Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G9.13 Capsicum annuum HOM05D000725 ORTHO05D003141 1.5e-35 152.1 69 100.0
CAN.G15.3 Capsicum annuum HOM05D008574 ORTHO05D010611 2.9e-18 94.7 66 68.2
CAN.G1544.11 Capsicum annuum HOM05D000725 ORTHO05D003141 5.1e-15 84.0 56 69.6
Solyc01g109970.3 Solanum lycopersicum HOM05D000725 ORTHO05D003141 1.6e-13 79.0 45 82.2
Sopen01g052160 Solanum pennellii HOM05D000725 ORTHO05D003141 1.6e-13 79.0 45 82.2
PGSC0003DMG400030952 Solanum tuberosum HOM05D000725 ORTHO05D003141 1.6e-13 79.0 45 82.2
Peaxi162Scf00016g00426 Petunia axillaris HOM05D000725 ORTHO05D003141 3.1e-12 74.7 45 75.6
Nitab4.5_0012853g0020 Nicotiana tabacum HOM05D000725 ORTHO05D003141 4.0e-12 74.3 45 75.6
CAN.G410.12 Capsicum annuum HOM05D008574 ORTHO05D010611 9.0e-12 73.2 53 75.5
Nitab4.5_0003234g0070 Nicotiana tabacum HOM05D000725 ORTHO05D003141 5.8e-11 70.5 45 73.3
Hund06249 Selenicereus undatus HOM05D000725 ORTHO05D003141 7.6e-11 70.1 65 52.3
TPR.G1890 Trifolium pratense HOM05D000725 ORTHO05D003141 1.7e-10 68.9 69 46.4
Potri.009G120700 Populus trichocarpa HOM05D000725 ORTHO05D003141 2.9e-10 68.2 64 51.6
VMungo1127G1148 Vigna mungo HOM05D000725 ORTHO05D003141 2.9e-10 68.2 42 71.4
Medtr2g437480 Medicago truncatula HOM05D000725 ORTHO05D003141 4.9e-10 67.4 62 50.0
Rhsim05G0070700 Rhododendron simsii HOM05D000725 ORTHO05D003141 6.4e-10 67.0 62 51.6
Cpa.g.sc1026.2 Carica papaya HOM05D000725 ORTHO05D003141 8.4e-10 66.6 69 46.4
Lj1g0015165 Lotus japonicus HOM05D000725 ORTHO05D003141 8.4e-10 66.6 68 44.1
Lj5g0009315 Lotus japonicus HOM05D000725 ORTHO05D003141 8.4e-10 66.6 68 44.1
Lj5g0015696 Lotus japonicus HOM05D000725 ORTHO05D003141 8.4e-10 66.6 68 44.1
Lj6g0007539 Lotus japonicus HOM05D000725 ORTHO05D003141 8.4e-10 66.6 68 44.1
Glyma.13G201800 Glycine max HOM05D000725 ORTHO05D003141 1.1e-09 66.2 65 46.2
Rhsim11G0180800 Rhododendron simsii HOM05D000725 ORTHO05D003141 1.1e-09 66.2 63 47.6
TPR.G23932 Trifolium pratense HOM05D000725 ORTHO05D003141 1.1e-09 66.2 62 46.8
VMungo1127G0892 Vigna mungo HOM05D000725 ORTHO05D003141 1.1e-09 66.2 71 45.1
Cc02_g17200 Coffea canephora HOM05D000725 ORTHO05D003141 1.4e-09 65.9 62 53.2
Dinv42034 Davidia involucrata HOM05D000725 ORTHO05D003141 1.4e-09 65.9 65 44.6
Gohir.A12G042200 Gossypium hirsutum HOM05D000725 ORTHO05D003141 1.4e-09 65.9 63 49.2
Manes.11G082500 Manihot esculenta HOM05D000725 ORTHO05D003141 1.4e-09 65.9 54 57.4
Duzib248G0474 Durio zibethinus HOM05D000725 ORTHO05D003141 2.4e-09 65.1 62 46.8
Lj3g0000422 Lotus japonicus HOM05D000725 ORTHO05D003141 2.4e-09 65.1 63 47.6
Manes.04G086500 Manihot esculenta HOM05D000725 ORTHO05D003141 2.4e-09 65.1 64 50.0
Lj5g0003943 Lotus japonicus HOM05D000725 ORTHO05D003141 3.2e-09 64.7 63 46.0
Dinv23485 Davidia involucrata HOM05D000725 ORTHO05D003141 4.2e-09 64.3 64 43.8
Lj7A123T30 Lonicera japonica HOM05D000725 ORTHO05D003141 4.2e-09 64.3 71 43.7
Lj6g0012773 Lotus japonicus HOM05D000725 ORTHO05D003141 4.2e-09 64.3 65 44.6
Lalb_Chr19g0132271 Lupinus albus HOM05D000725 ORTHO05D003141 4.2e-09 64.3 44 61.4
CANSAT11G1287 Cannabis sativa HOM05D000725 ORTHO05D003141 5.4e-09 63.9 48 58.3
TWI75G0750 Tripterygium wilfordii HOM05D000725 ORTHO05D003141 5.4e-09 63.9 67 46.3
vmacro17455 Vaccinium macrocarpon HOM05D000725 ORTHO05D003141 5.4e-09 63.9 64 43.8
CiPaw.05G070200 Carya illinoinensis HOM05D000725 ORTHO05D003141 7.1e-09 63.5 64 48.4
AUR62011280 Chenopodium quinoa HOM05D000725 ORTHO05D003141 7.1e-09 63.5 45 64.4
AUR62016777 Chenopodium quinoa HOM05D000725 ORTHO05D003141 7.1e-09 63.5 45 64.4
CSS0026816 Camellia sinensis var. sinensis HOM05D000725 ORTHO05D003141 9.3e-09 63.2 64 45.3
CSS0026935 Camellia sinensis var. sinensis HOM05D000725 ORTHO05D003141 9.3e-09 63.2 64 45.3
Gohir.D13G030500 Gossypium hirsutum HOM05D000725 ORTHO05D003141 9.3e-09 63.2 60 46.7
Prupe.8G090000 Prunus persica HOM05D000725 ORTHO05D003141 9.3e-09 63.2 67 47.8
QL11p045293 Quercus lobata HOM05D000725 ORTHO05D003141 9.3e-09 63.2 64 46.9
Gohir.D12G030100 Gossypium hirsutum HOM05D000725 ORTHO05D003141 1.2e-08 62.8 63 47.6
Gorai.008G031000 Gossypium raimondii HOM05D000725 ORTHO05D003141 1.2e-08 62.8 63 47.6
Lalb_Chr01g0008001 Lupinus albus HOM05D000725 ORTHO05D003141 1.2e-08 62.8 44 61.4
QL11p045326 Quercus lobata HOM05D000725 ORTHO05D003141 1.2e-08 62.8 64 48.4
RcHm_v2.0_Chr6g0266061 Rosa chinensis HOM05D000725 ORTHO05D003141 1.6e-08 62.4 43 55.8
GSVIVG01024225001 Vitis vinifera HOM05D000725 ORTHO05D003141 1.6e-08 62.4 46 56.5
Actinidia02233 Actinidia chinensis HOM05D000725 ORTHO05D003141 2.1e-08 62.0 62 45.2
TWI79G0585 Tripterygium wilfordii HOM05D000725 ORTHO05D003141 2.1e-08 62.0 68 45.6
Gohir.A13G032200 Gossypium hirsutum HOM05D000725 ORTHO05D003141 2.7e-08 61.6 60 45.0
Gorai.013G034700 Gossypium raimondii HOM05D000725 ORTHO05D003141 2.7e-08 61.6 60 45.0
THA.LOC104819623 Tarenaya hassleriana HOM05D000725 ORTHO05D003141 2.7e-08 61.6 60 45.0
DCAR_028963 Daucus carota HOM05D000725 ORTHO05D003141 3.5e-08 61.2 63 46.0
FAN15G1535 Fragaria x ananassa HOM05D000725 ORTHO05D003141 3.5e-08 61.2 43 53.5
FAN27G2965 Fragaria x ananassa HOM05D000725 ORTHO05D003141 3.5e-08 61.2 43 53.5
Phvul.011G210600 Phaseolus vulgaris HOM05D000725 ORTHO05D003141 3.5e-08 61.2 73 42.5
Psat7g126840 Pisum sativum HOM05D000725 ORTHO05D003141 3.5e-08 61.2 57 49.1
EL10Ac9g21686 Beta vulgaris HOM05D000725 ORTHO05D003141 4.6e-08 60.8 58 51.7
Haze_02322 Corylus avellana HOM05D000725 ORTHO05D003141 4.6e-08 60.8 41 68.3
FvH4_2g09760 Fragaria vesca HOM05D000725 ORTHO05D003141 4.6e-08 60.8 43 51.2
FAN24G2419 Fragaria x ananassa HOM05D000725 ORTHO05D003141 4.6e-08 60.8 43 51.2
Lj5A193T102 Lonicera japonica HOM05D000725 ORTHO05D003141 4.6e-08 60.8 62 45.2
PSO210G6882 Papaver somniferum HOM05D000725 ORTHO05D003141 4.6e-08 60.8 33 69.7
PSO832G3117 Papaver somniferum HOM05D000725 ORTHO05D003141 4.6e-08 60.8 33 69.7
Potri.004G159000 Populus trichocarpa HOM05D000725 ORTHO05D003141 4.6e-08 60.8 44 65.9
Thecc.02G079900 Theobroma cacao HOM05D000725 ORTHO05D003141 4.6e-08 60.8 62 46.8
vmacro02076 Vaccinium macrocarpon HOM05D000725 ORTHO05D003141 4.6e-08 60.8 48 54.2
Atru.chr5.3086 Acer truncatum HOM05D000725 ORTHO05D003141 6.0e-08 60.5 61 49.2
CANSAT11G1508 Cannabis sativa HOM05D000725 ORTHO05D003141 6.0e-08 60.5 68 48.5
arahy.Tifrunner.gnm1.ann1.XRRC6E Arachis hypogaea HOM05D000725 ORTHO05D003141 7.9e-08 60.1 67 37.3
CiPaw.06G132300 Carya illinoinensis HOM05D000725 ORTHO05D003141 7.9e-08 60.1 42 59.5
Sc14g0002030 Simmondsia chinensis HOM05D000725 ORTHO05D003141 7.9e-08 60.1 64 42.2
GSVIVG01024512001 Vitis vinifera HOM05D000725 ORTHO05D003141 7.9e-08 60.1 61 45.9
Aqoxy5G01532 Aquilegia oxysepala HOM05D000725 ORTHO05D003141 1.0e-07 59.7 37 67.6
arahy.Tifrunner.gnm1.ann1.S1J40P Arachis hypogaea HOM05D000725 ORTHO05D003141 1.0e-07 59.7 67 37.3
HanXRQChr03g0069371 Helianthus annuus HOM05D000725 ORTHO05D003141 1.0e-07 59.7 69 43.5
TAR625G0592 Trochodendron aralioides HOM05D000725 ORTHO05D003141 1.0e-07 59.7 33 69.7
Actinidia27877 Actinidia chinensis HOM05D000725 ORTHO05D003141 1.3e-07 59.3 62 43.5
Phvul.011G210800 Phaseolus vulgaris HOM05D000725 ORTHO05D003141 1.3e-07 59.3 62 41.9
MELO3C023332.2 Cucumis melo HOM05D000725 ORTHO05D003141 1.8e-07 58.9 43 60.5
DCAR_001556 Daucus carota HOM05D000725 ORTHO05D003141 1.8e-07 58.9 46 56.5
Eucgr.G01701 Eucalyptus grandis HOM05D000725 ORTHO05D003141 1.8e-07 58.9 66 43.9
Hund06399 Selenicereus undatus HOM05D000725 ORTHO05D003141 2.3e-07 58.5 64 42.2
SGA_v2.0_scaffold58G20498 Striga asiatica HOM05D000725 ORTHO05D003141 2.3e-07 58.5 69 43.5
Ah.01g009440 Amaranthus hybridus HOM05D000725 ORTHO05D003141 3.0e-07 58.2 34 64.7
Glyma.12G236100 Glycine max HOM05D000725 ORTHO05D003141 3.0e-07 58.2 68 42.6
Aqoxy5G01538 Aquilegia oxysepala HOM05D000725 ORTHO05D003141 3.9e-07 57.8 30 70.0
AL4G10630 Arabidopsis lyrata HOM05D000725 ORTHO05D003141 3.9e-07 57.8 67 41.8
ClCG11G004110 Citrullus lanatus HOM05D000725 ORTHO05D003141 3.9e-07 57.8 43 60.5
Ciclev10027795m.g Citrus clementina HOM05D000725 ORTHO05D003141 3.9e-07 57.8 64 50.0
Oeu041616.1 Olea europaea HOM05D000725 ORTHO05D003141 3.9e-07 57.8 63 44.4
TAR381G1393 Trochodendron aralioides HOM05D000725 ORTHO05D003141 3.9e-07 57.8 38 60.5
RcHm_v2.0_Chr1g0330471 Rosa chinensis HOM05D000725 ORTHO05D003141 5.1e-07 57.4 71 40.8
Sed0003616 Sechium edule HOM05D000725 ORTHO05D003141 5.1e-07 57.4 43 60.5
Sed0009304 Sechium edule HOM05D000725 ORTHO05D003141 5.1e-07 57.4 43 60.5
ECA240G2411 Erigeron canadensis HOM05D000725 ORTHO05D003141 6.7e-07 57.0 64 43.8
HanXRQChr03g0069421 Helianthus annuus HOM05D000725 ORTHO05D003141 6.7e-07 57.0 30 70.0
QL11p045305 Quercus lobata HOM05D000725 ORTHO05D003141 6.7e-07 57.0 64 42.2
SHI05568 Sapria himalayana HOM05D000725 ORTHO05D003141 6.7e-07 57.0 32 71.9
Ah.01g019080 Amaranthus hybridus HOM05D000725 ORTHO05D003141 8.7e-07 56.6 57 43.9
CsaV3_2G015070 Cucumis sativus L. HOM05D000725 ORTHO05D003141 8.7e-07 56.6 40 62.5
ECA234G2709 Erigeron canadensis HOM05D000725 ORTHO05D003141 8.7e-07 56.6 68 39.7
AUR62013100 Chenopodium quinoa HOM05D000725 ORTHO05D003141 1.1e-06 56.2 37 62.2
MD10G1068100 Malus domestica HOM05D000725 ORTHO05D003141 1.1e-06 56.2 30 76.7
CDE06G1623 Ceratophyllum demersum HOM05D000725 ORTHO05D003141 1.5e-06 55.8 61 42.6
HanXRQChr12g0374341 Helianthus annuus HOM05D000725 ORTHO05D003141 1.5e-06 55.8 40 57.5
Medtr8g037345 Medicago truncatula HOM05D000725 ORTHO05D003141 1.5e-06 55.8 65 43.1
RcHm_v2.0_Chr6g0266081 Rosa chinensis HOM05D000725 ORTHO05D003141 1.5e-06 55.8 48 50.0
GSVIVG01023832001 Vitis vinifera HOM05D000725 ORTHO05D003141 1.5e-06 55.8 43 48.8
CDE03G0261 Ceratophyllum demersum HOM05D000725 ORTHO05D003141 1.9e-06 55.5 63 42.9
Ca_23901_v3 Cicer arietinum L. HOM05D000725 ORTHO05D003141 1.9e-06 55.5 29 72.4
MSTRG.16829 Avicennia marina HOM05D000725 ORTHO05D003141 2.5e-06 55.1 65 44.6
ECA234G1026 Erigeron canadensis HOM05D000725 ORTHO05D003141 2.5e-06 55.1 64 39.1
Prupe.8G089900 Prunus persica HOM05D000725 ORTHO05D003141 2.5e-06 55.1 58 44.8
CAN.G79.92 Capsicum annuum HOM05D008574 ORTHO05D010611 3.3e-06 54.7 25 88.0
PGR042G3366 Punica granatum HOM05D000725 ORTHO05D003141 3.3e-06 54.7 26 80.8
AT2G21450 Arabidopsis thaliana HOM05D000725 ORTHO05D003141 4.3e-06 54.3 61 42.6
BcaC01g03023 Brassica carinata HOM05D000394 ORTHO05D003141 4.3e-06 54.3 54 44.4
C03p57010 Brassica napus HOM05D000394 ORTHO05D003141 4.3e-06 54.3 54 44.4
BolC3t17979H Brassica oleracea HOM05D000394 ORTHO05D003141 4.3e-06 54.3 54 44.4
CAN.G151.31 Capsicum annuum HOM05D008574 ORTHO05D010611 4.3e-06 54.3 34 70.6
AUR62010106 Chenopodium quinoa HOM05D000725 ORTHO05D003141 4.3e-06 54.3 37 59.5
PSO700G0205 Papaver somniferum HOM05D000725 ORTHO05D003141 4.3e-06 54.3 38 57.9
PSO731G0040 Papaver somniferum HOM05D000725 ORTHO05D003141 4.3e-06 54.3 38 57.9
A03p45780 Brassica napus HOM05D000394 ORTHO05D003141 5.6e-06 53.9 54 40.7
BraA03t13708Z Brassica rapa HOM05D000394 ORTHO05D003141 5.6e-06 53.9 54 40.7
DCAR_003655 Daucus carota HOM05D000725 ORTHO05D003141 5.6e-06 53.9 34 64.7
MBI11_g32386_MAGBIO Magnolia biondii HOM05D000725 ORTHO05D003141 5.6e-06 53.9 62 45.2
PSO063G2790 Papaver somniferum HOM05D000725 ORTHO05D003141 5.6e-06 53.9 32 62.5
PSO782G2318 Papaver somniferum HOM05D000725 ORTHO05D003141 5.6e-06 53.9 32 62.5
Carub.0004s0050 Capsella rubella HOM05D000725 ORTHO05D003141 7.4e-06 53.5 67 37.3
COL.COLO4_15200 Corchorus olitorius HOM05D000725 ORTHO05D003141 7.4e-06 53.5 65 41.5
Cc00_g19470 Coffea canephora HOM05D000725 ORTHO05D003141 9.6e-06 53.1 45 53.3
COL.COLO4_25997 Corchorus olitorius HOM05D000725 ORTHO05D003141 9.6e-06 53.1 35 57.1


User provided reference genes

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