Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G490.30 Capsicum annuum HOM05D005579 ORTHO05D006775 0.0e+00 2911.7 1462 100.0
Sopen03g004630 Solanum pennellii HOM05D005579 ORTHO05D006775 0.0e+00 2402.1 1466 83.5
Solyc03g025820.3 Solanum lycopersicum HOM05D005579 ORTHO05D006775 0.0e+00 2369.0 1472 82.6
Peaxi162Scf00444g00841 Petunia axillaris HOM05D005579 ORTHO05D006775 0.0e+00 2164.8 1496 75.1
Nitab4.5_0000716g0010 Nicotiana tabacum HOM05D005579 ORTHO05D006775 0.0e+00 2132.8 1470 76.3
Nitab4.5_0009681g0030 Nicotiana tabacum HOM05D005579 ORTHO05D006775 0.0e+00 2084.7 1470 74.8
Dinv28443 Davidia involucrata HOM05D005579 ORTHO05D006775 0.0e+00 1132.5 1423 47.0
PGSC0003DMG400014341 Solanum tuberosum HOM05D005579 ORTHO05D006775 0.0e+00 1100.9 670 84.0
QL09p014220 Quercus lobata HOM05D005579 ORTHO05D006775 1.9e-292 1010.0 1492 42.7
Cc02_g02990 Coffea canephora HOM05D005579 ORTHO05D006775 1.2e-278 964.1 1522 41.7
Cfa008319 Carpinus fangiana HOM05D005579 ORTHO05D006775 1.3e-272 944.1 1484 40.9
CiPaw.04G071000 Carya illinoinensis HOM05D005579 ORTHO05D006775 1.3e-272 944.1 1492 40.9
TAR367G0001 Trochodendron aralioides HOM05D005579 ORTHO05D006775 8.2e-272 941.4 1493 40.5
GSVIVG01028977001 Vitis vinifera HOM05D005579 ORTHO05D006775 5.3e-271 938.7 1590 39.4
Ciclev10006492m.g Citrus clementina HOM05D005579 ORTHO05D006775 6.3e-248 862.1 1498 38.3
CSS0017636 Camellia sinensis var. sinensis HOM05D005579 ORTHO05D006775 1.7e-245 854.0 1195 43.5
Duzib068G1336 Durio zibethinus HOM05D005579 ORTHO05D006775 5.5e-244 849.0 1492 38.5
CSS0047196 Camellia sinensis var. sinensis HOM05D005579 ORTHO05D006775 4.7e-243 845.9 1195 43.4
Actinidia32860 Actinidia chinensis HOM05D005579 ORTHO05D006775 3.1e-239 833.2 1418 39.6
Nn6g33500 Nelumbo nucifera HOM05D005579 ORTHO05D006775 3.0e-234 816.6 1480 36.8
Gohir.D12G259200 Gossypium hirsutum HOM05D005579 ORTHO05D006775 3.4e-233 813.1 1580 35.9
Sc13g0008650 Simmondsia chinensis HOM05D005579 ORTHO05D006775 6.3e-232 808.9 1497 39.2
Cpa.g.sc107.52 Carica papaya HOM05D005579 ORTHO05D006775 5.0e-229 799.3 1503 38.1
TWI23G0169 Tripterygium wilfordii HOM05D005579 ORTHO05D006775 2.3e-226 790.4 1423 37.4
COL.COLO4_14309 Corchorus olitorius HOM05D005579 ORTHO05D006775 5.7e-225 785.8 1489 36.4
Gorai.008G277600 Gossypium raimondii HOM05D005579 ORTHO05D006775 1.7e-221 774.2 1507 36.0
Sed0022815 Sechium edule HOM05D005579 ORTHO05D006775 2.8e-219 766.9 1477 36.1
DCAR_018198 Daucus carota HOM05D005579 ORTHO05D006775 3.7e-216 756.5 1498 36.8
Gohir.A12G257850 Gossypium hirsutum HOM05D005579 ORTHO05D006775 1.9e-215 754.2 1469 36.1
PGR142G3926 Punica granatum HOM05D005579 ORTHO05D006775 1.9e-215 754.2 1481 36.1
ClCG09G012930 Citrullus lanatus HOM05D005579 ORTHO05D006775 2.0e-214 750.7 1498 35.4
CsaV3_3G049940 Cucumis sativus L. HOM05D005579 ORTHO05D006775 7.3e-212 742.3 1490 35.6
Lj2g0003134 Lotus japonicus HOM05D005579 ORTHO05D006775 9.5e-212 741.9 1500 35.1
Phvul.004G117000 Phaseolus vulgaris HOM05D005579 ORTHO05D006775 2.1e-211 740.7 1488 35.3
Glyma.09G139400 Glycine max HOM05D005579 ORTHO05D006775 5.2e-202 709.5 1460 34.6
Thhalv10015364m.g Eutrema salsugineum HOM05D005579 ORTHO05D006775 3.9e-197 693.3 1511 35.3
VMungo0464G1636 Vigna mungo HOM05D005579 ORTHO05D006775 1.1e-196 691.8 1472 34.1
Psat0s2227g0080 Pisum sativum HOM05D005579 ORTHO05D006775 1.9e-196 691.0 1557 33.7
Thecc.03G176600 Theobroma cacao HOM05D005579 ORTHO05D006775 1.9e-196 691.0 1487 34.2
EL10Ac3g05643 Beta vulgaris HOM05D005579 ORTHO05D006775 1.2e-193 681.8 1478 34.1
AL8G26680 Arabidopsis lyrata HOM05D005579 ORTHO05D006775 2.6e-193 680.6 1519 34.9
Sp6g14550 Schrenkiella parvula HOM05D005579 ORTHO05D006775 2.6e-193 680.6 1511 34.5
CARHR265270 Cardamine hirsuta HOM05D005579 ORTHO05D006775 2.9e-192 677.2 1513 34.4
Migut.F00340 Erythranthe guttata HOM05D005579 ORTHO05D006775 2.9e-192 677.2 1475 35.1
AT5G52290 Arabidopsis thaliana HOM05D005579 ORTHO05D006775 7.8e-190 669.1 1512 34.5
Aa31LG3G8710 Aethionema arabicum HOM05D005579 ORTHO05D006775 9.6e-188 662.1 1507 34.2
AL271U10020 Arabidopsis lyrata HOM05D005579 ORTHO05D006775 1.6e-187 661.4 1523 33.9
Hma1.2p1_0270F.1_g108020 Hydrangea macrophylla HOM05D005579 ORTHO05D006775 6.9e-186 656.0 830 47.1
Carub.0008s1239 Capsella rubella HOM05D005579 ORTHO05D006775 3.4e-185 653.7 1529 34.9
Ah.07g207210 Amaranthus hybridus HOM05D005579 ORTHO05D006775 2.2e-184 651.0 1533 33.2
BcaB01g04199 Brassica carinata HOM05D005579 ORTHO05D006775 3.8e-184 650.2 1505 34.2
TPR.G10740 Trifolium pratense HOM05D005579 ORTHO05D006775 4.6e-182 643.3 1558 32.3
MELO3C003322.2 Cucumis melo HOM05D005579 ORTHO05D006775 1.5e-180 638.3 1493 33.7
C03p18410 Brassica napus HOM05D005579 ORTHO05D006775 1.9e-180 637.9 1514 34.1
THA.LOC104800252 Tarenaya hassleriana HOM05D005579 ORTHO05D006775 2.1e-179 634.4 1509 33.0
Rhsim03G0180800 Rhododendron simsii HOM05D005579 ORTHO05D006775 3.6e-179 633.6 1486 32.8
BcaC01g06176 Brassica carinata HOM05D005579 ORTHO05D006775 5.3e-178 629.8 1509 33.7
SalBow4G1821 Salvia bowleyana HOM05D005579 ORTHO05D006775 9.0e-178 629.0 1503 32.7
SalBow4G2278 Salvia bowleyana HOM05D005579 ORTHO05D006775 9.0e-178 629.0 1503 32.7
Medtr6g045357 Medicago truncatula HOM05D005579 ORTHO05D006775 2.6e-177 627.5 1531 31.8
Oeu056255.1 Olea europaea HOM05D005579 ORTHO05D006775 1.3e-176 625.2 848 43.6
BolC3t14238H Brassica oleracea HOM05D005579 ORTHO05D006775 7.1e-175 619.4 1569 33.1
A03p15740 Brassica napus HOM05D005579 ORTHO05D006775 1.6e-174 618.2 1511 33.7
BraA03t10864Z Brassica rapa HOM05D005579 ORTHO05D006775 3.4e-169 600.5 1559 32.6
FvH4_7g29470 Fragaria vesca HOM05D005579 ORTHO05D006775 7.1e-167 592.8 1473 32.4
Prupe.2G294300 Prunus persica HOM05D005579 ORTHO05D006775 2.1e-166 591.3 1484 31.7
Potri.012G141100 Populus trichocarpa HOM05D005579 ORTHO05D006775 1.5e-164 585.1 1495 31.6
Sabra12G0106200 Salix brachista HOM05D005579 ORTHO05D006775 6.5e-160 569.7 1490 31.3
SGA_v2.0_scaffold60G21038 Striga asiatica HOM05D005579 ORTHO05D006775 7.1e-159 566.2 1475 31.8
FAN01G1040 Fragaria x ananassa HOM05D005579 ORTHO05D006775 7.9e-158 562.8 1470 32.1
MD07G1268700 Malus domestica HOM05D005579 ORTHO05D006775 3.0e-157 560.8 1489 30.9
RcHm_v2.0_Chr1g0377251 Rosa chinensis HOM05D005579 ORTHO05D006775 6.7e-157 559.7 1456 31.7
FAN06G0670 Fragaria x ananassa HOM05D005579 ORTHO05D006775 4.3e-156 557.0 1500 30.9
Atru.chr1.458 Acer truncatum HOM05D005579 ORTHO05D006775 1.4e-154 552.0 792 42.7
CANSAT21G2370 Cannabis sativa HOM05D005579 ORTHO05D006775 2.2e-152 544.7 1464 31.2
FAN03G0333 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.1e-151 542.3 1472 32.0
FAN03G0790 Fragaria x ananassa HOM05D005579 ORTHO05D006775 5.5e-151 540.0 1493 31.7
Manes.06G147100 Manihot esculenta HOM05D005579 ORTHO05D006775 6.1e-150 536.6 1469 30.6
Haze_13712 Corylus avellana HOM05D005579 ORTHO05D006775 3.0e-149 534.3 736 44.7
FAN06G0715 Fragaria x ananassa HOM05D005579 ORTHO05D006775 2.0e-148 531.6 1437 31.1
MBI17_g46332_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 5.9e-145 520.0 1122 33.8
ECA232G1470 Erigeron canadensis HOM05D005579 ORTHO05D006775 9.1e-138 496.1 1460 30.8
MBI17_g39341_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 1.4e-133 482.3 1003 34.2
PSO063G6446 Papaver somniferum HOM05D005579 ORTHO05D006775 8.5e-128 463.0 1456 28.1
AUR62021193 Chenopodium quinoa HOM05D005579 ORTHO05D006775 1.0e-125 456.1 1485 29.8
PSO782G1268 Papaver somniferum HOM05D005579 ORTHO05D006775 5.7e-124 450.3 1455 27.9
Os02g0642600 Oryza sativa ssp. japonica HOM05D005579 ORTHO05D006775 1.3e-120 439.1 1577 27.5
HanXRQChr15g0495541 Helianthus annuus HOM05D005579 ORTHO05D006775 1.5e-119 435.6 1480 29.2
Lsat_1_v5_gn_9_55980 Lactuca sativa HOM05D005579 ORTHO05D006775 2.3e-117 428.3 1467 28.4
Lalb_Chr19g0130861 Lupinus albus HOM05D005579 ORTHO05D006775 1.3e-115 422.5 1474 28.3
AUR62015985 Chenopodium quinoa HOM05D005579 ORTHO05D006775 7.7e-113 413.3 1451 29.4
Zm00001eb248620 Zea mays HOM05D005579 ORTHO05D006775 2.9e-112 411.4 1435 27.8
FAN10G2011 Fragaria x ananassa HOM05D005579 ORTHO05D006775 5.7e-108 397.1 1043 31.6
arahy.Tifrunner.gnm1.ann1.TEHT7Q Arachis hypogaea HOM05D005579 ORTHO05D006775 4.1e-106 391.0 681 38.5
Eucgr.L01677 Eucalyptus grandis HOM05D005579 ORTHO05D006775 1.5e-103 382.5 667 38.8
arahy.Tifrunner.gnm1.ann1.Q0IWYL Arachis hypogaea HOM05D005579 ORTHO05D006775 5.2e-101 374.0 782 35.2
HPP92_008526 Vanilla planifolia HOM05D005579 ORTHO05D006775 4.1e-98 364.4 638 37.9
MD01G1200800 Malus domestica HOM05D005579 ORTHO05D006775 1.2e-97 362.8 811 33.2
ATR0680G156 Amborella trichopoda HOM05D005579 ORTHO05D006775 2.2e-91 342.0 821 33.3
Haze_13711 Corylus avellana HOM05D005579 ORTHO05D006775 2.1e-89 335.5 662 35.0
SHI39775 Sapria himalayana HOM05D005579 ORTHO05D006775 1.3e-80 306.2 703 33.7
FAN10G0535 Fragaria x ananassa HOM05D005579 ORTHO05D006775 8.7e-72 276.9 503 38.4
unitig_37.g12526 Utricularia gibba HOM05D005579 ORTHO05D006775 3.1e-69 268.5 593 34.1
CDE08G0179 Ceratophyllum demersum HOM05D005579 ORTHO05D006775 9.0e-53 213.8 594 32.7
Hund11748 Selenicereus undatus HOM05D005579 ORTHO05D006775 2.0e-44 186.0 520 32.7
Mapoly0013s0198 Marchantia polymorpha HOM05D005579 ORTHO05D006775 2.2e-43 182.6 615 27.3
Actinidia34112 Actinidia chinensis HOM05D005579 ORTHO05D006775 9.3e-42 177.2 147 61.9
SMO364G0179 Selaginella moellendorffii HOM05D005579 ORTHO05D006775 2.9e-35 155.6 233 37.3
Hund11747 Selenicereus undatus HOM05D005579 ORTHO05D006775 8.5e-35 154.1 208 41.3
MBI17_g46331_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 8.8e-32 144.1 284 33.8
Pp3c13_14750 Physcomitrium patens HOM05D005579 ORTHO05D006775 5.0e-27 128.3 224 34.8
Pp3c21_13440 Physcomitrium patens HOM05D005579 ORTHO05D006775 6.5e-27 127.9 241 34.0
CDE08G1090 Ceratophyllum demersum HOM05D005579 ORTHO05D006775 1.1e-23 117.1 169 40.2
SEGI_30883 Sequoiadendron giganteum HOM05D005579 ORTHO05D006775 1.5e-23 116.7 469 27.1
Ca_25744_v3 Cicer arietinum L. HOM05D005579 ORTHO05D006775 5.7e-23 114.8 286 30.4
Oeu024225.1 Olea europaea HOM05D002251 ORTHO05D006775 8.8e-16 90.9 366 28.4
TAR375G0314 Trochodendron aralioides HOM05D005579 ORTHO05D006775 2.9e-11 75.9 180 33.9
TPR.G17624 Trifolium pratense HOM05D005579 ORTHO05D006775 6.8e-08 64.7 137 32.1
TPR.G31959 Trifolium pratense HOM05D061576 ORTHO05D006775 2.2e-06 59.7 134 28.4


User provided reference genes

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