Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G771.36 Capsicum annuum HOM05D004007 ORTHO05D005127 5.3e-232 807.4 422 100.0
Solyc06g083790.3 Solanum lycopersicum HOM05D004007 ORTHO05D005127 7.4e-226 786.9 422 96.9
Sopen06g035200 Solanum pennellii HOM05D004007 ORTHO05D005127 7.4e-226 786.9 422 96.9
PGSC0003DMG400020149 Solanum tuberosum HOM05D004007 ORTHO05D005127 7.4e-226 786.9 422 96.9
Nitab4.5_0000917g0090 Nicotiana tabacum HOM05D004007 ORTHO05D005127 2.0e-223 778.9 439 93.4
Peaxi162Scf00013g01239 Petunia axillaris HOM05D004007 ORTHO05D005127 8.2e-217 756.9 421 93.8
Peaxi162Scf00415g00213 Petunia axillaris HOM05D004007 ORTHO05D005127 1.9e-213 745.7 429 90.0
TWI18G0319 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 4.0e-211 738.0 418 89.7
TWI12G1332 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 5.7e-210 734.2 420 88.3
Nn3g19723 Nelumbo nucifera HOM05D004007 ORTHO05D005127 1.3e-209 733.0 421 89.1
GSVIVG01028373001 Vitis vinifera HOM05D004007 ORTHO05D005127 2.2e-209 732.3 419 88.1
Aqoxy2G03706 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 2.8e-209 731.9 420 89.0
Manes.13G037000 Manihot esculenta HOM05D004007 ORTHO05D005127 2.8e-209 731.9 420 88.8
Thecc.01G253900 Theobroma cacao HOM05D004007 ORTHO05D005127 2.8e-209 731.9 418 89.5
RcHm_v2.0_Chr6g0287371 Rosa chinensis HOM05D004007 ORTHO05D005127 6.3e-209 730.7 421 87.9
TAR636G3081 Trochodendron aralioides HOM05D004007 ORTHO05D005127 6.3e-209 730.7 421 87.9
Actinidia09529 Actinidia chinensis HOM05D004007 ORTHO05D005127 1.1e-208 729.9 419 88.3
CiPaw.03G267900 Carya illinoinensis HOM05D004007 ORTHO05D005127 1.4e-208 729.6 419 87.8
Gorai.001G179900 Gossypium raimondii HOM05D004007 ORTHO05D005127 1.4e-208 729.6 418 88.0
CiPaw.04G188500 Carya illinoinensis HOM05D004007 ORTHO05D005127 2.4e-208 728.8 419 88.5
Gohir.A07G150500 Gossypium hirsutum HOM05D004007 ORTHO05D005127 2.4e-208 728.8 418 87.8
Atru.chr5.1778 Acer truncatum HOM05D004007 ORTHO05D005127 3.1e-208 728.4 421 87.4
DCAR_018503 Daucus carota HOM05D004007 ORTHO05D005127 4.1e-208 728.0 421 87.6
Duzib138G0603 Durio zibethinus HOM05D004007 ORTHO05D005127 7.0e-208 727.2 418 88.3
Gohir.D07G157000 Gossypium hirsutum HOM05D004007 ORTHO05D005127 7.0e-208 727.2 418 88.0
COL.COLO4_34373 Corchorus olitorius HOM05D004007 ORTHO05D005127 9.1e-208 726.9 418 88.3
Lj1A71T65 Lonicera japonica HOM05D004007 ORTHO05D005127 9.1e-208 726.9 421 87.4
Potri.014G195700 Populus trichocarpa HOM05D004007 ORTHO05D005127 1.6e-207 726.1 420 87.9
Duzib211G0126 Durio zibethinus HOM05D004007 ORTHO05D005127 2.7e-207 725.3 418 88.0
Gohir.D07G156900 Gossypium hirsutum HOM05D004007 ORTHO05D005127 2.7e-207 725.3 427 86.9
Oeu035732.1 Olea europaea HOM05D004007 ORTHO05D005127 3.5e-207 724.9 421 88.1
Cc01_g18040 Coffea canephora HOM05D004007 ORTHO05D005127 4.5e-207 724.5 419 88.1
Nitab4.5_0001919g0010 Nicotiana tabacum HOM05D004007 ORTHO05D005127 4.5e-207 724.5 422 91.2
FvH4_2g20990 Fragaria vesca HOM05D004007 ORTHO05D005127 7.7e-207 723.8 421 86.7
Hma1.2p1_0273F.1_g109400 Hydrangea macrophylla HOM05D004007 ORTHO05D005127 1.0e-206 723.4 419 88.8
Lsat_1_v5_gn_8_92300 Lactuca sativa HOM05D004007 ORTHO05D005127 1.0e-206 723.4 420 88.6
THA.LOC104820071 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 2.3e-206 722.2 418 87.3
FAN15G2391 Fragaria x ananassa HOM05D004007 ORTHO05D005127 2.9e-206 721.8 421 86.2
Gohir.A07G150600 Gossypium hirsutum HOM05D004007 ORTHO05D005127 5.0e-206 721.1 418 87.1
Psat6g062440 Pisum sativum HOM05D004007 ORTHO05D005127 5.0e-206 721.1 419 86.6
MD10G1179600 Malus domestica HOM05D004007 ORTHO05D005127 6.5e-206 720.7 420 87.9
QL09p040238 Quercus lobata HOM05D004007 ORTHO05D005127 6.5e-206 720.7 419 86.6
ClCG06G001530 Citrullus lanatus HOM05D004007 ORTHO05D005127 8.6e-206 720.3 419 87.6
Ciclev10020300m.g Citrus clementina HOM05D004007 ORTHO05D005127 8.6e-206 720.3 421 86.2
HanXRQChr04g0111281 Helianthus annuus HOM05D004007 ORTHO05D005127 8.6e-206 720.3 420 88.3
MD05G1193100 Malus domestica HOM05D004007 ORTHO05D005127 8.6e-206 720.3 420 87.4
Prupe.8G219400 Prunus persica HOM05D004007 ORTHO05D005127 8.6e-206 720.3 420 86.9
CANSAT01G1551 Cannabis sativa HOM05D004007 ORTHO05D005127 1.1e-205 719.9 419 86.9
MELO3C022382.2 Cucumis melo HOM05D004007 ORTHO05D005127 1.1e-205 719.9 419 87.6
Gorai.001G180000 Gossypium raimondii HOM05D004007 ORTHO05D005127 1.1e-205 719.9 418 87.3
Potri.002G259600 Populus trichocarpa HOM05D004007 ORTHO05D005127 1.1e-205 719.9 420 87.4
arahy.Tifrunner.gnm1.ann1.ZVPG3A Arachis hypogaea HOM05D004007 ORTHO05D005127 1.5e-205 719.5 419 86.6
Sabra14G0145900 Salix brachista HOM05D004007 ORTHO05D005127 1.9e-205 719.2 420 87.4
MSTRG.18338 Avicennia marina HOM05D004007 ORTHO05D005127 2.5e-205 718.8 421 86.2
Thhalv10001996m.g Eutrema salsugineum HOM05D004007 ORTHO05D005127 2.5e-205 718.8 421 87.4
Ca_09660_v3 Cicer arietinum L. HOM05D004007 ORTHO05D005127 3.2e-205 718.4 419 86.9
Migut.N02218 Erythranthe guttata HOM05D004007 ORTHO05D005127 4.2e-205 718.0 421 86.9
Sed0019801 Sechium edule HOM05D004007 ORTHO05D005127 4.2e-205 718.0 419 87.4
CsaV3_6G007490 Cucumis sativus L. HOM05D004007 ORTHO05D005127 5.5e-205 717.6 419 87.4
Lj5g0009759 Lotus japonicus HOM05D004007 ORTHO05D005127 9.5e-205 716.8 420 86.9
HanXRQChr10g0280751 Helianthus annuus HOM05D004007 ORTHO05D005127 1.6e-204 716.1 420 87.4
Carub.0003s3481 Capsella rubella HOM05D004007 ORTHO05D005127 2.1e-204 715.7 420 86.4
Manes.12G034800 Manihot esculenta HOM05D004007 ORTHO05D005127 2.1e-204 715.7 420 86.7
AT2G20420 Arabidopsis thaliana HOM05D004007 ORTHO05D005127 2.8e-204 715.3 420 86.7
PSO832G3765 Papaver somniferum HOM05D004007 ORTHO05D005127 2.8e-204 715.3 421 86.9
SGA_v2.0_scaffold138G35202 Striga asiatica HOM05D004007 ORTHO05D005127 2.8e-204 715.3 421 85.7
AL3G53400 Arabidopsis lyrata HOM05D004007 ORTHO05D005127 4.7e-204 714.5 420 86.7
CSS0014309 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 4.7e-204 714.5 420 86.9
Lalb_Chr06g0170611 Lupinus albus HOM05D004007 ORTHO05D005127 6.1e-204 714.1 419 85.9
Os02g0621700 Oryza sativa ssp. japonica HOM05D004007 ORTHO05D005127 6.1e-204 714.1 419 85.4
BcaB07g31587 Brassica carinata HOM05D004007 ORTHO05D005127 8.0e-204 713.8 420 86.4
FAN24G2352 Fragaria x ananassa HOM05D004007 ORTHO05D005127 8.0e-204 713.8 436 83.7
Rhsim01G0261700 Rhododendron simsii HOM05D004007 ORTHO05D005127 1.0e-203 713.4 438 84.9
PSO210G2341 Papaver somniferum HOM05D004007 ORTHO05D005127 1.4e-203 713.0 421 86.7
MSTRG.21476 Avicennia marina HOM05D004007 ORTHO05D005127 1.8e-203 712.6 421 85.7
TPR.G5690 Trifolium pratense HOM05D004007 ORTHO05D005127 2.3e-203 712.2 419 86.4
Medtr1g069645 Medicago truncatula HOM05D004007 ORTHO05D005127 4.0e-203 711.4 419 85.7
Lalb_Chr02g0152651 Lupinus albus HOM05D004007 ORTHO05D005127 6.8e-203 710.7 419 85.7
Sp3g33640 Schrenkiella parvula HOM05D004007 ORTHO05D005127 6.8e-203 710.7 420 85.7
vmacro02694 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 8.8e-203 710.3 419 86.9
BraA07t27822Z Brassica rapa HOM05D004007 ORTHO05D005127 1.2e-202 709.9 420 86.2
Glyma.13G125400 Glycine max HOM05D004007 ORTHO05D005127 1.2e-202 709.9 419 85.4
SalBow6G2566 Salvia bowleyana HOM05D004007 ORTHO05D005127 1.2e-202 709.9 422 85.8
C07p00650 Brassica napus HOM05D004007 ORTHO05D005127 1.5e-202 709.5 420 86.2
BcaB03g16833 Brassica carinata HOM05D004007 ORTHO05D005127 2.6e-202 708.8 420 86.2
unitig_22.g5450 Utricularia gibba HOM05D004007 ORTHO05D005127 2.6e-202 708.8 419 85.7
Zm00001eb247500 Zea mays HOM05D004007 ORTHO05D005127 2.6e-202 708.8 419 85.2
C09p16710 Brassica napus HOM05D004007 ORTHO05D005127 3.4e-202 708.4 420 86.2
BolC9t54570H Brassica oleracea HOM05D004007 ORTHO05D005127 3.4e-202 708.4 420 86.2
BraA09t37039Z Brassica rapa HOM05D004007 ORTHO05D005127 3.4e-202 708.4 420 86.2
A07p00310 Brassica napus HOM05D004007 ORTHO05D005127 4.4e-202 708.0 420 86.0
CDE05G0056 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 4.4e-202 708.0 419 85.9
FAN27G2583 Fragaria x ananassa HOM05D004007 ORTHO05D005127 4.4e-202 708.0 430 84.7
Sabra02G0197500 Salix brachista HOM05D004007 ORTHO05D005127 4.4e-202 708.0 451 81.8
BcaC04g22683 Brassica carinata HOM05D004007 ORTHO05D005127 1.7e-201 706.1 420 86.0
HPP92_008549 Vanilla planifolia HOM05D004007 ORTHO05D005127 1.7e-201 706.1 421 85.0
BcaC06g36729 Brassica carinata HOM05D004007 ORTHO05D005127 2.2e-201 705.7 420 85.7
BolC7t40509H Brassica oleracea HOM05D004007 ORTHO05D005127 2.2e-201 705.7 420 85.7
PGR031G0590 Punica granatum HOM05D004007 ORTHO05D005127 2.2e-201 705.7 421 85.3
Zm00001eb185030 Zea mays HOM05D004007 ORTHO05D005127 2.2e-201 705.7 419 84.7
A09p13930 Brassica napus HOM05D004007 ORTHO05D005127 2.8e-201 705.3 420 85.7
Aa31LG8G17390 Aethionema arabicum HOM05D004007 ORTHO05D005127 3.7e-201 704.9 420 85.2
BcaB08g34906 Brassica carinata HOM05D004007 ORTHO05D005127 3.7e-201 704.9 418 85.6
Glyma.10G039000 Glycine max HOM05D004007 ORTHO05D005127 3.7e-201 704.9 419 85.0
Phvul.007G190800 Phaseolus vulgaris HOM05D004007 ORTHO05D005127 3.7e-201 704.9 419 84.5
VMungo0720G0501 Vigna mungo HOM05D004007 ORTHO05D005127 3.7e-201 704.9 419 84.2
Haze_24666 Corylus avellana HOM05D004007 ORTHO05D005127 6.3e-201 704.1 471 78.6
Haze_24671 Corylus avellana HOM05D004007 ORTHO05D005127 6.3e-201 704.1 471 78.6
EL10Ac6g15333 Beta vulgaris HOM05D004007 ORTHO05D005127 1.1e-200 703.4 419 85.2
THA.LOC104804042 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 1.4e-200 703.0 419 85.0
Migut.D00454 Erythranthe guttata HOM05D004007 ORTHO05D005127 1.8e-200 702.6 421 85.0
Hund04389 Selenicereus undatus HOM05D004007 ORTHO05D005127 1.8e-200 702.6 419 84.7
CDE02G1941 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 1.2e-199 699.9 419 85.7
Nitab4.5_0003295g0070 Nicotiana tabacum HOM05D004007 ORTHO05D005127 1.2e-199 699.9 424 86.3
Eucgr.H00143 Eucalyptus grandis HOM05D004007 ORTHO05D005127 5.9e-199 697.6 422 84.6
Lsat_1_v5_gn_9_10741 Lactuca sativa HOM05D004007 ORTHO05D005127 1.0e-198 696.8 420 86.4
Rhsim13G0038000 Rhododendron simsii HOM05D004007 ORTHO05D005127 1.0e-198 696.8 448 81.9
AUR62017860 Chenopodium quinoa HOM05D004007 ORTHO05D005127 1.3e-198 696.4 421 85.3
SEGI_32315 Sequoiadendron giganteum HOM05D004007 ORTHO05D005127 2.6e-194 682.2 424 81.8
SalBow4G2771 Salvia bowleyana HOM05D004007 ORTHO05D005127 3.2e-192 675.2 421 82.7
arahy.Tifrunner.gnm1.ann1.TE5CG8 Arachis hypogaea HOM05D004007 ORTHO05D005127 1.0e-190 670.2 502 72.1
FAN20G1240 Fragaria x ananassa HOM05D004007 ORTHO05D005127 2.3e-190 669.1 471 76.2
CARHR110970 Cardamine hirsuta HOM05D004007 ORTHO05D005127 5.0e-190 667.9 388 87.9
Dinv16374 Davidia involucrata HOM05D004007 ORTHO05D005127 3.6e-188 661.8 375 89.6
AUR62003546 Chenopodium quinoa HOM05D004007 ORTHO05D005127 1.4e-184 649.8 385 86.2
MBI07_g32831_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 7.0e-184 647.5 416 81.5
Sc16g0004880 Simmondsia chinensis HOM05D004007 ORTHO05D005127 6.6e-182 641.0 378 85.2
ATR0736G150 Amborella trichopoda HOM05D004007 ORTHO05D005127 4.3e-181 638.3 373 85.8
Nn1g02862 Nelumbo nucifera HOM05D004007 ORTHO05D005127 7.3e-181 637.5 363 88.4
Mapoly0005s0186 Marchantia polymorpha HOM05D004007 ORTHO05D005127 1.4e-179 633.3 398 79.6
SMO201G0240 Selaginella moellendorffii HOM05D004007 ORTHO05D005127 4.1e-176 621.7 406 77.1
Pp3c20_5640 Physcomitrium patens HOM05D004007 ORTHO05D005127 4.3e-173 611.7 416 75.0
Oeu055792.1 Olea europaea HOM05D004007 ORTHO05D005127 7.3e-173 610.9 419 76.8
CBR_g26489 Chara braunii HOM05D004007 ORTHO05D005127 1.2e-167 593.6 400 73.8
Dinv34652 Davidia involucrata HOM05D004007 ORTHO05D005127 1.4e-163 580.1 334 87.1
MBI10_g27626_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.5e-162 576.6 408 74.8
Actinidia25803 Actinidia chinensis HOM05D004007 ORTHO05D005127 2.8e-156 555.8 309 91.3
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 2.7e-151 539.3 396 68.2
Cre17.g703700 Chlamydomonas reinhardtii HOM05D004007 ORTHO05D005127 2.3e-150 536.2 423 66.0
MCO01G516 Micromonas commoda HOM05D004007 ORTHO05D005127 7.6e-146 521.2 399 66.7
ECA236G0129 Erigeron canadensis HOM05D004007 ORTHO05D005127 4.9e-137 491.9 278 90.6
vmacro14809 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 5.5e-136 488.4 458 61.6
MBI07_g31081_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.6e-132 476.9 284 83.1
Ah.03g147720 Amaranthus hybridus HOM05D004007 ORTHO05D005127 5.1e-126 455.3 260 88.8
QL09p040223 Quercus lobata HOM05D004007 ORTHO05D005127 1.1e-123 447.6 392 64.8
MBI10_g13790_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.5e-117 427.2 241 90.5
Cpa.g.sc165.35 Carica papaya HOM05D004007 ORTHO05D005127 3.1e-107 392.9 236 81.4
TAR365G0842 Trochodendron aralioides HOM05D004007 ORTHO05D005127 1.9e-104 383.6 225 84.4
Lalb_Chr21g0314021 Lupinus albus HOM05D004007 ORTHO05D005127 4.2e-96 355.9 205 86.8
MBI10_g27857_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 3.6e-95 352.8 244 73.0
Sed0026875 Sechium edule HOM05D004007 ORTHO05D005127 7.0e-83 312.0 288 60.4
Haze_27401 Corylus avellana HOM05D004007 ORTHO05D005127 1.7e-73 280.8 293 50.5
Psat3g074720 Pisum sativum HOM05D004007 ORTHO05D005127 4.9e-68 262.7 207 66.2
Psat7g041920 Pisum sativum HOM05D004007 ORTHO05D005127 3.0e-65 253.4 147 83.7
Haze_26747 Corylus avellana HOM05D004007 ORTHO05D005127 2.2e-60 237.3 189 61.9
Zm00001eb277730 Zea mays HOM05D004007 ORTHO05D005127 5.4e-51 206.1 134 73.9
Actinidia30141 Actinidia chinensis HOM05D004007 ORTHO05D002753 2.3e-49 200.7 194 62.4
TAR365G0472 Trochodendron aralioides HOM05D004007 ORTHO05D022233 6.9e-46 189.1 112 91.1
Zm00001eb283930 Zea mays HOM05D004007 ORTHO05D005127 4.2e-43 179.9 119 70.6
Aqoxy7G03385 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 1.8e-38 164.5 150 64.0
Cfa021785 Carpinus fangiana HOM05D001982 ORTHO05D003938 6.9e-38 162.5 288 36.1
Lj2C1145T6 Lonicera japonica HOM05D004007 ORTHO05D022233 2.6e-37 160.6 157 61.8
Lj2C1146T3 Lonicera japonica HOM05D004007 ORTHO05D022233 3.4e-37 160.2 157 61.1
Dinv08643 Davidia involucrata HOM05D004007 ORTHO05D005127 1.3e-36 158.3 108 75.0
CSS0040446 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 1.6e-26 124.8 82 73.2
Haze_26746 Corylus avellana HOM05D004007 ORTHO05D005127 2.3e-25 120.9 178 34.3
CiPaw.03G130300 Carya illinoinensis HOM05D004007 ORTHO05D005127 3.1e-22 110.5 69 79.7
Lj2A1145G31 Lonicera japonica HOM05D004007 ORTHO05D005127 4.0e-22 110.2 149 46.3
HanXRQChr10g0293611 Helianthus annuus HOM05D004007 ORTHO05D219627 1.1e-14 85.5 100 51.0
FvH4_2g21030 Fragaria vesca HOM05D004007 ORTHO05D022233 4.1e-14 83.6 51 84.3
Cpa.g.sc165.34 Carica papaya HOM05D004007 ORTHO05D022233 1.5e-13 81.6 48 91.7
Lalb_Chr21g0314011 Lupinus albus HOM05D004007 ORTHO05D022233 3.8e-12 77.0 40 97.5
Haze_26311 Corylus avellana HOM05D002944 ORTHO05D003377 5.0e-12 76.6 372 28.2
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 6.1e-10 69.7 113 38.9
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 1.4e-09 68.6 111 38.7
TAR636G1356 Trochodendron aralioides HOM05D002574 ORTHO05D002797 4.3e-08 63.5 63 50.8
Glyma.18G157500 Glycine max HOM05D004007 ORTHO05D005127 7.4e-08 62.8 37 75.7
Ciclev10031633m.g Citrus clementina HOM05D002061 ORTHO05D002849 4.8e-07 60.1 405 23.5
ECA234G3088 Erigeron canadensis HOM05D002061 ORTHO05D002849 1.4e-06 58.5 366 23.2
ClCG08G017860 Citrullus lanatus HOM05D002061 ORTHO05D005707 5.3e-06 56.6 366 23.8
HanXRQChr12g0384281 Helianthus annuus HOM05D002061 ORTHO05D002849 5.3e-06 56.6 415 23.1
SEGI_05260 Sequoiadendron giganteum HOM05D002061 ORTHO05D002849 5.3e-06 56.6 407 23.3
Cfa022239 Carpinus fangiana HOM05D002061 ORTHO05D121718 6.9e-06 56.2 319 23.8
MELO3C010675.2 Cucumis melo HOM05D002061 ORTHO05D002849 6.9e-06 56.2 366 23.8
CsaV3_2G024770 Cucumis sativus L. HOM05D002061 ORTHO05D002849 6.9e-06 56.2 366 23.8
Sed0025966 Sechium edule HOM05D002061 ORTHO05D005707 6.9e-06 56.2 361 24.1
Aqoxy3G01074 Aquilegia oxysepala HOM05D002061 ORTHO05D002849 9.1e-06 55.8 411 23.8


User provided reference genes

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