Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G457.2 Capsicum annuum HOM05D004857 ORTHO05D005663 0.0e+00 1095.1 558 100.0
PGSC0003DMG401015931 Solanum tuberosum HOM05D004857 ORTHO05D005663 1.6e-297 1025.4 559 93.6
Solyc07g017490.3 Solanum lycopersicum HOM05D004857 ORTHO05D005663 4.9e-294 1013.8 559 92.5
Sopen07g006280 Solanum pennellii HOM05D004857 ORTHO05D005663 8.4e-294 1013.1 559 92.3
Nitab4.5_0001114g0050 Nicotiana tabacum HOM05D004857 ORTHO05D005663 1.5e-290 1002.3 558 91.2
Nitab4.5_0002665g0010 Nicotiana tabacum HOM05D004857 ORTHO05D005663 2.4e-288 995.0 558 90.3
Dinv44702 Davidia involucrata HOM05D004857 ORTHO05D005663 1.8e-248 862.4 572 78.7
Cc06_g12730 Coffea canephora HOM05D004857 ORTHO05D005663 2.3e-246 855.5 569 79.3
Ciclev10007866m.g Citrus clementina HOM05D004857 ORTHO05D005663 2.1e-244 849.0 571 78.3
Nn7g37725 Nelumbo nucifera HOM05D004857 ORTHO05D005663 4.0e-243 844.7 569 77.7
MSTRG.19426 Avicennia marina HOM05D004857 ORTHO05D005663 6.8e-243 844.0 566 75.3
CSS0030162 Camellia sinensis var. sinensis HOM05D004857 ORTHO05D005663 2.6e-242 842.0 572 76.9
GSVIVG01015011001 Vitis vinifera HOM05D004857 ORTHO05D005663 2.6e-242 842.0 572 77.6
Gohir.A05G036200 Gossypium hirsutum HOM05D004857 ORTHO05D005663 9.8e-242 840.1 569 76.8
Thecc.09G070000 Theobroma cacao HOM05D004857 ORTHO05D005663 3.7e-241 838.2 568 76.8
TAR383G0334 Trochodendron aralioides HOM05D004857 ORTHO05D005663 6.3e-241 837.4 572 76.9
Rhsim05G0001900 Rhododendron simsii HOM05D004857 ORTHO05D005663 1.1e-240 836.6 573 76.4
Actinidia39614 Actinidia chinensis HOM05D004857 ORTHO05D005663 1.4e-240 836.3 576 76.7
Gorai.009G038200 Gossypium raimondii HOM05D004857 ORTHO05D005663 5.4e-240 834.3 569 76.6
Lj4A920T60 Lonicera japonica HOM05D004857 ORTHO05D005663 7.0e-240 833.9 578 76.6
Gohir.D05G037700 Gossypium hirsutum HOM05D004857 ORTHO05D005663 3.5e-239 831.6 569 76.4
Duzib187G1561 Durio zibethinus HOM05D004857 ORTHO05D005663 3.9e-238 828.2 567 76.2
Phvul.009G223400 Phaseolus vulgaris HOM05D004857 ORTHO05D005663 3.9e-238 828.2 568 76.8
vmacro17076 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 3.9e-238 828.2 574 76.1
Manes.16G090200 Manihot esculenta HOM05D004857 ORTHO05D005663 5.0e-238 827.8 566 77.7
VMungo1309G0172 Vigna mungo HOM05D004857 ORTHO05D005663 6.6e-238 827.4 568 76.2
arahy.Tifrunner.gnm1.ann1.N9ATPP Arachis hypogaea HOM05D004857 ORTHO05D005663 1.5e-237 826.2 582 74.9
MBI19_g37995_MAGBIO Magnolia biondii HOM05D004857 ORTHO05D005663 1.9e-237 825.9 572 75.2
Ca_02281_v3 Cicer arietinum L. HOM05D004857 ORTHO05D005663 3.3e-237 825.1 569 77.0
Eucgr.C00765 Eucalyptus grandis HOM05D004857 ORTHO05D005663 4.3e-237 824.7 574 75.6
arahy.Tifrunner.gnm1.ann1.N970BB Arachis hypogaea HOM05D004857 ORTHO05D005663 5.6e-237 824.3 582 74.9
Peaxi162Scf01184g10017 Petunia axillaris HOM05D004857 ORTHO05D005663 9.5e-237 823.5 563 78.2
CiPaw.03G200100 Carya illinoinensis HOM05D004857 ORTHO05D005663 1.2e-236 823.2 557 76.7
Psat1g138640 Pisum sativum HOM05D004857 ORTHO05D005663 1.2e-236 823.2 569 77.2
Glyma.15G183100 Glycine max HOM05D004857 ORTHO05D005663 1.6e-236 822.8 568 76.1
Duzib168G0723 Durio zibethinus HOM05D004857 ORTHO05D005663 2.8e-236 822.0 570 76.0
QL11p002992 Quercus lobata HOM05D004857 ORTHO05D005663 4.7e-236 821.2 572 75.7
vmacro03340 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 1.4e-235 819.7 591 74.6
Glyma.09G074100 Glycine max HOM05D004857 ORTHO05D005663 1.8e-235 819.3 568 76.1
Lj6g0010651 Lotus japonicus HOM05D004857 ORTHO05D005663 6.8e-235 817.4 573 76.1
Oeu041809.2 Olea europaea HOM05D004857 ORTHO05D005663 1.7e-233 812.8 629 69.6
Lalb_Chr08g0232851 Lupinus albus HOM05D004857 ORTHO05D005663 2.2e-233 812.4 574 74.9
Sabra18G0057000 Salix brachista HOM05D004857 ORTHO05D005663 2.2e-233 812.4 569 74.7
Cfa002936 Carpinus fangiana HOM05D004857 ORTHO05D005663 6.4e-233 810.8 575 74.8
COL.COLO4_21204 Corchorus olitorius HOM05D004857 ORTHO05D005663 1.4e-232 809.7 588 73.1
SalBow6G1194 Salvia bowleyana HOM05D004857 ORTHO05D005663 1.9e-232 809.3 570 75.1
Aqoxy6G02713 Aquilegia oxysepala HOM05D004857 ORTHO05D005663 4.1e-232 808.1 569 74.3
MD15G1223900 Malus domestica HOM05D004857 ORTHO05D005663 2.0e-231 805.8 575 73.4
CANSAT56G1105 Cannabis sativa HOM05D004857 ORTHO05D005663 2.7e-231 805.4 573 74.5
PGR142G2122 Punica granatum HOM05D004857 ORTHO05D005663 2.7e-231 805.4 573 74.7
Potri.018G064100 Populus trichocarpa HOM05D004857 ORTHO05D005663 6.0e-231 804.3 567 73.7
Medtr2g044200 Medicago truncatula HOM05D004857 ORTHO05D005663 7.3e-229 797.3 574 75.1
MELO3C009580.2 Cucumis melo HOM05D004857 ORTHO05D005663 1.6e-228 796.2 567 75.3
Sc08g0005030 Simmondsia chinensis HOM05D004857 ORTHO05D005663 4.7e-228 794.7 570 75.3
CsaV3_3G038370 Cucumis sativus L. HOM05D004857 ORTHO05D005663 6.8e-227 790.8 567 75.0
MD02G1102700 Malus domestica HOM05D004857 ORTHO05D005663 1.5e-226 789.6 577 72.1
TWI34G1843 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 1.5e-226 789.6 574 74.0
Actinidia30259 Actinidia chinensis HOM05D004857 ORTHO05D005663 2.0e-226 789.3 529 78.3
RcHm_v2.0_Chr2g0095991 Rosa chinensis HOM05D004857 ORTHO05D005663 5.8e-226 787.7 570 71.4
Sed0019967 Sechium edule HOM05D004857 ORTHO05D005663 7.5e-226 787.3 567 74.3
TWI32G0792 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 8.3e-225 783.9 575 73.4
CDE05G0310 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 3.5e-223 778.5 573 72.3
Hund21824 Selenicereus undatus HOM05D004857 ORTHO05D005663 1.3e-222 776.5 569 72.6
Migut.J00878 Erythranthe guttata HOM05D004857 ORTHO05D005663 1.9e-221 772.7 551 73.3
FvH4_1g09440 Fragaria vesca HOM05D004857 ORTHO05D005663 4.3e-221 771.5 570 70.2
FAN28G2840 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.2e-220 770.0 572 69.9
THA.LOC104819454 Tarenaya hassleriana HOM05D004857 ORTHO05D005663 6.2e-220 767.7 574 70.2
Lsat_1_v5_gn_5_138760 Lactuca sativa HOM05D004857 ORTHO05D005663 8.1e-220 767.3 554 73.3
FAN23G0125 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.1e-219 766.9 572 69.8
FAN26G0201 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.4e-219 766.5 572 69.9
FAN19G2563 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.8e-219 766.1 572 69.9
Oeu000275.2 Olea europaea HOM05D004857 ORTHO05D005663 3.1e-219 765.4 733 59.3
EL10Ac4g09573 Beta vulgaris HOM05D004857 ORTHO05D005663 3.7e-217 758.4 567 71.4
PSO104G0255 Papaver somniferum HOM05D004857 ORTHO05D005663 1.6e-215 753.1 577 70.9
FAN26G1404 Fragaria x ananassa HOM05D004857 ORTHO05D005663 3.5e-215 751.9 599 66.8
Sp4g07340 Schrenkiella parvula HOM05D004857 ORTHO05D005663 3.5e-215 751.9 569 69.6
ATR0681G246 Amborella trichopoda HOM05D004857 ORTHO05D005663 4.6e-215 751.5 573 70.0
SHI27983 Sapria himalayana HOM05D004857 ORTHO05D005663 1.7e-214 749.6 591 68.7
ClCG10G017920 Citrullus lanatus HOM05D004857 ORTHO05D005663 7.3e-213 744.2 671 63.0
arahy.Tifrunner.gnm1.ann1.I7JLU4 Arachis hypogaea HOM05D004857 ORTHO05D005663 8.1e-212 740.7 582 70.1
DCAR_024780 Daucus carota HOM05D004857 ORTHO05D005663 1.4e-211 740.0 536 71.6
Thhalv10001246m.g Eutrema salsugineum HOM05D004857 ORTHO05D005663 1.8e-211 739.6 570 68.6
HanXRQChr12g0355141 Helianthus annuus HOM05D004857 ORTHO05D005663 1.3e-209 733.4 563 71.0
PSO421G0319 Papaver somniferum HOM05D004857 ORTHO05D005663 1.4e-208 729.9 590 69.0
AUR62006828 Chenopodium quinoa HOM05D004857 ORTHO05D005663 2.4e-208 729.2 533 72.2
Os11g0146700 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 5.4e-208 728.0 548 69.9
Zm00001eb405000 Zea mays HOM05D004857 ORTHO05D005663 2.3e-206 722.6 567 68.8
TPR.G27074 Trifolium pratense HOM05D004857 ORTHO05D005663 3.0e-206 722.2 500 75.2
CDE05G0890 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 3.9e-206 721.8 561 68.8
Aa31LG5G9410 Aethionema arabicum HOM05D004857 ORTHO05D005663 2.8e-204 715.7 600 64.3
Prupe.7G191600 Prunus persica HOM05D004857 ORTHO05D005663 2.8e-204 715.7 518 73.7
SGA_v2.0_scaffold31G12698 Striga asiatica HOM05D004857 ORTHO05D005663 6.2e-204 714.5 504 73.2
HPP92_017869 Vanilla planifolia HOM05D004857 ORTHO05D005663 1.2e-202 710.3 564 67.4
AT2G26460 Arabidopsis thaliana HOM05D004857 ORTHO05D005663 1.4e-200 703.4 585 66.0
AUR62000486 Chenopodium quinoa HOM05D004857 ORTHO05D005663 1.4e-200 703.4 527 70.8
Carub.0004s0646 Capsella rubella HOM05D004857 ORTHO05D005663 4.2e-200 701.8 570 66.7
AL4G19270 Arabidopsis lyrata HOM05D004857 ORTHO05D005663 2.7e-199 699.1 571 66.7
BcaC07g40818 Brassica carinata HOM05D004857 ORTHO05D005663 6.0e-199 698.0 556 67.3
C08p38110 Brassica napus HOM05D004857 ORTHO05D005663 6.0e-199 698.0 556 67.3
BolC8t51386H Brassica oleracea HOM05D004857 ORTHO05D005663 6.0e-199 698.0 556 67.3
BcaB08g35315 Brassica carinata HOM05D004857 ORTHO05D005663 1.0e-198 697.2 576 64.4
A09p55180 Brassica napus HOM05D004857 ORTHO05D005663 7.3e-197 691.0 556 66.2
CARHR114530 Cardamine hirsuta HOM05D004857 ORTHO05D005663 4.8e-196 688.3 569 65.0
BraA09t40926Z Brassica rapa HOM05D004857 ORTHO05D005663 1.8e-195 686.4 556 66.0
Os12g0143400 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 2.0e-186 656.4 569 64.0
SEGI_40202 Sequoiadendron giganteum HOM05D004857 ORTHO05D005663 3.0e-182 642.5 570 62.6
Zm00001eb163350 Zea mays HOM05D004857 ORTHO05D005663 1.6e-180 636.7 486 68.9
Mapoly0117s0005 Marchantia polymorpha HOM05D004857 ORTHO05D005663 3.8e-169 599.0 573 59.0
Haze_26072 Corylus avellana HOM05D004857 ORTHO05D005663 4.3e-165 585.5 418 74.4
CBR_g41264 Chara braunii HOM05D004857 ORTHO05D005663 4.1e-139 499.2 608 50.2
SMO266G0005 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 7.2e-136 488.4 592 52.9
Cpa.g.sc82.61 Carica papaya HOM05D004857 ORTHO05D005663 8.0e-135 485.0 385 68.1
BcaB08g35309 Brassica carinata HOM05D004857 ORTHO05D005663 3.8e-129 466.1 498 54.4
BcaB08g35312 Brassica carinata HOM05D004857 ORTHO05D005663 3.8e-129 466.1 498 54.4
BcaB08g35314 Brassica carinata HOM05D004857 ORTHO05D005663 3.8e-129 466.1 498 54.4
AagrBONN_evm.TU.Sc2ySwM_344.4798 Anthoceros agrestis HOM05D004857 ORTHO05D005663 2.5e-128 463.4 473 56.0
ECA234G2807 Erigeron canadensis HOM05D000593 ORTHO05D000562 7.5e-125 451.8 346 68.8
Atru.chr7.1770 Acer truncatum HOM05D004857 ORTHO05D005663 6.0e-114 415.6 263 79.8
ECA234G1433 Erigeron canadensis HOM05D000959 ORTHO05D000775 4.0e-86 323.2 242 70.7
BcaB08g35308 Brassica carinata HOM05D004857 ORTHO05D005663 5.8e-85 319.3 257 68.1
HanXRQChr12g0354251 Helianthus annuus HOM05D004857 ORTHO05D005663 2.1e-82 310.8 543 41.8
Pp3c19_4680 Physcomitrium patens HOM05D004857 ORTHO05D005663 7.3e-80 302.4 343 51.9
Lsat_1_v5_gn_7_48600 Lactuca sativa HOM05D004857 ORTHO05D005663 1.2e-77 295.0 196 78.6
unitig_699.g19261 Utricularia gibba HOM05D004857 ORTHO05D005663 1.2e-77 295.0 331 55.3
arahy.Tifrunner.gnm1.ann1.97VZCN Arachis hypogaea HOM05D004857 ORTHO05D005663 2.4e-75 287.3 162 87.7
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 4.3e-72 276.6 156 87.8
Cpa.g.sc3709.1 Carica papaya HOM05D004857 ORTHO05D005663 2.4e-70 270.8 165 83.0
HanXRQChr12g0355211 Helianthus annuus HOM05D004857 ORTHO05D005663 5.5e-67 259.6 411 43.1
Nn2g14232 Nelumbo nucifera HOM05D004857 ORTHO05D005663 2.1e-66 257.7 194 71.1
BcaB08g35313 Brassica carinata HOM05D004857 ORTHO05D005663 1.8e-62 244.6 268 53.7
CAN.G457.3 Capsicum annuum HOM05D004857 ORTHO05D005663 1.6e-58 231.5 121 99.2
Atru.chr7.1769 Acer truncatum HOM05D004857 ORTHO05D005663 4.8e-55 219.9 167 70.1
SMO270G0035 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 7.2e-51 206.1 416 39.7
SMO270G0044 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 2.7e-50 204.1 134 75.4
TAR626G1635 Trochodendron aralioides HOM05D001862 ORTHO05D005663 6.1e-50 203.0 207 57.5
Cre16.g688750 Chlamydomonas reinhardtii HOM05D004857 ORTHO05D005663 2.6e-45 187.6 579 31.6
Lsat_1_v5_gn_5_77280 Lactuca sativa HOM05D004857 ORTHO05D005663 1.4e-43 181.8 174 59.8
Lsat_1_v5_gn_5_77300 Lactuca sativa HOM05D004857 ORTHO05D005663 8.8e-41 172.6 115 79.1
Lsat_1_v5_gn_7_48580 Lactuca sativa HOM05D004857 ORTHO05D005663 1.9e-35 154.8 221 46.2
Lsat_1_v5_gn_3_37601 Lactuca sativa HOM05D004857 ORTHO05D005663 1.5e-32 145.2 152 56.6
Dinv32013 Davidia involucrata HOM05D004857 ORTHO05D005663 5.9e-29 133.3 68 94.1
BcaB08g35310 Brassica carinata HOM05D004857 ORTHO05D005663 7.2e-27 126.3 156 48.1
CAN.G1728.2 Capsicum annuum HOM05D004857 ORTHO05D005663 1.5e-24 118.6 84 76.2
QL05p089308 Quercus lobata HOM05D004857 ORTHO05D005663 9.8e-24 115.9 67 83.6
Lsat_1_v5_gn_7_64781 Lactuca sativa HOM05D004857 ORTHO05D005663 8.3e-23 112.8 83 66.3
TPR.G21223 Trifolium pratense HOM05D004857 ORTHO05D005663 1.0e-20 105.9 58 91.4
MCO14G054 Micromonas commoda HOM05D004857 ORTHO05D005663 2.9e-20 104.4 182 40.7
Actinidia02202 Actinidia chinensis HOM05D004857 ORTHO05D005663 4.7e-18 97.1 66 74.2
Rhsim09G0048200 Rhododendron simsii HOM05D004857 ORTHO05D005663 4.4e-16 90.5 120 43.3
ECA247G2383 Erigeron canadensis HOM05D004857 ORTHO05D005663 1.7e-15 88.6 92 51.1
TAR626G1095 Trochodendron aralioides HOM05D004857 ORTHO05D005663 2.4e-14 84.7 69 71.0
PSO832G3983 Papaver somniferum HOM05D004857 ORTHO05D005663 1.2e-13 82.4 84 46.4
BcaB08g35311 Brassica carinata HOM05D004857 ORTHO05D005663 2.0e-13 81.6 134 38.1
Actinidia27556 Actinidia chinensis HOM05D004857 ORTHO05D005663 5.9e-13 80.1 53 77.4
vmacro05712 Vaccinium macrocarpon HOM05D006033 ORTHO05D005663 2.3e-12 78.2 49 79.6
CAN.G112.16 Capsicum annuum HOM05D004324 ORTHO05D004840 1.6e-10 72.0 36 91.7
vmacro12720 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 1.0e-09 69.3 63 61.9
PSO407G0399 Papaver somniferum HOM05D001929 ORTHO05D002426 2.0e-08 65.1 71 52.1
PSO541G5242 Papaver somniferum HOM05D004857 ORTHO05D005663 7.5e-08 63.2 71 50.7


User provided reference genes

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