Gene: AT5G23260

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G23260
  • Transcript Identifier AT5G23260.1
  • Gene Type Coding gene
  • Location Chr5 : 7836294-7838340 : positive

Gene Family Information

  • ID HOM05D000042
  • #Genes/#Species 4894/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G23260.1
  • symbol TT16
  • Alias ABS,ARABIDOPSIS BSISTER,AGL32,AGAMOUS-like 32
  • full_name TRANSPARENT TESTA16
  • uniprot Q8RYD9

Descriptions

  • Description K-box region and MADS-box transcription factor family protein
  • Computational description TRANSPARENT TESTA16 (TT16); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of cell shape, regulation of proanthocyanidin biosynthetic process, seed development, ovule development; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 21 (TAIR:AT4G37940.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0080060
IGI
Gene Ontologyintegument development1
GO:0006357
IBA
Gene Ontologyregulation of transcription by RNA polymerase II2
GO:0009908
IEA
GOA Databaseflower development
GO:0006355
IEA
GOA Databaseregulation of transcription, DNA-templated
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0051302
IGI
Gene Ontologyregulation of cell division1
GO:0045944
IEA
Gene Ontologypositive regulation of transcription by RNA polymerase II
GO:0045944
IEA
InterPropositive regulation of transcription by RNA polymerase II
GO:0048316
IMP, IGI
IEA
Gene Ontologyseed development3 4
GO:0048316
IEA
InterProseed development
GO:2000029
IMP
Gene Ontologyregulation of proanthocyanidin biosynthetic process5
GO:0008360
IMP
Gene Ontologyregulation of cell shape5
GO:0048481
IMP, IGI
Gene Ontologyplant ovule development3 4
GO:0080155
IGI
Gene Ontologyregulation of double fertilization forming a zygote and endosperm4
GO:0045595
IMP
Gene Ontologyregulation of cell differentiation1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0000978
IBA
Gene OntologyRNA polymerase II cis-regulatory region sequence-specific DNA binding2
GO:0000981
IBA
Gene OntologyDNA-binding transcription factor activity, RNA polymerase II-specific2
GO:0046983
IEA
Gene Ontologyprotein dimerization activity
GO:0046983
IEA
InterProprotein dimerization activity
GO:0000977
IEA
Gene OntologyRNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0000977
IEA
InterProRNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0003700
IMP
ISS
IEA
Gene OntologyDNA-binding transcription factor activity5 6
GO:0003700
IEA
InterProDNA-binding transcription factor activity
GO:0005515
IPI
Gene Ontologyprotein binding7

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005634
IEA
InterPronucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036879 Transcription factor, MADS-box superfamily
IPR033896 MADS MEF2-like
IPR002487 Transcription factor, K-box
IPR002100 Transcription factor, MADS-box
IPR031050 MADS-box protein FBP24/AGL63/defh21-like
Mapman id Description
15.5.14 RNA biosynthesis.transcriptional regulation.transcription factor (MADS/AGL)