Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G84.19 Capsicum annuum HOM05D004270 ORTHO05D005037 3.0e-165 585.1 291 100.0
PGSC0003DMG400025362 Solanum tuberosum HOM05D004270 ORTHO05D005037 3.2e-159 565.1 291 96.2
Solyc11g072690.2 Solanum lycopersicum HOM05D004270 ORTHO05D005037 2.1e-158 562.4 291 95.2
Sopen11g030360 Solanum pennellii HOM05D004270 ORTHO05D005037 2.1e-158 562.4 291 95.2
Migut.H01658 Erythranthe guttata HOM05D004270 ORTHO05D005037 9.9e-153 543.5 289 91.3
Actinidia07391 Actinidia chinensis HOM05D004270 ORTHO05D005037 9.2e-151 537.0 291 89.3
TAR636G3127 Trochodendron aralioides HOM05D004270 ORTHO05D005037 1.2e-150 536.6 291 89.3
GSVIVG01036737001 Vitis vinifera HOM05D004270 ORTHO05D005037 1.0e-149 533.5 291 88.3
HanXRQChr14g0449761 Helianthus annuus HOM05D004270 ORTHO05D005037 1.3e-149 533.1 291 89.0
CSS0035574 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 6.6e-149 530.8 291 89.0
Thhalv10008359m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 6.6e-149 530.8 290 88.6
Thecc.06G006500 Theobroma cacao HOM05D004270 ORTHO05D005037 6.6e-149 530.8 291 88.0
VMungo1383G2841 Vigna mungo HOM05D004270 ORTHO05D005037 6.6e-149 530.8 291 89.0
Hma1.2p1_0151F.1_g067120 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 8.7e-149 530.4 291 89.0
Phvul.008G049000 Phaseolus vulgaris HOM05D004270 ORTHO05D005037 8.7e-149 530.4 288 89.9
CiPaw.14G018200 Carya illinoinensis HOM05D004270 ORTHO05D005037 1.1e-148 530.0 291 88.0
Nn6g34391 Nelumbo nucifera HOM05D004270 ORTHO05D005037 1.9e-148 529.3 288 88.5
SGA_v2.0_scaffold49G18204 Striga asiatica HOM05D004270 ORTHO05D005037 2.5e-148 528.9 296 88.2
Atru.chr1.67 Acer truncatum HOM05D004270 ORTHO05D005037 4.3e-148 528.1 291 88.3
AT1G79500 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 4.3e-148 528.1 291 88.0
arahy.Tifrunner.gnm1.ann1.D5XWDC Arachis hypogaea HOM05D004270 ORTHO05D005037 5.6e-148 527.7 291 88.0
CARHR073160 Cardamine hirsuta HOM05D004270 ORTHO05D005037 5.6e-148 527.7 291 88.7
Thhalv10018956m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 5.6e-148 527.7 291 88.0
Lj1g0019682 Lotus japonicus HOM05D004270 ORTHO05D005037 7.3e-148 527.3 291 88.3
Sp5g34553 Schrenkiella parvula HOM05D004270 ORTHO05D005037 1.2e-147 526.6 291 87.6
Cc11_g02350 Coffea canephora HOM05D004270 ORTHO05D005037 1.6e-147 526.2 291 88.0
DCAR_016846 Daucus carota HOM05D004270 ORTHO05D005037 1.6e-147 526.2 291 88.0
arahy.Tifrunner.gnm1.ann1.PIH8R2 Arachis hypogaea HOM05D004270 ORTHO05D005037 2.1e-147 525.8 291 87.6
ECA238G3087 Erigeron canadensis HOM05D004270 ORTHO05D005037 2.1e-147 525.8 292 88.4
MSTRG.13089 Avicennia marina HOM05D004270 ORTHO05D005037 4.7e-147 524.6 291 87.3
Potri.002G061900 Populus trichocarpa HOM05D004270 ORTHO05D005037 4.7e-147 524.6 291 88.0
AL2G40110 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 6.2e-147 524.2 291 87.3
Ca_08047_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 1.1e-146 523.5 291 86.9
Ca_08053_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 1.1e-146 523.5 291 86.9
Carub.0002s2636 Capsella rubella HOM05D004270 ORTHO05D005037 1.4e-146 523.1 291 87.3
Psat3g099560 Pisum sativum HOM05D004270 ORTHO05D005037 1.4e-146 523.1 291 86.9
Lsat_1_v5_gn_2_88340 Lactuca sativa HOM05D004270 ORTHO05D005037 1.8e-146 522.7 291 86.9
Medtr7g081220 Medicago truncatula HOM05D004270 ORTHO05D005037 1.8e-146 522.7 291 87.3
Sc15g0006060 Simmondsia chinensis HOM05D004270 ORTHO05D005037 1.8e-146 522.7 291 85.9
vmacro23274 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 2.4e-146 522.3 319 81.2
BcaC03g15900 Brassica carinata HOM05D004270 ORTHO05D005037 4.0e-146 521.5 291 86.9
MSTRG.16093 Avicennia marina HOM05D004270 ORTHO05D005037 5.2e-146 521.2 288 86.8
Duzib268G0296 Durio zibethinus HOM05D004270 ORTHO05D005037 5.2e-146 521.2 291 86.3
Manes.03G080050 Manihot esculenta HOM05D004270 ORTHO05D005037 5.2e-146 521.2 291 87.6
Potri.005G199100 Populus trichocarpa HOM05D004270 ORTHO05D005037 6.9e-146 520.8 291 86.9
Ciclev10005458m.g Citrus clementina HOM05D004270 ORTHO05D005037 9.0e-146 520.4 291 86.3
Glyma.09G244900 Glycine max HOM05D004270 ORTHO05D005037 9.0e-146 520.4 289 87.5
BcaB02g07218 Brassica carinata HOM05D004270 ORTHO05D005037 1.2e-145 520.0 291 86.9
TWI12G0564 Tripterygium wilfordii HOM05D004270 ORTHO05D005037 1.5e-145 519.6 291 87.6
Sed0021681 Sechium edule HOM05D004270 ORTHO05D005037 2.0e-145 519.2 288 87.8
CARHR016810 Cardamine hirsuta HOM05D004270 ORTHO05D005037 3.4e-145 518.5 289 87.2
AUR62009294 Chenopodium quinoa HOM05D004270 ORTHO05D005037 5.8e-145 517.7 291 86.3
THA.LOC104812380 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 7.6e-145 517.3 288 85.8
TPR.G21772 Trifolium pratense HOM05D004270 ORTHO05D005037 9.9e-145 516.9 291 86.6
EL10Ac2g04029 Beta vulgaris HOM05D004270 ORTHO05D005037 1.3e-144 516.5 291 85.6
ClCG03G001640 Citrullus lanatus HOM05D004270 ORTHO05D005037 1.3e-144 516.5 288 86.5
Duzib187G1348 Durio zibethinus HOM05D004270 ORTHO05D005037 1.3e-144 516.5 291 86.6
Os12g0210800 Oryza sativa ssp. japonica HOM05D004270 ORTHO05D005037 1.3e-144 516.5 289 86.5
HPP92_024995 Vanilla planifolia HOM05D004270 ORTHO05D005037 1.3e-144 516.5 291 85.9
CsaV3_1G034040 Cucumis sativus L. HOM05D004270 ORTHO05D005037 1.7e-144 516.2 288 86.8
Gorai.004G095400 Gossypium raimondii HOM05D004270 ORTHO05D005037 2.9e-144 515.4 288 86.5
PSO675G6017 Papaver somniferum HOM05D004270 ORTHO05D005037 2.9e-144 515.4 290 86.9
MELO3C020651.2 Cucumis melo HOM05D004270 ORTHO05D005037 3.8e-144 515.0 288 86.8
PSO782G4107 Papaver somniferum HOM05D004270 ORTHO05D005037 3.8e-144 515.0 290 86.6
Aqoxy7G03543 Aquilegia oxysepala HOM05D004270 ORTHO05D005037 6.4e-144 514.2 288 85.8
AUR62041708 Chenopodium quinoa HOM05D004270 ORTHO05D005037 1.1e-143 513.5 291 85.6
AUR62043393 Chenopodium quinoa HOM05D004270 ORTHO05D005037 1.1e-143 513.5 291 85.6
Gohir.D08G090400 Gossypium hirsutum HOM05D004270 ORTHO05D005037 1.1e-143 513.5 288 86.1
Prupe.4G129800 Prunus persica HOM05D004270 ORTHO05D005037 1.4e-143 513.1 291 85.2
RcHm_v2.0_Chr5g0023881 Rosa chinensis HOM05D004270 ORTHO05D005037 1.4e-143 513.1 291 84.9
CANSAT78G1193 Cannabis sativa HOM05D004270 ORTHO05D005037 1.9e-143 512.7 289 85.5
FAN25G1815 Fragaria x ananassa HOM05D004270 ORTHO05D005037 1.9e-143 512.7 291 84.9
SGA_v2.0_scaffold239G44014 Striga asiatica HOM05D004270 ORTHO05D005037 1.9e-143 512.7 276 89.5
FvH4_3g14500 Fragaria vesca HOM05D004270 ORTHO05D005037 2.4e-143 512.3 291 84.9
arahy.Tifrunner.gnm1.ann1.WIVF2E Arachis hypogaea HOM05D004270 ORTHO05D005037 3.2e-143 511.9 298 83.2
PSO732G0600 Papaver somniferum HOM05D004270 ORTHO05D005037 3.2e-143 511.9 290 86.2
BraA02t07287Z Brassica rapa HOM05D004270 ORTHO05D005037 4.2e-143 511.5 292 86.3
MD10G1213400 Malus domestica HOM05D004270 ORTHO05D005037 5.4e-143 511.1 291 84.9
AT1G16340 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 7.1e-143 510.8 290 85.5
Ah.15g099350 Amaranthus hybridus HOM05D004270 ORTHO05D005037 9.3e-143 510.4 288 84.7
Ah.15g099360 Amaranthus hybridus HOM05D004270 ORTHO05D005037 9.3e-143 510.4 288 84.7
TPR.G29107 Trifolium pratense HOM05D004270 ORTHO05D005037 9.3e-143 510.4 291 86.3
Sabra05G0151600 Salix brachista HOM05D004270 ORTHO05D005037 1.2e-142 510.0 312 81.1
PGR119G1968 Punica granatum HOM05D004270 ORTHO05D005037 1.6e-142 509.6 286 85.7
C02p36680 Brassica napus HOM05D004270 ORTHO05D005037 2.7e-142 508.8 292 85.6
A02p22860 Brassica napus HOM05D004270 ORTHO05D005037 4.6e-142 508.1 295 85.1
THA.LOC104813606 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 6.0e-142 507.7 287 85.4
Gohir.A08G080300 Gossypium hirsutum HOM05D004270 ORTHO05D005037 7.8e-142 507.3 288 85.1
Nitab4.5_0004015g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 2.3e-141 505.8 291 88.3
Carub.0001s1608 Capsella rubella HOM05D004270 ORTHO05D005037 3.0e-141 505.4 290 86.2
AL1G28460 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 8.7e-141 503.8 290 83.8
BraA07t30356Z Brassica rapa HOM05D004270 ORTHO05D005037 2.5e-140 502.3 291 85.2
A07p27110 Brassica napus HOM05D004270 ORTHO05D005037 3.3e-140 501.9 291 84.9
vmacro11688 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 5.6e-140 501.1 363 71.3
BolC6t38147H Brassica oleracea HOM05D004270 ORTHO05D005037 7.3e-140 500.7 291 84.9
BolC2t09663H Brassica oleracea HOM05D004270 ORTHO05D005037 9.6e-140 500.4 296 84.5
COL.COLO4_12345 Corchorus olitorius HOM05D004270 ORTHO05D005037 2.8e-139 498.8 273 89.0
Peaxi162Scf00616g00418 Petunia axillaris HOM05D004270 ORTHO05D005037 1.1e-138 496.9 291 86.9
MBI07_g44658_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 2.4e-138 495.7 290 84.8
unitig_744.g24505 Utricularia gibba HOM05D004270 ORTHO05D005037 2.4e-138 495.7 286 85.0
Lj7A89G46 Lonicera japonica HOM05D004270 ORTHO05D005037 2.0e-137 492.7 278 87.8
MD05G1236400 Malus domestica HOM05D004270 ORTHO05D005037 4.5e-137 491.5 291 82.5
QL04p092971 Quercus lobata HOM05D004270 ORTHO05D005037 4.5e-137 491.5 271 87.8
SalBow8G2534 Salvia bowleyana HOM05D004270 ORTHO05D005037 5.8e-137 491.1 295 83.7
SalBow8G3927 Salvia bowleyana HOM05D004270 ORTHO05D005037 5.8e-137 491.1 295 83.7
Haze_02880 Corylus avellana HOM05D004270 ORTHO05D005037 1.7e-136 489.6 271 86.7
BcaC08g45353 Brassica carinata HOM05D004270 ORTHO05D005037 3.8e-136 488.4 271 87.8
QL04p091607 Quercus lobata HOM05D004270 ORTHO05D005037 3.8e-136 488.4 271 87.5
Rhsim03G0145800 Rhododendron simsii HOM05D004270 ORTHO05D005037 3.8e-136 488.4 312 79.2
Glyma.18G248300 Glycine max HOM05D004270 ORTHO05D005037 4.9e-136 488.0 269 88.1
Lalb_Chr19g0126381 Lupinus albus HOM05D004270 ORTHO05D005037 6.4e-136 487.6 280 86.4
Rhsim06G0243500 Rhododendron simsii HOM05D004270 ORTHO05D005037 4.2e-135 485.0 300 81.0
FAN16G1654 Fragaria x ananassa HOM05D004270 ORTHO05D005037 1.3e-133 479.9 271 85.6
Ah.15g099340 Amaranthus hybridus HOM05D004270 ORTHO05D005037 2.3e-133 479.2 273 83.9
FAN11G3302 Fragaria x ananassa HOM05D004270 ORTHO05D005037 2.3e-133 479.2 288 81.2
PGR119G0090 Punica granatum HOM05D004270 ORTHO05D005037 2.3e-133 479.2 286 82.2
Zm00001eb138330 Zea mays HOM05D004270 ORTHO05D005037 2.3e-133 479.2 285 82.5
BcaB05g25203 Brassica carinata HOM05D004270 ORTHO05D005037 3.9e-133 478.4 293 82.3
Lj7A89G45 Lonicera japonica HOM05D004270 ORTHO05D005037 1.5e-132 476.5 273 86.4
CSS0009623 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 3.3e-132 475.3 259 89.2
Aa31LG4G1520 Aethionema arabicum HOM05D004270 ORTHO05D005037 3.7e-131 471.9 271 86.7
C06p29850 Brassica napus HOM05D004270 ORTHO05D005037 1.4e-130 469.9 271 86.0
ATR0743G256 Amborella trichopoda HOM05D004270 ORTHO05D005037 6.9e-130 467.6 253 90.1
BcaC08g45351 Brassica carinata HOM05D004270 ORTHO05D005037 6.9e-130 467.6 284 81.3
ATR0561G061 Amborella trichopoda HOM05D004270 ORTHO05D005037 2.0e-129 466.1 253 89.7
Oeu026000.2 Olea europaea HOM05D004270 ORTHO05D005037 4.2e-127 458.4 323 73.4
Duzib187G1262 Durio zibethinus HOM05D004270 ORTHO05D005037 6.0e-126 454.5 258 86.0
Hma1.2p1_2351F.1_g320490 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 7.9e-126 454.1 315 74.9
SMO347G0325 Selaginella moellendorffii HOM05D004270 ORTHO05D005037 1.3e-125 453.4 271 80.1
Eucgr.K01360 Eucalyptus grandis HOM05D004270 ORTHO05D005037 3.9e-125 451.8 247 88.3
Pp3c22_7420 Physcomitrium patens HOM05D004270 ORTHO05D005037 3.3e-124 448.7 280 76.4
Lj4A247G30 Lonicera japonica HOM05D004270 ORTHO05D005037 1.6e-123 446.4 242 90.5
AagrBONN_evm.TU.Sc2ySwM_344.2891 Anthoceros agrestis HOM05D004270 ORTHO05D005037 6.9e-122 441.0 284 72.9
DCAR_013716 Daucus carota HOM05D004270 ORTHO05D005037 1.2e-121 440.3 237 90.7
FAN21G0266 Fragaria x ananassa HOM05D004270 ORTHO05D005037 3.2e-119 432.2 254 82.7
PSO832G2042 Papaver somniferum HOM05D004270 ORTHO05D005037 6.0e-118 427.9 290 76.2
vmacro08704 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 1.5e-113 413.3 394 58.4
Mapoly0024s0056 Marchantia polymorpha HOM05D004270 ORTHO05D005037 1.0e-112 410.6 287 70.4
CiPaw.13G024200 Carya illinoinensis HOM05D004270 ORTHO05D005037 1.7e-107 393.3 220 85.9
RcHm_v2.0_Chr6g0274781 Rosa chinensis HOM05D004270 ORTHO05D005037 5.3e-106 388.3 274 72.6
Nitab4.5_0006659g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 1.3e-104 383.6 198 96.0
CDE05G0560 Ceratophyllum demersum HOM05D004270 ORTHO05D005037 6.5e-96 354.8 192 85.4
arahy.Tifrunner.gnm1.ann1.S8QNVY Arachis hypogaea HOM05D004270 ORTHO05D005037 2.7e-94 349.4 275 67.3
Cpa.g.sc32.74 Carica papaya HOM05D004270 ORTHO05D005037 9.1e-90 334.3 184 86.4
arahy.Tifrunner.gnm1.ann1.IC77ZE Arachis hypogaea HOM05D004270 ORTHO05D005037 1.6e-86 323.6 271 64.6
QL04p093439 Quercus lobata HOM05D004270 ORTHO05D005037 4.0e-85 318.9 288 60.4
SHI21470 Sapria himalayana HOM05D004270 ORTHO05D005037 3.1e-82 309.3 278 59.0
CBR_g41577 Chara braunii HOM05D000019 ORTHO05D000048 3.4e-76 289.3 172 78.5
Cfa020378 Carpinus fangiana HOM05D004270 ORTHO05D005037 5.4e-74 282.0 253 61.7
Haze_26612 Corylus avellana HOM05D004270 ORTHO05D005037 2.0e-68 263.5 261 49.8
arahy.Tifrunner.gnm1.ann1.06J840 Arachis hypogaea HOM05D004270 ORTHO05D005037 2.6e-68 263.1 194 71.6
arahy.Tifrunner.gnm1.ann1.IZH1PK Arachis hypogaea HOM05D004270 ORTHO05D005037 1.6e-49 200.7 193 59.6
arahy.Tifrunner.gnm1.ann1.BQF4LJ Arachis hypogaea HOM05D004270 ORTHO05D005037 1.7e-48 197.2 133 75.2
arahy.Tifrunner.gnm1.ann1.C4QR2M Arachis hypogaea HOM05D004270 ORTHO05D005037 1.7e-48 197.2 133 75.2
QL04p092150 Quercus lobata HOM05D004270 ORTHO05D005037 2.6e-36 156.8 142 60.6
MBI10_g05703_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 7.3e-31 138.7 131 60.3
Lsat_1_v5_gn_3_92901 Lactuca sativa HOM05D004270 ORTHO05D005037 5.1e-24 115.9 64 78.1
SEGI_39104 Sequoiadendron giganteum HOM05D004270 ORTHO05D005037 1.1e-23 114.8 91 62.6
vmacro07967 Vaccinium macrocarpon HOM05D004270 ORTHO05D007590 2.8e-22 110.2 66 74.2
arahy.Tifrunner.gnm1.ann1.J4JBIL Arachis hypogaea HOM05D004270 ORTHO05D005037 1.1e-21 108.2 88 64.8
arahy.Tifrunner.gnm1.ann1.SB2A23 Arachis hypogaea HOM05D004270 ORTHO05D005037 1.1e-21 108.2 88 64.8
Lsat_1_v5_gn_2_10621 Lactuca sativa HOM05D004270 ORTHO05D005037 1.3e-19 101.3 64 76.6
SEGI_07848 Sequoiadendron giganteum HOM05D004270 ORTHO05D005037 5.6e-15 85.9 51 70.6
arahy.Tifrunner.gnm1.ann1.8HXD5I Arachis hypogaea HOM05D004270 ORTHO05D005037 1.6e-14 84.3 46 87.0
FAN12G0414 Fragaria x ananassa HOM05D000835 ORTHO05D035555 6.5e-11 72.4 90 52.2
FAN12G0605 Fragaria x ananassa HOM05D000835 ORTHO05D035555 6.5e-11 72.4 90 52.2
RcHm_v2.0_Chr2g0110821 Rosa chinensis HOM05D004270 ORTHO05D005037 6.5e-11 72.4 45 73.3
TAR636G1752 Trochodendron aralioides HOM05D004270 ORTHO05D005037 4.6e-09 66.2 39 84.6
arahy.Tifrunner.gnm1.ann1.FF7QMU Arachis hypogaea HOM05D004270 ORTHO05D005037 3.9e-08 63.2 45 64.4
Dinv19578 Davidia involucrata HOM05D006464 ORTHO05D007923 2.8e-06 57.0 34 82.4


User provided reference genes

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