Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G765.13 Capsicum annuum HOM05D003044 ORTHO05D001869 1.5e-87 326.2 171 100.0
CAN.G1433.1 Capsicum annuum HOM05D003044 ORTHO05D001869 3.7e-51 205.3 128 87.5
Sopen05g033570 Solanum pennellii HOM05D003044 ORTHO05D001869 2.9e-43 179.1 129 76.7
Nitab4.5_0005247g0010 Nicotiana tabacum HOM05D003044 ORTHO05D001869 6.2e-38 161.4 158 63.3
Nitab4.5_0000687g0150 Nicotiana tabacum HOM05D003044 ORTHO05D001869 2.0e-36 156.4 158 62.0
Peaxi162Scf00519g00028 Petunia axillaris HOM05D003044 ORTHO05D001869 1.1e-34 150.6 159 59.7
Nitab4.5_0011494g0020 Nicotiana tabacum HOM05D003044 ORTHO05D001869 6.2e-30 134.8 162 50.6
Peaxi162Scf00120g00721 Petunia axillaris HOM05D003044 ORTHO05D001869 8.1e-30 134.4 159 51.6
CAN.G143.56 Capsicum annuum HOM05D003044 ORTHO05D001869 1.5e-28 130.2 164 50.0
Nitab4.5_0001781g0070 Nicotiana tabacum HOM05D003044 ORTHO05D001869 3.4e-28 129.0 159 49.7
Solyc11g006390.2 Solanum lycopersicum HOM05D003044 ORTHO05D001869 3.5e-25 119.0 159 48.4
Sopen11g002290 Solanum pennellii HOM05D003044 ORTHO05D001869 3.5e-25 119.0 159 48.4
Solyc05g055110.4 Solanum lycopersicum HOM05D003044 ORTHO05D001869 1.6e-22 110.2 78 76.9
Dinv03806 Davidia involucrata HOM05D003044 ORTHO05D001869 2.8e-22 109.4 168 44.6
CSS0000792 Camellia sinensis var. sinensis HOM05D003044 ORTHO05D001869 8.1e-22 107.8 169 42.6
Lj2A36T50 Lonicera japonica HOM05D003044 ORTHO05D001869 4.0e-21 105.5 162 42.6
Dinv04420 Davidia involucrata HOM05D003044 ORTHO05D001869 9.0e-21 104.4 161 44.1
Lj6g0024518 Lotus japonicus HOM05D003044 ORTHO05D001869 1.5e-20 103.6 207 38.6
MD02G1257800 Malus domestica HOM05D003044 ORTHO05D001869 3.4e-20 102.4 162 40.7
Thecc.10G119700 Theobroma cacao HOM05D003044 ORTHO05D001869 3.4e-20 102.4 158 42.4
Gohir.D04G018900 Gossypium hirsutum HOM05D003044 ORTHO05D001869 7.6e-20 101.3 158 42.4
Hma1.2p1_0098F.1_g048320 Hydrangea macrophylla HOM05D003044 ORTHO05D001869 1.0e-19 100.9 165 41.8
Gorai.012G022400 Gossypium raimondii HOM05D003044 ORTHO05D001869 1.7e-19 100.1 158 41.8
Prupe.2G074800 Prunus persica HOM05D003044 ORTHO05D001869 2.9e-19 99.4 162 40.1
CiPaw.13G045500 Carya illinoinensis HOM05D003044 ORTHO05D001869 4.9e-19 98.6 161 39.1
Gohir.A05G396100 Gossypium hirsutum HOM05D003044 ORTHO05D001869 6.5e-19 98.2 158 42.4
Lalb_Chr21g0312741 Lupinus albus HOM05D003044 ORTHO05D001869 6.5e-19 98.2 162 42.0
Duzib106G0590 Durio zibethinus HOM05D003044 ORTHO05D001869 8.4e-19 97.8 164 40.9
Duzib128G0650 Durio zibethinus HOM05D003044 ORTHO05D001869 8.4e-19 97.8 158 41.8
Potri.008G014800 Populus trichocarpa HOM05D003044 ORTHO05D001869 8.4e-19 97.8 159 41.5
TWI15G1087 Tripterygium wilfordii HOM05D003044 ORTHO05D001869 8.4e-19 97.8 157 42.0
QL04p048819 Quercus lobata HOM05D003044 ORTHO05D001869 1.4e-18 97.1 160 38.1
QL04p049165 Quercus lobata HOM05D003044 ORTHO05D001869 1.4e-18 97.1 160 38.1
Duzib114G0797 Durio zibethinus HOM05D003044 ORTHO05D001869 1.9e-18 96.7 157 40.8
arahy.Tifrunner.gnm1.ann1.JKR5UJ Arachis hypogaea HOM05D003044 ORTHO05D001869 2.5e-18 96.3 162 39.5
arahy.Tifrunner.gnm1.ann1.Y6HWEI Arachis hypogaea HOM05D003044 ORTHO05D001869 2.5e-18 96.3 162 39.5
CSS0031943 Camellia sinensis var. sinensis HOM05D003044 ORTHO05D001869 2.5e-18 96.3 162 41.4
Actinidia34738 Actinidia chinensis HOM05D003044 ORTHO05D001869 5.5e-18 95.1 169 38.5
CSS0029861 Camellia sinensis var. sinensis HOM05D003044 ORTHO05D001869 5.5e-18 95.1 165 40.6
Ca_18140_v3 Cicer arietinum L. HOM05D003044 ORTHO05D001869 5.5e-18 95.1 159 37.7
CiPaw.14G036200 Carya illinoinensis HOM05D003044 ORTHO05D001869 7.1e-18 94.7 161 38.5
PGR044G1498 Punica granatum HOM05D003044 ORTHO05D001869 7.1e-18 94.7 161 40.4
GSVIVG01034601001 Vitis vinifera HOM05D003044 ORTHO05D001869 7.1e-18 94.7 165 41.8
EL10Ac8g19444 Beta vulgaris HOM05D003044 ORTHO05D001869 9.3e-18 94.4 162 40.1
Actinidia31115 Actinidia chinensis HOM05D003044 ORTHO05D001869 1.2e-17 94.0 163 39.9
Hma1.2p1_0153F.1_g067850 Hydrangea macrophylla HOM05D003044 ORTHO05D001869 1.2e-17 94.0 164 42.7
Phvul.007G233800 Phaseolus vulgaris HOM05D003044 ORTHO05D001869 1.2e-17 94.0 158 39.2
Potri.010G244700 Populus trichocarpa HOM05D003044 ORTHO05D001869 1.2e-17 94.0 159 40.3
Sabra08G0009300 Salix brachista HOM05D003044 ORTHO05D001869 1.6e-17 93.6 158 39.9
THA.LOC104823155 Tarenaya hassleriana HOM05D003044 ORTHO05D001869 2.1e-17 93.2 160 40.6
Ciclev10014057m.g Citrus clementina HOM05D003044 ORTHO05D001869 2.7e-17 92.8 161 39.8
MD07G1063100 Malus domestica HOM05D003044 ORTHO05D001869 2.7e-17 92.8 162 38.9
Rhsim03G0094000 Rhododendron simsii HOM05D003044 ORTHO05D001869 2.7e-17 92.8 165 40.0
Cc02_g09260 Coffea canephora HOM05D003044 ORTHO05D001869 3.5e-17 92.4 164 39.0
Cfa010501 Carpinus fangiana HOM05D003044 ORTHO05D001869 4.6e-17 92.0 160 39.4
Haze_03430 Corylus avellana HOM05D003044 ORTHO05D001869 4.6e-17 92.0 160 39.4
Glyma.20G070600 Glycine max HOM05D003044 ORTHO05D001869 4.6e-17 92.0 163 39.9
Lalb_Chr02g0150891 Lupinus albus HOM05D003044 ORTHO05D001869 4.6e-17 92.0 162 40.7
Psat6g049400 Pisum sativum HOM05D003044 ORTHO05D001869 4.6e-17 92.0 160 38.1
PGSC0003DMG400023499 Solanum tuberosum HOM05D003044 ORTHO05D001869 6.0e-17 91.7 77 66.2
Lj3A920T29 Lonicera japonica HOM05D003044 ORTHO05D001869 7.9e-17 91.3 163 38.7
Manes.10G059500 Manihot esculenta HOM05D003044 ORTHO05D001869 7.9e-17 91.3 156 40.4
TWI63G0823 Tripterygium wilfordii HOM05D003044 ORTHO05D001869 1.0e-16 90.9 157 38.9
Glyma.10G120200 Glycine max HOM05D003044 ORTHO05D001869 1.3e-16 90.5 163 40.5
TAR636G1345 Trochodendron aralioides HOM05D003044 ORTHO05D001869 1.8e-16 90.1 159 41.5
VMungo0720G1731 Vigna mungo HOM05D003044 ORTHO05D001869 1.8e-16 90.1 161 38.5
Sp3g08960 Schrenkiella parvula HOM05D003044 ORTHO05D001869 2.3e-16 89.7 155 41.3
FAN10G0351 Fragaria x ananassa HOM05D003044 ORTHO05D001869 3.0e-16 89.4 163 39.3
Atru.chr12.1091 Acer truncatum HOM05D003044 ORTHO05D001869 3.9e-16 89.0 91 54.9
Cpa.g.sc33.124 Carica papaya HOM05D003044 ORTHO05D001869 3.9e-16 89.0 158 38.6
FvH4_7g05440 Fragaria vesca HOM05D003044 ORTHO05D001869 3.9e-16 89.0 160 40.0
FAN03G0009 Fragaria x ananassa HOM05D003044 ORTHO05D001869 3.9e-16 89.0 161 39.8
FAN10G3958 Fragaria x ananassa HOM05D003044 ORTHO05D001869 3.9e-16 89.0 163 39.3
RcHm_v2.0_Chr1g0332241 Rosa chinensis HOM05D003044 ORTHO05D001869 3.9e-16 89.0 163 39.3
SGA_v2.0_scaffold90G27707 Striga asiatica HOM05D003044 ORTHO05D001869 3.9e-16 89.0 104 49.0
C03p44310 Brassica napus HOM05D003044 ORTHO05D001869 5.1e-16 88.6 156 40.4
FAN01G1587 Fragaria x ananassa HOM05D003044 ORTHO05D001869 5.1e-16 88.6 163 39.3
Glyma.20G195200 Glycine max HOM05D003044 ORTHO05D001869 5.1e-16 88.6 163 37.4
Thhalv10019905m.g Eutrema salsugineum HOM05D003044 ORTHO05D001869 6.7e-16 88.2 155 40.6
FAN10G1738 Fragaria x ananassa HOM05D003044 ORTHO05D001869 6.7e-16 88.2 163 39.3
Nn6g34609 Nelumbo nucifera HOM05D003044 ORTHO05D001869 6.7e-16 88.2 171 42.7
Nn6g34615 Nelumbo nucifera HOM05D003044 ORTHO05D001869 6.7e-16 88.2 171 42.7
A03p36670 Brassica napus HOM05D003044 ORTHO05D001869 8.7e-16 87.8 156 40.4
BraA03t12831Z Brassica rapa HOM05D003044 ORTHO05D001869 8.7e-16 87.8 156 40.4
Migut.F00829 Erythranthe guttata HOM05D003044 ORTHO05D001869 8.7e-16 87.8 160 36.9
Glyma.10G194700 Glycine max HOM05D003044 ORTHO05D001869 8.7e-16 87.8 163 39.3
AUR62033063 Chenopodium quinoa HOM05D003044 ORTHO05D001869 1.1e-15 87.4 161 38.5
Migut.F01554 Erythranthe guttata HOM05D003044 ORTHO05D001869 1.1e-15 87.4 121 42.1
FAN03G0021 Fragaria x ananassa HOM05D003044 ORTHO05D001869 1.5e-15 87.0 161 37.9
vmacro10333 Vaccinium macrocarpon HOM05D003044 ORTHO05D001869 1.5e-15 87.0 94 53.2
TAR633G1492 Trochodendron aralioides HOM05D003044 ORTHO05D001869 1.9e-15 86.7 174 37.9
FvH4_7g05480 Fragaria vesca HOM05D003044 ORTHO05D001869 2.5e-15 86.3 160 39.4
Medtr1g040610 Medicago truncatula HOM05D003044 ORTHO05D001869 2.5e-15 86.3 160 37.5
Carub.0003s0988 Capsella rubella HOM05D003044 ORTHO05D001869 3.3e-15 85.9 164 39.6
Rhsim09G0140200 Rhododendron simsii HOM05D003044 ORTHO05D001869 3.3e-15 85.9 178 36.5
MSTRG.27548 Avicennia marina HOM05D003044 ORTHO05D001869 4.3e-15 85.5 180 37.2
BolC3t16701H Brassica oleracea HOM05D003044 ORTHO05D001869 4.3e-15 85.5 156 39.7
CARHR085230 Cardamine hirsuta HOM05D003044 ORTHO05D001869 4.3e-15 85.5 156 39.1
Manes.07G084000 Manihot esculenta HOM05D003044 ORTHO05D001869 4.3e-15 85.5 158 39.9
AT3G10650 Arabidopsis thaliana HOM05D003044 ORTHO05D001869 5.7e-15 85.1 156 40.4
Gorai.012G022500 Gossypium raimondii HOM05D003044 ORTHO05D001869 7.4e-15 84.7 158 38.6
VMungo0720G0604 Vigna mungo HOM05D003044 ORTHO05D001869 7.4e-15 84.7 160 36.2
Gohir.D04G019000 Gossypium hirsutum HOM05D003044 ORTHO05D001869 9.6e-15 84.3 157 38.9
THA.LOC104816476 Tarenaya hassleriana HOM05D003044 ORTHO05D001869 9.6e-15 84.3 162 37.7
Aa31LG3G3500 Aethionema arabicum HOM05D003044 ORTHO05D001869 2.8e-14 82.8 155 37.4
Lalb_Chr19g0128991 Lupinus albus HOM05D003044 ORTHO05D001869 2.8e-14 82.8 124 42.7
AUR62042206 Chenopodium quinoa HOM05D003044 ORTHO05D001869 3.7e-14 82.4 162 38.3
PSO339G5639 Papaver somniferum HOM05D003044 ORTHO05D001869 3.7e-14 82.4 183 36.1
Hund22391 Selenicereus undatus HOM05D003044 ORTHO05D001869 3.7e-14 82.4 113 45.1
TPR.G19799 Trifolium pratense HOM05D003044 ORTHO05D001869 3.7e-14 82.4 160 34.4
Eucgr.J00304 Eucalyptus grandis HOM05D003044 ORTHO05D001869 4.8e-14 82.0 154 36.4
MBI05_g36784_MAGBIO Magnolia biondii HOM05D003044 ORTHO05D001869 4.8e-14 82.0 168 37.5
Gohir.A05G396000 Gossypium hirsutum HOM05D003044 ORTHO05D001869 8.2e-14 81.3 158 38.0
Sed0010208 Sechium edule HOM05D003044 ORTHO05D001869 1.1e-13 80.9 157 37.6
Ah.09g231710 Amaranthus hybridus HOM05D003044 ORTHO05D001869 1.8e-13 80.1 158 36.1
BolC1t05369H Brassica oleracea HOM05D003044 ORTHO05D001869 1.8e-13 80.1 142 41.5
DCAR_018987 Daucus carota HOM05D003044 ORTHO05D001869 1.8e-13 80.1 164 39.0
Lsat_1_v5_gn_2_106321 Lactuca sativa HOM05D003044 ORTHO05D001869 1.8e-13 80.1 104 50.0
TPR.G13387 Trifolium pratense HOM05D003044 ORTHO05D001869 1.8e-13 80.1 161 38.5
ClCG08G008450 Citrullus lanatus HOM05D003044 ORTHO05D001869 2.4e-13 79.7 161 36.6
Oeu040012.1 Olea europaea HOM05D003044 ORTHO05D001869 4.1e-13 79.0 164 37.2
SGA_v2.0_scaffold13G06427 Striga asiatica HOM05D003044 ORTHO05D001869 4.1e-13 79.0 139 40.3
Oeu025606.1 Olea europaea HOM05D003044 ORTHO05D001869 5.3e-13 78.6 159 39.0
Ca_10422_v3 Cicer arietinum L. HOM05D003044 ORTHO05D001869 6.9e-13 78.2 162 35.8
HanXRQChr08g0217351 Helianthus annuus HOM05D003044 ORTHO05D001869 6.9e-13 78.2 138 40.6
Lalb_Chr01g0010681 Lupinus albus HOM05D003044 ORTHO05D001869 9.0e-13 77.8 207 31.9
Phvul.007G136500 Phaseolus vulgaris HOM05D003044 ORTHO05D001869 9.0e-13 77.8 116 40.5
Ah.14g085720 Amaranthus hybridus HOM05D003044 ORTHO05D001869 1.2e-12 77.4 164 34.1
Sed0023754 Sechium edule HOM05D003044 ORTHO05D001869 1.5e-12 77.0 159 37.1
Ca_10372_v3 Cicer arietinum L. HOM05D003044 ORTHO05D001869 2.6e-12 76.3 161 35.4
CsaV3_6G004440 Cucumis sativus L. HOM05D003044 ORTHO05D001869 2.6e-12 76.3 161 36.0
AL3G22120 Arabidopsis lyrata HOM05D003044 ORTHO05D001869 3.4e-12 75.9 109 45.0
Lsat_1_v5_gn_8_21821 Lactuca sativa HOM05D003044 ORTHO05D001869 4.5e-12 75.5 162 34.6
Sc12g0008100 Simmondsia chinensis HOM05D003044 ORTHO05D001869 7.6e-12 74.7 164 36.6
HanXRQChr07g0194411 Helianthus annuus HOM05D003044 ORTHO05D001869 1.0e-11 74.3 163 36.8
A01p41560 Brassica napus HOM05D003044 ORTHO05D001869 1.3e-11 73.9 155 38.1
BraA01t04231Z Brassica rapa HOM05D003044 ORTHO05D001869 1.3e-11 73.9 155 38.1
Psat6g171360 Pisum sativum HOM05D003044 ORTHO05D001869 1.7e-11 73.6 165 35.2
Lj5g0009221 Lotus japonicus HOM05D003044 ORTHO05D001869 3.8e-11 72.4 162 35.8
Nn2g14384 Nelumbo nucifera HOM05D003044 ORTHO05D001869 5.0e-11 72.0 170 37.6
PSO384G0573 Papaver somniferum HOM05D003044 ORTHO05D001869 5.0e-11 72.0 105 46.7
Sabra10G0191200 Salix brachista HOM05D003044 ORTHO05D001869 6.5e-11 71.6 94 43.6
ATR0697G055 Amborella trichopoda HOM05D003044 ORTHO05D001869 8.4e-11 71.2 171 33.9
ECA238G0186 Erigeron canadensis HOM05D003044 ORTHO05D001869 8.4e-11 71.2 160 37.5
MELO3C019915.2 Cucumis melo HOM05D003044 ORTHO05D001869 1.1e-10 70.9 172 34.3
MBI11_g01313_MAGBIO Magnolia biondii HOM05D003044 ORTHO05D001869 2.5e-10 69.7 168 34.5
CANSAT56G3871 Cannabis sativa HOM05D003044 ORTHO05D001869 5.5e-10 68.6 113 42.5
Medtr1g090340 Medicago truncatula HOM05D003044 ORTHO05D001869 5.5e-10 68.6 161 34.2
Aqoxy1G00609 Aquilegia oxysepala HOM05D003044 ORTHO05D001869 1.2e-09 67.4 166 33.7
HanXRQChr02g0049311 Helianthus annuus HOM05D003044 ORTHO05D001869 2.1e-09 66.6 135 37.0
Aqoxy2G00627 Aquilegia oxysepala HOM05D003044 ORTHO05D001869 4.6e-09 65.5 157 37.6
HanXRQChr07g0195171 Helianthus annuus HOM05D003044 ORTHO05D001869 4.6e-09 65.5 102 44.1
vmacro07277 Vaccinium macrocarpon HOM05D003044 ORTHO05D001869 7.9e-09 64.7 100 42.0
HanXRQChr11g0322911 Helianthus annuus HOM05D003044 ORTHO05D001869 2.3e-08 63.2 163 35.0
ECA233G5261 Erigeron canadensis HOM05D003044 ORTHO05D001869 8.7e-08 61.2 165 33.3
Oeu015285.1 Olea europaea HOM05D003044 ORTHO05D001869 8.7e-08 61.2 77 48.1
CDE07G1072 Ceratophyllum demersum HOM05D003044 ORTHO05D001869 1.1e-07 60.8 171 34.5
SalBow6G6809 Salvia bowleyana HOM05D003044 ORTHO05D001869 2.8e-06 56.2 139 34.5
HanXRQChr07g0195181 Helianthus annuus HOM05D003044 ORTHO05D001869 3.7e-06 55.8 155 34.8


User provided reference genes

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