956 Brassica carinata HOM05D003055 ORTHO05D013026 4.9e-08 63.2 38 71.1


User provided reference genes

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