Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G716.8 Capsicum annuum HOM05D000042 ORTHO05D000980 1.1e-38 162.9 87 100.0
Solyc11g005120.3 Solanum lycopersicum HOM05D000042 ORTHO05D000980 1.3e-28 129.4 78 83.3
Sopen11g001120 Solanum pennellii HOM05D000042 ORTHO05D000980 1.3e-28 129.4 78 83.3
Nitab4.5_0001168g0110 Nicotiana tabacum HOM05D000042 ORTHO05D000980 6.2e-26 120.6 75 85.3
Cc10_g12760 Coffea canephora HOM05D000042 ORTHO05D000980 5.2e-25 117.5 87 71.3
Peaxi162Scf00066g00133 Petunia axillaris HOM05D000042 ORTHO05D000980 5.2e-25 117.5 75 80.0
Nitab4.5_0003863g0050 Nicotiana tabacum HOM05D000042 ORTHO05D000980 1.2e-24 116.3 75 82.7
HanXRQChr05g0149341 Helianthus annuus HOM05D000042 ORTHO05D000980 6.4e-23 110.5 75 77.3
SGA_v2.0_scaffold52G18923 Striga asiatica HOM05D000042 ORTHO05D000980 5.4e-22 107.5 75 74.7
Migut.C01064 Erythranthe guttata HOM05D000042 ORTHO05D000980 1.0e-20 103.2 75 72.0
Lsat_1_v5_gn_6_110160 Lactuca sativa HOM05D000042 ORTHO05D000980 9.5e-19 96.7 80 62.5
Hma1.2p1_1172F.1_g263630 Hydrangea macrophylla HOM05D000042 ORTHO05D000980 2.1e-18 95.5 75 64.0
Actinidia29488 Actinidia chinensis HOM05D000042 ORTHO05D000980 2.8e-18 95.1 75 65.3
DCAR_014366 Daucus carota HOM05D000042 ORTHO05D000980 3.6e-18 94.7 75 65.3
Atru.chr10.451 Acer truncatum HOM05D000042 ORTHO05D000980 6.2e-18 94.0 75 65.3
GSVIVG01012110001 Vitis vinifera HOM05D000042 ORTHO05D000980 8.1e-18 93.6 75 61.3
Cpa.g.sc30.148 Carica papaya HOM05D002990 ORTHO05D003954 1.5e-16 89.4 76 65.8
Gohir.D13G060800 Gossypium hirsutum HOM05D000042 ORTHO05D000980 2.0e-16 89.0 82 54.9
Gorai.013G069000 Gossypium raimondii HOM05D000042 ORTHO05D000980 2.0e-16 89.0 82 54.9
SalBow7G1737 Salvia bowleyana HOM05D000042 ORTHO05D000980 2.0e-16 89.0 76 64.5
Manes.04G061414 Manihot esculenta HOM05D000042 ORTHO05D000980 2.6e-16 88.6 82 53.7
vmacro00861 Vaccinium macrocarpon HOM05D000042 ORTHO05D000980 2.6e-16 88.6 75 58.7
Oeu038316.1 Olea europaea HOM05D000042 ORTHO05D000980 4.4e-16 87.8 76 63.2
Cfa008755 Carpinus fangiana HOM05D000042 ORTHO05D000980 5.8e-16 87.4 83 56.6
Thecc.02G157800 Theobroma cacao HOM05D000042 ORTHO05D000980 7.6e-16 87.0 82 52.4
Ciclev10032489m.g Citrus clementina HOM05D000042 ORTHO05D000980 9.9e-16 86.7 82 52.4
Phvul.003G003800 Phaseolus vulgaris HOM05D000042 ORTHO05D000980 1.7e-15 85.9 74 58.1
Gohir.A04G108400 Gossypium hirsutum HOM05D000042 ORTHO05D000980 2.2e-15 85.5 82 53.7
Gohir.D04G148000 Gossypium hirsutum HOM05D000042 ORTHO05D000980 2.2e-15 85.5 82 53.7
Duzib248G1578 Durio zibethinus HOM05D000042 ORTHO05D000980 6.4e-15 84.0 82 51.2
CiPaw.05G170200 Carya illinoinensis HOM05D000042 ORTHO05D000980 8.4e-15 83.6 82 52.4
Manes.11G102300 Manihot esculenta HOM05D000042 ORTHO05D000980 8.4e-15 83.6 82 48.8
QL11p013875 Quercus lobata HOM05D000042 ORTHO05D000980 1.1e-14 83.2 73 60.3
VMungo0251G0256 Vigna mungo HOM05D000042 ORTHO05D000980 1.9e-14 82.4 74 55.4
GSVIVG01026207001 Vitis vinifera HOM05D000042 ORTHO05D000980 1.9e-14 82.4 82 51.2
Duzib052G1119 Durio zibethinus HOM05D000042 ORTHO05D000980 4.2e-14 81.3 82 48.8
Glyma.20G001900 Glycine max HOM05D000042 ORTHO05D000980 9.2e-14 80.1 74 51.4
Oeu051983.1 Olea europaea HOM05D000042 ORTHO05D000980 1.2e-13 79.7 76 56.6
Potri.007G073000 Populus trichocarpa HOM05D000042 ORTHO05D000980 1.2e-13 79.7 82 50.0
CiPaw.06G061600 Carya illinoinensis HOM05D000042 ORTHO05D000980 1.6e-13 79.3 75 54.7
TWI74G0210 Tripterygium wilfordii HOM05D000042 ORTHO05D000980 1.6e-13 79.3 74 55.4
Glyma.09G283800 Glycine max HOM05D000042 ORTHO05D000980 2.1e-13 79.0 74 52.7
Lsat_1_v5_gn_6_110140 Lactuca sativa HOM05D000042 ORTHO05D000980 2.1e-13 79.0 73 61.6
Potri.015G125501 Populus trichocarpa HOM05D000042 ORTHO05D000980 2.1e-13 79.0 71 60.6
THA.LOC104800811 Tarenaya hassleriana HOM05D000042 ORTHO05D000980 2.1e-13 79.0 82 51.2
PSO339G5414 Papaver somniferum HOM05D000042 ORTHO05D000980 2.7e-13 78.6 75 52.0
AL6G34490 Arabidopsis lyrata HOM05D000042 ORTHO05D000980 7.8e-13 77.0 82 52.4
PGR119G1387 Punica granatum HOM05D000042 ORTHO05D000980 7.8e-13 77.0 71 57.7
Ciclev10016394m.g Citrus clementina HOM05D000042 ORTHO05D000980 1.3e-12 76.3 72 59.7
PSO384G0064 Papaver somniferum HOM05D000042 ORTHO05D000980 1.3e-12 76.3 75 50.7
Prupe.4G113500 Prunus persica HOM05D000042 ORTHO05D000980 1.3e-12 76.3 81 48.1
Cfa000696 Carpinus fangiana HOM05D000042 ORTHO05D000980 3.0e-12 75.1 71 56.3
BcaB07g29861 Brassica carinata HOM05D000042 ORTHO05D000980 3.9e-12 74.7 82 51.2
Atru.chr11.1138 Acer truncatum HOM05D000042 ORTHO05D000980 5.1e-12 74.3 82 47.6
MD05G1250100 Malus domestica HOM05D000042 ORTHO05D000980 8.7e-12 73.6 71 54.9
RcHm_v2.0_Chr5g0020391 Rosa chinensis HOM05D000042 ORTHO05D000980 8.7e-12 73.6 82 42.7
Sp2g23890 Schrenkiella parvula HOM05D000042 ORTHO05D000980 8.7e-12 73.6 82 51.2
C07p44300 Brassica napus HOM05D000042 ORTHO05D000980 1.1e-11 73.2 82 51.2
BolC7t44953H Brassica oleracea HOM05D000042 ORTHO05D000980 1.1e-11 73.2 82 51.2
CANSAT64G1927 Cannabis sativa HOM05D000042 ORTHO05D000980 1.1e-11 73.2 68 60.3
CiPaw.09G075700 Carya illinoinensis HOM05D000042 ORTHO05D000980 1.1e-11 73.2 71 56.3
FvH4_3g12460 Fragaria vesca HOM05D000042 ORTHO05D000980 1.1e-11 73.2 82 42.7
FAN16G2530 Fragaria x ananassa HOM05D000042 ORTHO05D000980 1.1e-11 73.2 82 42.7
Sabra05G0075100 Salix brachista HOM05D000042 ORTHO05D000980 1.1e-11 73.2 74 51.4
Medtr1g038300 Medicago truncatula HOM05D000042 ORTHO05D000980 1.5e-11 72.8 74 47.3
BcaC03g18031 Brassica carinata HOM05D000042 ORTHO05D000980 1.9e-11 72.4 79 50.6
C02p60940 Brassica napus HOM05D000042 ORTHO05D000980 1.9e-11 72.4 79 50.6
BolC2t12144H Brassica oleracea HOM05D000042 ORTHO05D000980 1.9e-11 72.4 79 50.6
CsaV3_6G052910 Cucumis sativus L. HOM05D000042 ORTHO05D000980 1.9e-11 72.4 71 52.1
FAN21G1321 Fragaria x ananassa HOM05D002062 ORTHO05D000980 2.5e-11 72.0 82 42.7
Nn1g00902 Nelumbo nucifera HOM05D000042 ORTHO05D000980 2.5e-11 72.0 84 44.0
MD10G1231100 Malus domestica HOM05D000042 ORTHO05D000980 3.3e-11 71.6 71 56.3
Haze_06093 Corylus avellana HOM05D000042 ORTHO05D000980 7.3e-11 70.5 71 52.1
Psat6g099720 Pisum sativum HOM05D000042 ORTHO05D000980 7.3e-11 70.5 74 45.9
TAR426G0002 Trochodendron aralioides HOM05D000042 ORTHO05D000980 9.6e-11 70.1 84 45.2
CARHR190280 Cardamine hirsuta HOM05D000042 ORTHO05D000980 1.3e-10 69.7 82 47.6
Nn6g33854 Nelumbo nucifera HOM05D000042 ORTHO05D000980 1.3e-10 69.7 75 49.3
Carub.0006s2103 Capsella rubella HOM05D000042 ORTHO05D000980 1.6e-10 69.3 82 47.6
Ca_12406_v3 Cicer arietinum L. HOM05D000042 ORTHO05D000980 1.6e-10 69.3 74 45.9
Sed0000693 Sechium edule HOM05D000042 ORTHO05D000980 1.6e-10 69.3 71 50.7
TAR535G0002 Trochodendron aralioides HOM05D000042 ORTHO05D000980 2.1e-10 68.9 84 44.0
BcaC04g23484 Brassica carinata HOM05D000042 ORTHO05D000980 2.8e-10 68.6 75 53.3
A09p07040 Brassica napus HOM05D000042 ORTHO05D000980 2.8e-10 68.6 75 53.3
BraA09t36352Z Brassica rapa HOM05D000042 ORTHO05D000980 2.8e-10 68.6 75 53.3
BcaB04g19885 Brassica carinata HOM05D000042 ORTHO05D000980 3.6e-10 68.2 75 53.3
C09p07850 Brassica napus HOM05D000042 ORTHO05D000980 4.8e-10 67.8 75 53.3
TPR.G29778 Trifolium pratense HOM05D000042 ORTHO05D000980 6.2e-10 67.4 74 43.2
Aqoxy1G01662 Aquilegia oxysepala HOM05D000042 ORTHO05D000980 8.1e-10 67.0 71 49.3
Lj2g0025010 Lotus japonicus HOM05D000042 ORTHO05D000980 8.1e-10 67.0 71 49.3
A02p41080 Brassica napus HOM05D000042 ORTHO05D000980 1.1e-09 66.6 79 48.1
BraA02t09052Z Brassica rapa HOM05D000042 ORTHO05D000980 1.1e-09 66.6 79 48.1
TWI38G2187 Tripterygium wilfordii HOM05D000042 ORTHO05D000980 1.1e-09 66.6 69 56.5
Gohir.A13G061100 Gossypium hirsutum HOM05D000042 ORTHO05D000980 1.4e-09 66.2 82 43.9
Potri.012G125600 Populus trichocarpa HOM05D000042 ORTHO05D000980 1.4e-09 66.2 62 59.7
Dinv27271 Davidia involucrata HOM05D000042 ORTHO05D000980 2.4e-09 65.5 85 51.8
Zm00001eb233110 Zea mays HOM05D000042 ORTHO05D000980 2.4e-09 65.5 68 51.5
Dinv14682 Davidia involucrata HOM05D000042 ORTHO05D000980 4.0e-09 64.7 73 52.1
ATR0661G131 Amborella trichopoda HOM05D000042 ORTHO05D000980 5.3e-09 64.3 71 50.7
BcaB04g19883 Brassica carinata HOM05D000042 ORTHO05D000980 6.9e-09 63.9 75 50.7
AT5G23260 Arabidopsis thaliana HOM05D000042 ORTHO05D000980 9.0e-09 63.5 82 46.3
A03p46300 Brassica napus HOM05D000042 ORTHO05D000980 9.0e-09 63.5 71 54.9
BraA03t13754Z Brassica rapa HOM05D000042 ORTHO05D000980 9.0e-09 63.5 71 54.9
CANSAT56G3473 Cannabis sativa HOM05D000042 ORTHO05D000980 9.0e-09 63.5 73 56.2
Os02g0170300 Oryza sativa ssp. japonica HOM05D000042 ORTHO05D000980 1.2e-08 63.2 76 43.4
FAN25G2727 Fragaria x ananassa HOM05D000042 ORTHO05D000980 1.5e-08 62.8 58 53.4
CDE06G1415 Ceratophyllum demersum HOM05D000042 ORTHO05D000028 2.6e-08 62.0 76 42.1
Duzib132G0305 Durio zibethinus HOM05D000042 ORTHO05D000980 4.4e-08 61.2 82 41.5
COL.COLO4_10774 Corchorus olitorius HOM05D000042 ORTHO05D000980 5.8e-08 60.8 77 46.8
COL.COLO4_33054 Corchorus olitorius HOM05D000042 ORTHO05D000980 7.6e-08 60.5 82 41.5
Thhalv10005641m.g Eutrema salsugineum HOM05D000042 ORTHO05D000980 7.6e-08 60.5 82 45.1
Cfa001816 Carpinus fangiana HOM05D000042 ORTHO05D000028 2.2e-07 58.9 66 47.0
Haze_16712 Corylus avellana HOM05D000042 ORTHO05D000028 2.2e-07 58.9 66 47.0
Medtr4g102530 Medicago truncatula HOM05D000042 ORTHO05D000028 2.2e-07 58.9 67 44.8
ClCG01G025680 Citrullus lanatus HOM05D000042 ORTHO05D000980 2.9e-07 58.5 71 43.7
ECA232G1657 Erigeron canadensis HOM05D000042 ORTHO05D000028 3.8e-07 58.2 72 45.8
arahy.Tifrunner.gnm1.ann1.3Z25D4 Arachis hypogaea HOM05D000042 ORTHO05D000980 4.9e-07 57.8 59 47.5
EL10Ac3g05289 Beta vulgaris HOM05D000042 ORTHO05D000028 4.9e-07 57.8 70 42.9
HPP92_016678 Vanilla planifolia HOM05D000042 ORTHO05D000980 6.4e-07 57.4 68 45.6
MELO3C007017.2 Cucumis melo HOM05D000042 ORTHO05D000980 1.1e-06 56.6 71 43.7
TPR.G37589 Trifolium pratense HOM05D000042 ORTHO05D000028 1.1e-06 56.6 67 41.8
MELO3C022515.2 Cucumis melo HOM05D000042 ORTHO05D000028 1.4e-06 56.2 70 42.9
COL.COLO4_12653 Corchorus olitorius HOM05D000042 ORTHO05D000028 1.9e-06 55.8 66 43.9
Ah.07g205650 Amaranthus hybridus HOM05D000042 ORTHO05D000980 2.4e-06 55.5 69 39.1
CsaV3_6G006020 Cucumis sativus L. HOM05D000042 ORTHO05D000028 2.4e-06 55.5 70 42.9
TAR624G0996 Trochodendron aralioides HOM05D000042 ORTHO05D000980 2.4e-06 55.5 84 39.3
CSS0028905 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000028 4.2e-06 54.7 73 38.4
AUR62042929 Chenopodium quinoa HOM05D000042 ORTHO05D000980 4.2e-06 54.7 69 40.6
ClCG06G000230 Citrullus lanatus HOM05D000042 ORTHO05D000028 4.2e-06 54.7 70 41.4
Duzib133G1416 Durio zibethinus HOM05D000042 ORTHO05D000028 5.4e-06 54.3 66 43.9
BcaC04g21174 Brassica carinata HOM05D000042 ORTHO05D000028 7.1e-06 53.9 86 34.9
A09p27210 Brassica napus HOM05D000042 ORTHO05D000028 7.1e-06 53.9 86 34.9
C09p34540 Brassica napus HOM05D000042 ORTHO05D000028 7.1e-06 53.9 86 34.9
BolC9t56298H Brassica oleracea HOM05D000042 ORTHO05D000028 7.1e-06 53.9 86 34.9
BraA09t38290Z Brassica rapa HOM05D000042 ORTHO05D000028 7.1e-06 53.9 86 34.9
Gohir.D12G105900 Gossypium hirsutum HOM05D000042 ORTHO05D000028 7.1e-06 53.9 67 41.8
Gorai.008G115200 Gossypium raimondii HOM05D000042 ORTHO05D000028 7.1e-06 53.9 67 41.8
QL08p051133 Quercus lobata HOM05D000042 ORTHO05D000028 7.1e-06 53.9 73 38.4
MBI18_g11462_MAGBIO Magnolia biondii HOM05D000042 ORTHO05D000980 9.3e-06 53.5 59 50.8


User provided reference genes

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