Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G765.14 Capsicum annuum HOM05D003044 ORTHO05D001869 9.9e-262 906.7 649 100.0
CAN.G1433.1 Capsicum annuum HOM05D003044 ORTHO05D001869 2.3e-165 586.6 772 69.0
Sopen05g033570 Solanum pennellii HOM05D003044 ORTHO05D001869 1.0e-120 438.3 833 57.1
PGSC0003DMG400023499 Solanum tuberosum HOM05D003044 ORTHO05D001869 7.4e-108 395.6 705 61.8
Nitab4.5_0005247g0010 Nicotiana tabacum HOM05D003044 ORTHO05D001869 2.5e-95 354.0 814 53.3
Nitab4.5_0000687g0150 Nicotiana tabacum HOM05D003044 ORTHO05D001869 3.2e-95 353.6 814 52.9
Peaxi162Scf00519g00028 Petunia axillaris HOM05D003044 ORTHO05D001869 1.5e-60 238.4 730 41.6
Nitab4.5_0001781g0070 Nicotiana tabacum HOM05D003044 ORTHO05D001869 7.3e-47 193.0 676 47.6
Nitab4.5_0011494g0020 Nicotiana tabacum HOM05D003044 ORTHO05D001869 8.1e-46 189.5 722 41.1
CAN.G143.56 Capsicum annuum HOM05D003044 ORTHO05D001869 9.9e-44 182.6 736 41.3
Solyc05g055110.4 Solanum lycopersicum HOM05D003044 ORTHO05D001869 4.1e-42 177.2 206 60.2
Solyc05g055130.1 Solanum lycopersicum HOM05D003044 ORTHO05D001869 9.6e-31 139.4 97 77.3
Peaxi162Scf00120g00721 Petunia axillaris HOM05D003044 ORTHO05D001869 1.3e-30 139.0 726 38.4
MSTRG.27548 Avicennia marina HOM05D003044 ORTHO05D001869 1.0e-24 119.4 180 50.6
Cc02_g09260 Coffea canephora HOM05D003044 ORTHO05D001869 2.1e-22 111.7 146 54.1
Ciclev10014057m.g Citrus clementina HOM05D003044 ORTHO05D001869 2.8e-22 111.3 200 43.5
Gorai.012G022800 Gossypium raimondii HOM05D003044 ORTHO05D001869 3.1e-21 107.8 192 44.8
Sopen11g002290 Solanum pennellii HOM05D003044 ORTHO05D001869 3.1e-21 107.8 710 42.8
Lj2A36T50 Lonicera japonica HOM05D003044 ORTHO05D001869 5.3e-21 107.1 206 43.7
Solyc11g006390.2 Solanum lycopersicum HOM05D003044 ORTHO05D001869 5.3e-21 107.1 707 42.0
Migut.F01554 Erythranthe guttata HOM05D003044 ORTHO05D001869 6.9e-21 106.7 147 52.4
QL04p048819 Quercus lobata HOM05D003044 ORTHO05D001869 6.9e-21 106.7 152 51.3
QL04p049165 Quercus lobata HOM05D003044 ORTHO05D001869 6.9e-21 106.7 152 51.3
Psat6g171360 Pisum sativum HOM05D003044 ORTHO05D001869 1.5e-20 105.5 190 43.2
TWI63G0823 Tripterygium wilfordii HOM05D003044 ORTHO05D001869 7.6e-20 103.2 207 42.5
Migut.F00829 Erythranthe guttata HOM05D003044 ORTHO05D001869 1.7e-19 102.1 189 42.9
GSVIVG01034601001 Vitis vinifera HOM05D003044 ORTHO05D001869 1.7e-19 102.1 198 43.4
Sabra10G0191200 Salix brachista HOM05D003044 ORTHO05D001869 4.9e-19 100.5 209 42.1
Gohir.D04G019000 Gossypium hirsutum HOM05D003044 ORTHO05D001869 8.4e-19 99.8 192 42.7
Thecc.10G119700 Theobroma cacao HOM05D003044 ORTHO05D001869 1.1e-18 99.4 199 41.2
Ca_18140_v3 Cicer arietinum L. HOM05D003044 ORTHO05D001869 2.4e-18 98.2 182 43.4
TAR636G1345 Trochodendron aralioides HOM05D003044 ORTHO05D001869 2.4e-18 98.2 192 41.7
Oeu015285.1 Olea europaea HOM05D003044 ORTHO05D001869 3.2e-18 97.8 649 39.9
ClCG08G008450 Citrullus lanatus HOM05D003044 ORTHO05D001869 5.5e-18 97.1 214 42.5
Glyma.20G195200 Glycine max HOM05D003044 ORTHO05D001869 5.5e-18 97.1 189 43.4
MELO3C019915.2 Cucumis melo HOM05D003044 ORTHO05D001869 7.1e-18 96.7 211 41.2
Gorai.012G022500 Gossypium raimondii HOM05D003044 ORTHO05D001869 7.1e-18 96.7 193 41.5
Manes.07G084000 Manihot esculenta HOM05D003044 ORTHO05D001869 7.1e-18 96.7 219 38.4
Oeu020482.1 Olea europaea HOM05D003044 ORTHO05D001869 7.1e-18 96.7 164 49.4
Lalb_Chr19g0128991 Lupinus albus HOM05D003044 ORTHO05D001869 1.6e-17 95.5 203 41.4
Manes.10G059500 Manihot esculenta HOM05D003044 ORTHO05D001869 1.6e-17 95.5 220 39.1
Cpa.g.sc33.124 Carica papaya HOM05D003044 ORTHO05D001869 2.1e-17 95.1 199 39.2
Hma1.2p1_0098F.1_g048320 Hydrangea macrophylla HOM05D003044 ORTHO05D001869 2.1e-17 95.1 118 51.7
CsaV3_6G004440 Cucumis sativus L. HOM05D003044 ORTHO05D001869 3.5e-17 94.4 144 50.7
Gohir.D04G018900 Gossypium hirsutum HOM05D003044 ORTHO05D001869 3.5e-17 94.4 190 42.6
Gohir.A05G396000 Gossypium hirsutum HOM05D003044 ORTHO05D001869 4.6e-17 94.0 194 41.8
VMungo0720G1731 Vigna mungo HOM05D003044 ORTHO05D001869 4.6e-17 94.0 141 49.6
Phvul.007G233800 Phaseolus vulgaris HOM05D003044 ORTHO05D001869 6.0e-17 93.6 137 50.4
vmacro10333 Vaccinium macrocarpon HOM05D003044 ORTHO05D001869 6.0e-17 93.6 184 45.1
Dinv03806 Davidia involucrata HOM05D003044 ORTHO05D001869 7.9e-17 93.2 181 44.2
Hma1.2p1_0098F.1_g048290 Hydrangea macrophylla HOM05D003044 ORTHO05D001869 1.0e-16 92.8 174 44.3
Lj3A920T29 Lonicera japonica HOM05D003044 ORTHO05D001869 1.3e-16 92.4 207 41.1
Lalb_Chr02g0150891 Lupinus albus HOM05D003044 ORTHO05D001869 1.3e-16 92.4 184 42.9
Potri.008G015350 Populus trichocarpa HOM05D003044 ORTHO05D001869 3.0e-16 91.3 207 39.6
Sabra08G0009300 Salix brachista HOM05D003044 ORTHO05D001869 3.0e-16 91.3 211 39.8
CiPaw.14G036200 Carya illinoinensis HOM05D003044 ORTHO05D001869 3.9e-16 90.9 155 46.5
Gorai.012G022400 Gossypium raimondii HOM05D003044 ORTHO05D001869 3.9e-16 90.9 190 42.1
Lalb_Chr01g0010681 Lupinus albus HOM05D003044 ORTHO05D001869 5.1e-16 90.5 181 44.2
Atru.chr12.1090 Acer truncatum HOM05D003044 ORTHO05D001869 8.7e-16 89.7 209 41.1
Aqoxy2G00627 Aquilegia oxysepala HOM05D003044 ORTHO05D001869 8.7e-16 89.7 162 45.1
CANSAT56G3871 Cannabis sativa HOM05D003044 ORTHO05D001869 1.1e-15 89.4 224 37.1
ECA233G5261 Erigeron canadensis HOM05D003044 ORTHO05D001869 1.9e-15 88.6 198 42.4
Lsat_1_v5_gn_2_106321 Lactuca sativa HOM05D003044 ORTHO05D001869 1.9e-15 88.6 153 45.8
Gohir.A05G396100 Gossypium hirsutum HOM05D003044 ORTHO05D001869 2.5e-15 88.2 160 46.9
PGR044G1498 Punica granatum HOM05D003044 ORTHO05D001869 2.5e-15 88.2 135 50.4
Duzib106G0590 Durio zibethinus HOM05D003044 ORTHO05D001869 4.3e-15 87.4 194 41.2
Ca_10422_v3 Cicer arietinum L. HOM05D003044 ORTHO05D001869 7.4e-15 86.7 212 39.2
Rhsim03G0094000 Rhododendron simsii HOM05D003044 ORTHO05D001869 7.4e-15 86.7 193 44.0
CiPaw.13G045500 Carya illinoinensis HOM05D003044 ORTHO05D001869 9.6e-15 86.3 165 43.6
Lsat_1_v5_gn_8_21821 Lactuca sativa HOM05D003044 ORTHO05D001869 2.1e-14 85.1 195 41.5
Lj6g0024518 Lotus japonicus HOM05D003044 ORTHO05D001869 2.8e-14 84.7 153 47.7
Haze_03430 Corylus avellana HOM05D003044 ORTHO05D001869 3.7e-14 84.3 139 48.9
Oeu025606.1 Olea europaea HOM05D003044 ORTHO05D001869 6.2e-14 83.6 180 43.9
PSO339G5639 Papaver somniferum HOM05D003044 ORTHO05D001869 6.2e-14 83.6 153 43.8
Rhsim09G0140200 Rhododendron simsii HOM05D003044 ORTHO05D001869 1.1e-13 82.8 180 42.8
THA.LOC104816476 Tarenaya hassleriana HOM05D003044 ORTHO05D001869 1.1e-13 82.8 227 36.6
Cfa010501 Carpinus fangiana HOM05D003044 ORTHO05D001869 1.8e-13 82.0 136 49.3
Duzib114G0797 Durio zibethinus HOM05D003044 ORTHO05D001869 1.8e-13 82.0 192 40.1
SGA_v2.0_scaffold90G27707 Striga asiatica HOM05D003044 ORTHO05D001869 1.8e-13 82.0 177 44.6
HanXRQChr02g0049311 Helianthus annuus HOM05D003044 ORTHO05D001869 2.4e-13 81.6 174 42.0
PGR044G1324 Punica granatum HOM05D003044 ORTHO05D001869 2.4e-13 81.6 139 47.5
CDE07G1072 Ceratophyllum demersum HOM05D003044 ORTHO05D001869 5.3e-13 80.5 153 45.1
Glyma.10G120200 Glycine max HOM05D003044 ORTHO05D001869 5.3e-13 80.5 165 43.0
Potri.008G014800 Populus trichocarpa HOM05D003044 ORTHO05D001869 6.9e-13 80.1 211 36.5
Duzib128G0650 Durio zibethinus HOM05D003044 ORTHO05D001869 9.0e-13 79.7 194 39.7
Gohir.D04G019080 Gossypium hirsutum HOM05D003044 ORTHO05D001869 9.0e-13 79.7 161 41.6
Psat6g049400 Pisum sativum HOM05D003044 ORTHO05D001869 9.0e-13 79.7 231 36.4
Phvul.007G136500 Phaseolus vulgaris HOM05D003044 ORTHO05D001869 1.2e-12 79.3 195 40.5
TWI15G1087 Tripterygium wilfordii HOM05D003044 ORTHO05D001869 1.2e-12 79.3 205 37.1
AUR62033063 Chenopodium quinoa HOM05D003044 ORTHO05D001869 2.0e-12 78.6 156 41.0
DCAR_018987 Daucus carota HOM05D003044 ORTHO05D001869 2.0e-12 78.6 213 37.1
Lalb_Chr21g0312741 Lupinus albus HOM05D003044 ORTHO05D001869 2.6e-12 78.2 171 40.4
Nn6g34615 Nelumbo nucifera HOM05D003044 ORTHO05D001869 2.6e-12 78.2 132 47.7
HanXRQChr08g0217351 Helianthus annuus HOM05D003044 ORTHO05D001869 3.4e-12 77.8 162 43.2
Gohir.D04G019060 Gossypium hirsutum HOM05D003044 ORTHO05D001869 5.8e-12 77.0 100 51.0
Gorai.012G022700 Gossypium raimondii HOM05D003044 ORTHO05D001869 5.8e-12 77.0 100 51.0
PSO384G0573 Papaver somniferum HOM05D003044 ORTHO05D001869 7.6e-12 76.6 229 37.6
VMungo0720G0604 Vigna mungo HOM05D003044 ORTHO05D001869 7.6e-12 76.6 152 41.4
Lj5g0009221 Lotus japonicus HOM05D003044 ORTHO05D001869 1.0e-11 76.3 201 37.8
Hund22391 Selenicereus undatus HOM05D003044 ORTHO05D001869 1.7e-11 75.5 160 43.1
EL10Ac8g19444 Beta vulgaris HOM05D003044 ORTHO05D001869 2.2e-11 75.1 148 43.9
MBI05_g36784_MAGBIO Magnolia biondii HOM05D003044 ORTHO05D001869 2.2e-11 75.1 136 45.6
CDE04G3330 Ceratophyllum demersum HOM05D003044 ORTHO05D001869 3.8e-11 74.3 202 36.1
Sed0023754 Sechium edule HOM05D003044 ORTHO05D001869 4.9e-11 73.9 188 38.3
Potri.010G244700 Populus trichocarpa HOM05D003044 ORTHO05D001869 1.1e-10 72.8 202 35.6
Ah.09g231710 Amaranthus hybridus HOM05D003044 ORTHO05D001869 1.4e-10 72.4 161 45.3
Medtr1g090340 Medicago truncatula HOM05D003044 ORTHO05D001869 1.4e-10 72.4 198 34.8
HanXRQChr11g0322921 Helianthus annuus HOM05D003044 ORTHO05D001869 1.9e-10 72.0 176 37.5
SGA_v2.0_scaffold13G06427 Striga asiatica HOM05D003044 ORTHO05D001869 2.5e-10 71.6 173 38.7
THA.LOC104823155 Tarenaya hassleriana HOM05D003044 ORTHO05D001869 2.5e-10 71.6 131 45.8
HanXRQChr07g0194411 Helianthus annuus HOM05D003044 ORTHO05D001869 4.2e-10 70.9 162 38.9
AUR62042206 Chenopodium quinoa HOM05D003044 ORTHO05D001869 5.5e-10 70.5 151 39.7
Gohir.D04G019020 Gossypium hirsutum HOM05D003044 ORTHO05D001869 7.1e-10 70.1 94 48.9
Medtr1g040610 Medicago truncatula HOM05D003044 ORTHO05D001869 7.1e-10 70.1 218 34.4
vmacro07277 Vaccinium macrocarpon HOM05D003044 ORTHO05D001869 1.6e-09 68.9 157 38.9
RcHm_v2.0_Chr1g0332241 Rosa chinensis HOM05D003044 ORTHO05D001869 2.7e-09 68.2 178 41.0
Ah.14g085720 Amaranthus hybridus HOM05D003044 ORTHO05D001869 3.5e-09 67.8 203 39.4
BolC1t05369H Brassica oleracea HOM05D003044 ORTHO05D001869 3.5e-09 67.8 211 35.5
Psat4g227200 Pisum sativum HOM05D003044 ORTHO05D001869 6.0e-09 67.0 98 44.9
Actinidia31115 Actinidia chinensis HOM05D003044 ORTHO05D001869 7.9e-09 66.6 129 45.0
Aa31LG3G3500 Aethionema arabicum HOM05D003044 ORTHO05D001869 1.0e-08 66.2 225 35.1
CARHR085230 Cardamine hirsuta HOM05D003044 ORTHO05D001869 1.0e-08 66.2 147 44.2
arahy.Tifrunner.gnm1.ann1.JKR5UJ Arachis hypogaea HOM05D003044 ORTHO05D001869 1.3e-08 65.9 210 35.2
arahy.Tifrunner.gnm1.ann1.Y6HWEI Arachis hypogaea HOM05D003044 ORTHO05D001869 1.3e-08 65.9 210 35.2
HanXRQChr07g0201481 Helianthus annuus HOM05D003044 ORTHO05D001869 3.9e-08 64.3 155 40.6
MD02G1257800 Malus domestica HOM05D003044 ORTHO05D001869 3.9e-08 64.3 156 39.7
Prupe.2G074800 Prunus persica HOM05D003044 ORTHO05D001869 3.9e-08 64.3 152 41.4
HPP92_019542 Vanilla planifolia HOM05D003044 ORTHO05D001869 5.1e-08 63.9 147 40.1
Dinv04420 Davidia involucrata HOM05D003044 ORTHO05D001869 6.7e-08 63.5 706 30.2
Hma1.2p1_0153F.1_g067840 Hydrangea macrophylla HOM05D003044 ORTHO05D001869 6.7e-08 63.5 129 46.5
FvH4_7g05430 Fragaria vesca HOM05D003044 ORTHO05D001869 1.9e-07 62.0 181 39.2
SHI21256 Sapria himalayana HOM05D003044 ORTHO05D001869 1.9e-07 62.0 115 44.3
AT3G10650 Arabidopsis thaliana HOM05D003044 ORTHO05D001869 4.3e-07 60.8 201 34.8
FAN01G1587 Fragaria x ananassa HOM05D003044 ORTHO05D001869 4.3e-07 60.8 182 37.9
Eucgr.J00304 Eucalyptus grandis HOM05D003044 ORTHO05D001869 5.7e-07 60.5 108 48.1
Os03g0788300 Oryza sativa ssp. japonica HOM05D003044 ORTHO05D001869 5.7e-07 60.5 153 38.6
HPP92_018630 Vanilla planifolia HOM05D003044 ORTHO05D001869 7.4e-07 60.1 106 41.5
FAN10G1738 Fragaria x ananassa HOM05D003044 ORTHO05D001869 9.7e-07 59.7 172 37.8
unitig_46.g18649 Utricularia gibba HOM05D003044 ORTHO05D001869 9.7e-07 59.7 187 36.4
CAN.G765.12 Capsicum annuum HOM05D003044 ORTHO05D001869 1.3e-06 59.3 56 71.4
FAN03G0021 Fragaria x ananassa HOM05D003044 ORTHO05D001869 1.3e-06 59.3 182 37.4
FAN10G0351 Fragaria x ananassa HOM05D003044 ORTHO05D001869 1.3e-06 59.3 182 37.4
vmacro22754 Vaccinium macrocarpon HOM05D003044 ORTHO05D001869 3.7e-06 57.8 169 40.8
Sp3g08960 Schrenkiella parvula HOM05D003044 ORTHO05D001869 8.2e-06 56.6 222 35.1


User provided reference genes

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