Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G741.43 Capsicum annuum HOM05D002034 ORTHO05D006399 2.1e-195 685.6 373 100.0
Nitab4.5_0004174g0030 Nicotiana tabacum HOM05D002034 ORTHO05D006399 3.2e-132 475.7 346 76.9
Nitab4.5_0000967g0020 Nicotiana tabacum HOM05D002034 ORTHO05D006399 7.8e-118 427.9 345 68.4
Nitab4.5_0004155g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 1.8e-111 406.8 349 67.6
Nitab4.5_0006148g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 7.0e-111 404.8 351 68.1
Sopen06g033600 Solanum pennellii HOM05D002034 ORTHO05D006399 6.8e-106 388.3 351 65.8
Peaxi162Scf00390g00821 Petunia axillaris HOM05D002034 ORTHO05D006399 3.7e-104 382.5 344 65.7
PGSC0003DMG400030374 Solanum tuberosum HOM05D002034 ORTHO05D006399 8.3e-104 381.3 347 64.3
Actinidia34475 Actinidia chinensis HOM05D002034 ORTHO05D006399 1.1e-100 370.9 352 62.5
vmacro14615 Vaccinium macrocarpon HOM05D002034 ORTHO05D006399 1.4e-95 354.0 391 60.4
Oeu053356.2 Olea europaea HOM05D002034 ORTHO05D006399 1.2e-94 350.9 354 58.8
EL10Ac7g15904 Beta vulgaris HOM05D002034 ORTHO05D006399 3.0e-93 346.3 360 58.9
Thecc.09G355700 Theobroma cacao HOM05D002034 ORTHO05D006399 3.6e-91 339.3 369 58.8
Hma1.2p1_0146F.1_g065460 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 1.1e-90 337.8 356 60.1
Actinidia23869 Actinidia chinensis HOM05D002034 ORTHO05D006399 5.2e-90 335.5 343 57.4
Hma1.2p1_0841F.1_g226910 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 5.2e-90 335.5 308 59.7
Phvul.008G257600 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 8.9e-90 334.7 364 54.9
Glyma.14G197700 Glycine max HOM05D002034 ORTHO05D006399 1.2e-89 334.3 348 57.5
Hund18957 Selenicereus undatus HOM05D002034 ORTHO05D006399 1.2e-89 334.3 363 56.5
Cc01_g14710 Coffea canephora HOM05D000417 ORTHO05D000342 2.6e-89 333.2 355 58.0
unitig_26.g10217 Utricularia gibba HOM05D002034 ORTHO05D006399 4.4e-89 332.4 350 60.0
Oeu064670.1 Olea europaea HOM05D002034 ORTHO05D006399 5.8e-89 332.0 349 57.0
Psat5g153880 Pisum sativum HOM05D002034 ORTHO05D006399 1.3e-88 330.9 365 54.5
Potri.001G281300 Populus trichocarpa HOM05D002034 ORTHO05D006399 2.2e-88 330.1 378 53.7
VMungo0647G1676 Vigna mungo HOM05D002034 ORTHO05D006399 2.9e-88 329.7 361 56.0
Manes.02G216300 Manihot esculenta HOM05D002034 ORTHO05D006399 1.9e-87 327.0 368 55.2
Nn2g13237 Nelumbo nucifera HOM05D002034 ORTHO05D006399 9.2e-87 324.7 349 57.0
BraA03t10531Z Brassica rapa HOM05D002034 ORTHO05D004251 1.3e-85 320.9 353 56.7
Migut.N00767 Erythranthe guttata HOM05D002034 ORTHO05D006399 8.7e-85 318.2 351 59.5
Duzib170G0382 Durio zibethinus HOM05D002034 ORTHO05D006399 1.1e-84 317.8 371 53.4
QL01p039969 Quercus lobata HOM05D002034 ORTHO05D006399 1.1e-84 317.8 364 56.6
SGA_v2.0_scaffold104G30143 Striga asiatica HOM05D002034 ORTHO05D006399 1.1e-84 317.8 411 53.3
Glyma.02G230600 Glycine max HOM05D002034 ORTHO05D006399 1.9e-84 317.0 363 53.7
Solyc06g082220.4 Solanum lycopersicum HOM05D002034 ORTHO05D006399 9.6e-84 314.7 265 70.6
C03p14310 Brassica napus HOM05D002034 ORTHO05D006399 8.1e-83 311.6 353 54.7
Dinv28685 Davidia involucrata HOM05D002034 ORTHO05D006399 4.0e-82 309.3 356 59.0
Lj6g0014994 Lotus japonicus HOM05D002034 ORTHO05D006399 1.2e-81 307.8 369 55.8
GSVIVG01030073001 Vitis vinifera HOM05D000417 ORTHO05D000342 9.9e-81 304.7 347 53.0
AL8G34690 Arabidopsis lyrata HOM05D002034 ORTHO05D006399 2.2e-80 303.5 373 53.9
Lalb_Chr17g0345341 Lupinus albus HOM05D002034 ORTHO05D006399 2.9e-80 303.1 367 52.9
Dinv09661 Davidia involucrata HOM05D002034 ORTHO05D006399 4.9e-80 302.4 351 55.8
Carub.0008s1906 Capsella rubella HOM05D002034 ORTHO05D006399 8.4e-80 301.6 388 55.7
Potri.009G076600 Populus trichocarpa HOM05D002034 ORTHO05D006399 1.4e-79 300.8 364 53.6
CARHR272300 Cardamine hirsuta HOM05D002034 ORTHO05D006399 1.9e-79 300.4 363 54.3
Manes.18G141005 Manihot esculenta HOM05D002034 ORTHO05D006399 1.9e-79 300.4 374 51.9
MELO3C020506.2 Cucumis melo HOM05D002034 ORTHO05D006399 4.2e-79 299.3 376 53.5
Phvul.006G072900 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 1.2e-78 297.7 382 52.4
TWI79G0783 Tripterygium wilfordii HOM05D002034 ORTHO05D006399 2.7e-78 296.6 363 52.1
Aa31LG11G250 Aethionema arabicum HOM05D002034 ORTHO05D006399 5.1e-77 292.4 370 51.6
Medtr3g031740 Medicago truncatula HOM05D002034 ORTHO05D006399 1.5e-76 290.8 365 51.8
Sed0020719 Sechium edule HOM05D002034 ORTHO05D006399 1.9e-76 290.4 375 53.9
A03p12200 Brassica napus HOM05D002034 ORTHO05D004251 7.3e-76 288.5 358 51.7
Gohir.A03G026200 Gossypium hirsutum HOM05D002034 ORTHO05D006399 7.3e-76 288.5 370 53.8
Prupe.6G050700 Prunus persica HOM05D002034 ORTHO05D006399 9.6e-76 288.1 371 50.7
CsaV3_1G036630 Cucumis sativus L. HOM05D002034 ORTHO05D006399 1.6e-75 287.3 381 53.0
CDE06G0527 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 2.8e-75 286.6 362 48.9
Lj1C128G5 Lonicera japonica HOM05D002034 ORTHO05D006399 8.1e-75 285.0 394 51.3
ClCG03G000290 Citrullus lanatus HOM05D002034 ORTHO05D006399 1.1e-74 284.6 391 49.9
Glyma.11G165000 Glycine max HOM05D002034 ORTHO05D006399 1.1e-74 284.6 372 53.2
Lj2A1091G43 Lonicera japonica HOM05D002034 ORTHO05D006399 1.4e-74 284.3 344 52.6
C09p50360 Brassica napus HOM05D002034 ORTHO05D006399 3.1e-74 283.1 355 53.8
Thhalv10012621m.g Eutrema salsugineum HOM05D000417 ORTHO05D000342 9.0e-74 281.6 358 52.0
BraA02t05843Z Brassica rapa HOM05D002034 ORTHO05D006399 1.2e-73 281.2 356 49.2
Sp6g20160 Schrenkiella parvula HOM05D002034 ORTHO05D006399 5.8e-73 278.9 349 55.0
BcaC03g14089 Brassica carinata HOM05D002034 ORTHO05D006399 7.6e-73 278.5 355 52.1
A10p15750 Brassica napus HOM05D002034 ORTHO05D004251 9.9e-73 278.1 352 53.1
C02p13300 Brassica napus HOM05D002034 ORTHO05D006399 9.9e-73 278.1 357 52.1
BolC2t07445H Brassica oleracea HOM05D002034 ORTHO05D006399 2.2e-72 276.9 358 52.0
Cfa011758 Carpinus fangiana HOM05D002034 ORTHO05D006399 6.4e-72 275.4 363 53.2
HPP92_003242 Vanilla planifolia HOM05D002034 ORTHO05D006399 1.1e-71 274.6 424 45.8
Ah.08g215230 Amaranthus hybridus HOM05D002034 ORTHO05D006399 4.2e-71 272.7 351 51.3
DCAR_007354 Daucus carota HOM05D002034 ORTHO05D006399 5.4e-71 272.3 353 54.4
Lalb_Chr10g0103541 Lupinus albus HOM05D002034 ORTHO05D006399 9.3e-71 271.6 365 50.7
Sed0021639 Sechium edule HOM05D002034 ORTHO05D006399 2.7e-70 270.0 389 48.3
Sabra16G0175000 Salix brachista HOM05D002034 ORTHO05D006399 3.5e-70 269.6 409 51.3
AT5G58470 Arabidopsis thaliana HOM05D002034 ORTHO05D006399 4.6e-70 269.2 358 51.1
Gohir.A03G026400 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.3e-69 267.7 373 47.7
Gohir.D05G108500 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.3e-69 267.7 349 51.9
BraA10t43645Z Brassica rapa HOM05D002034 ORTHO05D006399 2.3e-69 266.9 355 51.8
Glyma.18G058200 Glycine max HOM05D002034 ORTHO05D006399 5.1e-69 265.8 382 49.5
Lalb_Chr04g0252031 Lupinus albus HOM05D002034 ORTHO05D006399 6.7e-69 265.4 363 50.7
ATR0174G006 Amborella trichopoda HOM05D002034 ORTHO05D006399 8.7e-69 265.0 394 44.7
CDE04G0201 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 8.7e-69 265.0 259 59.5
Gorai.009G112700 Gossypium raimondii HOM05D002034 ORTHO05D006399 8.7e-69 265.0 347 51.9
CiPaw.14G055200 Carya illinoinensis HOM05D002034 ORTHO05D006399 1.1e-68 264.6 361 50.4
Sabra09G0058400 Salix brachista HOM05D002034 ORTHO05D006399 2.5e-68 263.5 323 53.9
HPP92_025110 Vanilla planifolia HOM05D002034 ORTHO05D006399 5.6e-68 262.3 349 50.4
SHI19198 Sapria himalayana HOM05D002034 ORTHO05D006399 7.4e-68 261.9 372 47.3
TAR633G1742 Trochodendron aralioides HOM05D002034 ORTHO05D006399 7.4e-68 261.9 352 50.3
Duzib168G0356 Durio zibethinus HOM05D002034 ORTHO05D006399 1.3e-67 261.2 373 50.7
ECA248G0185 Erigeron canadensis HOM05D002034 ORTHO05D006399 2.1e-67 260.4 386 49.5
MBI05_g02399_MAGBIO Magnolia biondii HOM05D002034 ORTHO05D006399 3.7e-67 259.6 313 49.2
BcaB05g22434 Brassica carinata HOM05D002034 ORTHO05D006399 4.8e-67 259.2 363 52.9
CSS0049450 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 6.2e-67 258.8 340 50.6
arahy.Tifrunner.gnm1.ann1.S7G6UF Arachis hypogaea HOM05D002034 ORTHO05D006399 8.1e-67 258.5 377 46.9
Lsat_1_v5_gn_5_174460 Lactuca sativa HOM05D000417 ORTHO05D000342 8.1e-67 258.5 387 52.2
Gohir.D03G142300 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.4e-66 257.7 368 52.2
Gorai.003G149400 Gossypium raimondii HOM05D002034 ORTHO05D006399 1.4e-66 257.7 368 52.2
CSS0042328 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 1.8e-66 257.3 351 50.7
VMungo0540G2394 Vigna mungo HOM05D002034 ORTHO05D006399 1.8e-66 257.3 379 49.3
arahy.Tifrunner.gnm1.ann1.60GRLQ Arachis hypogaea HOM05D002034 ORTHO05D006399 2.4e-66 256.9 348 49.7
Hma1.2p1_2630F.1_g325730 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 1.2e-65 254.6 265 57.4
BolC9t57892H Brassica oleracea HOM05D002034 ORTHO05D006399 1.5e-65 254.2 349 51.3
Aqoxy1G01307 Aquilegia oxysepala HOM05D002034 ORTHO05D006399 2.0e-65 253.8 383 46.5
AUR62009684 Chenopodium quinoa HOM05D002034 ORTHO05D006399 2.0e-65 253.8 272 59.6
FAN21G0003 Fragaria x ananassa HOM05D002034 ORTHO05D006399 5.8e-65 252.3 371 46.9
Ca_05091_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 7.6e-65 251.9 365 50.1
Ca_14994_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 7.6e-65 251.9 365 50.1
arahy.Tifrunner.gnm1.ann1.99AA0S Arachis hypogaea HOM05D002034 ORTHO05D006399 1.3e-64 251.1 363 49.9
CSS0028239 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 2.1e-62 243.8 328 49.7
SEGI_19079 Sequoiadendron giganteum HOM05D002034 ORTHO05D006399 2.7e-62 243.4 379 44.9
A02p07680 Brassica napus HOM05D002034 ORTHO05D006399 7.9e-62 241.9 340 50.0
Cpa.g.sc2.376 Carica papaya HOM05D002034 ORTHO05D006399 1.8e-61 240.7 336 54.2
Zm00001eb123460 Zea mays HOM05D002034 ORTHO05D006399 2.3e-61 240.4 399 45.9
AUR62001888 Chenopodium quinoa HOM05D002034 ORTHO05D006399 3.0e-61 240.0 214 65.9
BcaB08g36182 Brassica carinata HOM05D002034 ORTHO05D006399 1.9e-60 237.3 304 52.6
COL.COLO4_11127 Corchorus olitorius HOM05D002034 ORTHO05D006399 3.3e-60 236.5 179 71.5
Gorai.003G149100 Gossypium raimondii HOM05D002034 ORTHO05D006399 3.3e-60 236.5 374 45.7
Gohir.D03G142100 Gossypium hirsutum HOM05D002034 ORTHO05D006399 4.3e-60 236.1 373 45.8
Atru.chr3.4131 Acer truncatum HOM05D002034 ORTHO05D006399 1.6e-59 234.2 386 45.3
MD03G1060300 Malus domestica HOM05D002034 ORTHO05D006399 3.7e-59 233.0 372 47.8
FAN16G2984 Fragaria x ananassa HOM05D002034 ORTHO05D006399 3.1e-58 229.9 372 45.2
Os01g0164400 Oryza sativa ssp. japonica HOM05D002034 ORTHO05D006399 3.1e-58 229.9 165 70.3
Gohir.A05G108332 Gossypium hirsutum HOM05D002034 ORTHO05D006399 4.0e-58 229.6 330 52.1
RcHm_v2.0_Chr5g0071281 Rosa chinensis HOM05D002034 ORTHO05D006399 2.2e-56 223.8 375 43.7
FvH4_3g39510 Fragaria vesca HOM05D002034 ORTHO05D006399 4.9e-56 222.6 372 44.6
FAN11G3559 Fragaria x ananassa HOM05D002034 ORTHO05D006399 3.2e-55 219.9 368 45.1
TAR623G0025 Trochodendron aralioides HOM05D002034 ORTHO05D006399 1.6e-54 217.6 355 46.5
Zm00001eb336220 Zea mays HOM05D002034 ORTHO05D006399 1.6e-54 217.6 412 44.9
Haze_24395 Corylus avellana HOM05D002034 ORTHO05D006399 3.0e-53 213.4 274 54.4
FAN25G3394 Fragaria x ananassa HOM05D000417 ORTHO05D000342 3.9e-53 213.0 368 44.8
Ciclev10027796m.g Citrus clementina HOM05D000417 ORTHO05D000342 3.4e-49 199.9 248 51.2
MD11G1063400 Malus domestica HOM05D002034 ORTHO05D006399 1.7e-48 197.6 370 43.2
AagrBONN_evm.TU.Sc2ySwM_344.1306 Anthoceros agrestis HOM05D002034 ORTHO05D006399 3.8e-48 196.4 163 64.4
Mapoly0074s0009 Marchantia polymorpha HOM05D002034 ORTHO05D006399 8.5e-48 195.3 156 66.0
CBR_g17146 Chara braunii HOM05D002034 ORTHO05D006399 9.4e-47 191.8 310 44.2
Pp3c17_1620 Physcomitrium patens HOM05D002034 ORTHO05D006399 1.2e-46 191.4 340 41.8
Pp3c12_3430 Physcomitrium patens HOM05D002034 ORTHO05D006399 1.6e-46 191.0 299 42.5
SMO358G0702 Selaginella moellendorffii HOM05D002034 ORTHO05D006399 7.9e-46 188.7 118 73.7
Sc21g0005190 Simmondsia chinensis HOM05D002034 ORTHO05D006399 7.7e-41 172.2 244 50.4
BolC3t13875H Brassica oleracea HOM05D002034 ORTHO05D006399 1.3e-40 171.4 250 47.2
BolC9t57305H Brassica oleracea HOM05D002034 ORTHO05D006399 7.9e-38 162.2 296 41.2
BcaC01g04152 Brassica carinata HOM05D002034 ORTHO05D006399 4.2e-31 139.8 254 39.8
Actinidia23208 Actinidia chinensis HOM05D002034 ORTHO05D006399 1.8e-29 134.4 100 70.0
C02p38030 Brassica napus HOM05D002034 ORTHO05D006399 4.4e-28 129.8 253 42.3
A09p54750 Brassica napus HOM05D002034 ORTHO05D006399 4.5e-25 119.8 155 55.5
BolC9t53947H Brassica oleracea HOM05D002034 ORTHO05D006399 2.5e-23 114.0 106 57.5
C09p44360 Brassica napus HOM05D002034 ORTHO05D006399 7.5e-20 102.4 262 40.8
MCO15G578 Micromonas commoda HOM05D002034 ORTHO05D000124 1.3e-19 101.7 97 46.4
C04p55240 Brassica napus HOM05D002034 ORTHO05D006399 4.1e-18 96.7 138 47.1
C02p11700 Brassica napus HOM05D002034 ORTHO05D006399 1.2e-17 95.1 272 38.6
Nn1g04222 Nelumbo nucifera HOM05D002034 ORTHO05D006399 4.8e-11 73.2 130 40.8
Cre07.g328400 Chlamydomonas reinhardtii HOM05D005264 ORTHO05D005428 1.8e-10 71.2 115 39.1
vmacro16010 Vaccinium macrocarpon HOM05D005264 ORTHO05D005428 3.1e-10 70.5 99 42.4
MCO15G549 Micromonas commoda HOM05D005264 ORTHO05D005428 5.4e-10 69.7 94 42.6
Lsat_1_v5_gn_3_32780 Lactuca sativa HOM05D005264 ORTHO05D005428 9.1e-10 68.9 93 43.0
AagrBONN_evm.TU.Sc2ySwM_344.985 Anthoceros agrestis HOM05D005264 ORTHO05D005428 1.6e-09 68.2 92 44.6
DCAR_002562 Daucus carota HOM05D005264 ORTHO05D005428 5.9e-09 66.2 93 40.9
SalBow1G6014 Salvia bowleyana HOM05D005264 ORTHO05D005428 1.0e-08 65.5 93 43.0
Atru.chr11.1210 Acer truncatum HOM05D005264 ORTHO05D005428 2.3e-08 64.3 116 38.8
ClCG10G015380 Citrullus lanatus HOM05D005264 ORTHO05D005428 2.9e-08 63.9 96 42.7
Sabra10G0130200 Salix brachista HOM05D005264 ORTHO05D005428 2.9e-08 63.9 105 41.9
arahy.Tifrunner.gnm1.ann1.6SGT2N Arachis hypogaea HOM05D005264 ORTHO05D005428 3.8e-08 63.5 105 41.0
Os09g0299500 Oryza sativa ssp. japonica HOM05D005264 ORTHO05D005428 3.8e-08 63.5 93 39.8
Potri.010G170700 Populus trichocarpa HOM05D005264 ORTHO05D005428 5.0e-08 63.2 96 40.6
TAR622G0680 Trochodendron aralioides HOM05D005264 ORTHO05D005428 1.1e-07 62.0 100 38.0
EL10Ac9g22906 Beta vulgaris HOM05D005264 ORTHO05D005428 1.9e-07 61.2 93 40.9
Cfa008720 Carpinus fangiana HOM05D005264 ORTHO05D001742 1.9e-07 61.2 134 38.1
CBR_g224 Chara braunii HOM05D005264 ORTHO05D005428 2.5e-07 60.8 39 61.5
AUR62017649 Chenopodium quinoa HOM05D005264 ORTHO05D005428 2.5e-07 60.8 93 39.8
FAN17G2909 Fragaria x ananassa HOM05D005264 ORTHO05D005428 7.2e-07 59.3 92 39.1
Gohir.D08G167332 Gossypium hirsutum HOM05D005264 ORTHO05D005428 1.2e-06 58.5 99 38.4
Gohir.D07G112100 Gossypium hirsutum HOM05D005264 ORTHO05D005428 2.8e-06 57.4 126 36.5
CANSAT80G2191 Cannabis sativa HOM05D000428 ORTHO05D000582 4.7e-06 56.6 93 35.5
Sc18g0001310 Simmondsia chinensis HOM05D005514 ORTHO05D006563 6.1e-06 56.2 44 63.6
Zm00001eb104370 Zea mays HOM05D005264 ORTHO05D005428 6.1e-06 56.2 33 66.7
Zm00001eb320850 Zea mays HOM05D005264 ORTHO05D005428 6.1e-06 56.2 33 66.7
FvH4_4g36691 Fragaria vesca HOM05D005264 ORTHO05D005428 8.0e-06 55.8 33 63.6
RcHm_v2.0_Chr4g0446411 Rosa chinensis HOM05D005264 ORTHO05D005428 8.0e-06 55.8 33 63.6


User provided reference genes

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