Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G438.5 Capsicum annuum HOM05D004877 ORTHO05D005942 1.2e-189 666.4 337 100.0
PGSC0003DMG400002534 Solanum tuberosum HOM05D004877 ORTHO05D005942 3.7e-175 618.2 337 92.3
Sopen03g039700 Solanum pennellii HOM05D004877 ORTHO05D005942 4.0e-174 614.8 337 92.0
Solyc03g120880.4 Solanum lycopersicum HOM05D004877 ORTHO05D005942 1.2e-173 613.2 337 92.0
Nitab4.5_0001755g0090 Nicotiana tabacum HOM05D004877 ORTHO05D005942 5.7e-168 594.3 337 88.4
Nitab4.5_0003167g0040 Nicotiana tabacum HOM05D004877 ORTHO05D005942 1.8e-166 589.3 337 87.5
Peaxi162Scf00038g00844 Petunia axillaris HOM05D004877 ORTHO05D005942 2.2e-159 565.8 339 85.3
SalBow1G2757 Salvia bowleyana HOM05D004877 ORTHO05D005942 1.3e-143 513.5 339 76.4
SalBow2G1418 Salvia bowleyana HOM05D004877 ORTHO05D005942 1.3e-143 513.5 339 76.4
Actinidia32706 Actinidia chinensis HOM05D004877 ORTHO05D005942 1.1e-142 510.4 339 76.1
Cc04_g02700 Coffea canephora HOM05D004877 ORTHO05D005942 2.6e-141 505.8 339 76.1
CSS0014120 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 2.5e-139 499.2 336 75.0
Dinv30451 Davidia involucrata HOM05D004877 ORTHO05D005942 8.0e-138 494.2 337 74.2
Dinv37993 Davidia involucrata HOM05D004877 ORTHO05D005942 1.8e-134 483.0 340 73.8
Lj9A511G47 Lonicera japonica HOM05D004877 ORTHO05D005942 2.9e-132 475.7 340 71.2
TWI18G0989 Tripterygium wilfordii HOM05D004877 ORTHO05D005942 7.2e-131 471.1 337 71.5
QL05p020530 Quercus lobata HOM05D004877 ORTHO05D005942 1.2e-130 470.3 338 71.3
Lj3g0003786 Lotus japonicus HOM05D004877 ORTHO05D005942 1.4e-129 466.8 339 71.1
Thecc.06G097500 Theobroma cacao HOM05D004877 ORTHO05D005942 1.8e-129 466.5 337 70.9
Eucgr.J02948 Eucalyptus grandis HOM05D004877 ORTHO05D005942 3.0e-129 465.7 337 72.1
arahy.Tifrunner.gnm1.ann1.64XDM2 Arachis hypogaea HOM05D004877 ORTHO05D005942 4.0e-129 465.3 341 71.6
VMungo1080G0916 Vigna mungo HOM05D004877 ORTHO05D005942 5.2e-129 464.9 337 70.9
arahy.Tifrunner.gnm1.ann1.4Y1F7A Arachis hypogaea HOM05D004877 ORTHO05D005942 6.8e-129 464.5 341 71.6
CiPaw.01G232800 Carya illinoinensis HOM05D004877 ORTHO05D005942 6.8e-129 464.5 338 70.4
Glyma.15G018900 Glycine max HOM05D004877 ORTHO05D005942 1.2e-128 463.8 339 71.1
Glyma.13G355300 Glycine max HOM05D004877 ORTHO05D005942 2.6e-128 462.6 341 71.6
AUR62022182 Chenopodium quinoa HOM05D004877 ORTHO05D005942 1.3e-127 460.3 338 71.3
Ah.01g005680 Amaranthus hybridus HOM05D004877 ORTHO05D005942 1.7e-127 459.9 339 70.8
AUR62031885 Chenopodium quinoa HOM05D004877 ORTHO05D005942 2.8e-127 459.1 337 70.9
Ca_01157_v3 Cicer arietinum L. HOM05D004877 ORTHO05D005942 2.8e-127 459.1 339 70.5
MSTRG.22647 Avicennia marina HOM05D004877 ORTHO05D005942 8.3e-127 457.6 332 69.3
Phvul.005G167000 Phaseolus vulgaris HOM05D004877 ORTHO05D005942 8.3e-127 457.6 339 71.4
Psat5g297080 Pisum sativum HOM05D004877 ORTHO05D005942 1.8e-126 456.4 339 69.9
Duzib235G0210 Durio zibethinus HOM05D004877 ORTHO05D005942 3.1e-126 455.7 337 69.1
GSVIVG01017013001 Vitis vinifera HOM05D004877 ORTHO05D005942 7.0e-126 454.5 339 69.9
MSTRG.11036 Avicennia marina HOM05D004877 ORTHO05D005942 1.2e-125 453.8 339 70.5
CSS0036359 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 1.2e-125 453.8 340 70.3
Atru.chr1.3498 Acer truncatum HOM05D004877 ORTHO05D005942 1.6e-125 453.4 338 68.9
Manes.04G132600 Manihot esculenta HOM05D004877 ORTHO05D005942 5.9e-125 451.4 339 69.6
Gohir.A02G118600 Gossypium hirsutum HOM05D004877 ORTHO05D005942 7.7e-125 451.1 339 69.9
Lalb_Chr24g0396111 Lupinus albus HOM05D004877 ORTHO05D005942 1.7e-124 449.9 339 69.6
PGR102G2474 Punica granatum HOM05D004877 ORTHO05D005942 1.7e-124 449.9 343 70.6
Manes.11G035000 Manihot esculenta HOM05D004877 ORTHO05D005942 2.2e-124 449.5 340 69.4
Ciclev10026016m.g Citrus clementina HOM05D004877 ORTHO05D005942 2.9e-124 449.1 344 67.7
Gorai.003G063100 Gossypium raimondii HOM05D004877 ORTHO05D005942 2.9e-124 449.1 338 69.8
DCAR_016196 Daucus carota HOM05D004877 ORTHO05D005942 3.8e-124 448.7 338 68.6
Medtr2g101270 Medicago truncatula HOM05D004877 ORTHO05D005942 1.1e-123 447.2 337 68.8
Oeu001891.1 Olea europaea HOM05D004877 ORTHO05D005942 1.9e-123 446.4 337 66.8
TPR.G37257 Trifolium pratense HOM05D004877 ORTHO05D005942 1.9e-123 446.4 338 69.2
Gohir.D03G059200 Gossypium hirsutum HOM05D004877 ORTHO05D005942 3.2e-123 445.7 338 69.5
CANSAT01G3179 Cannabis sativa HOM05D004877 ORTHO05D005942 4.2e-123 445.3 339 68.1
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 4.2e-123 445.3 334 68.6
Lalb_Chr14g0373091 Lupinus albus HOM05D004877 ORTHO05D005942 5.5e-123 444.9 339 67.8
Duzib192G0168 Durio zibethinus HOM05D004877 ORTHO05D005942 7.2e-123 444.5 331 67.7
Sc10g0007240 Simmondsia chinensis HOM05D004877 ORTHO05D005942 9.4e-123 444.1 342 69.0
Sc10g0007170 Simmondsia chinensis HOM05D004877 ORTHO05D005942 2.7e-122 442.6 343 69.4
Hund06654 Selenicereus undatus HOM05D004877 ORTHO05D005942 3.0e-121 439.1 337 69.1
EL10Ac9g22101 Beta vulgaris HOM05D004877 ORTHO05D005942 5.2e-121 438.3 383 61.4
Thhalv10021095m.g Eutrema salsugineum HOM05D004877 ORTHO05D005942 5.2e-121 438.3 338 66.3
COL.COLO4_30486 Corchorus olitorius HOM05D004877 ORTHO05D005942 1.2e-120 437.2 338 68.6
Potri.001G188300 Populus trichocarpa HOM05D004877 ORTHO05D005942 9.8e-120 434.1 330 68.2
CiPaw.02G146900 Carya illinoinensis HOM05D004877 ORTHO05D005942 2.2e-119 433.0 340 67.1
Gohir.D03G059150 Gossypium hirsutum HOM05D004877 ORTHO05D005942 2.8e-119 432.6 324 70.7
MD09G1205800 Malus domestica HOM05D004877 ORTHO05D005942 3.7e-119 432.2 340 66.8
Sp3g14680 Schrenkiella parvula HOM05D004877 ORTHO05D005942 8.3e-119 431.0 339 65.8
BcaC05g28894 Brassica carinata HOM05D004877 ORTHO05D005942 1.4e-118 430.3 338 66.0
BraA05t22146Z Brassica rapa HOM05D004877 ORTHO05D005942 1.4e-118 430.3 335 65.7
Sabra01G0152700 Salix brachista HOM05D004877 ORTHO05D005942 1.4e-118 430.3 330 67.3
Rhsim08G0226300 Rhododendron simsii HOM05D004877 ORTHO05D005942 2.4e-118 429.5 349 67.9
MD17G1186700 Malus domestica HOM05D004877 ORTHO05D005942 1.2e-117 427.2 339 65.2
Prupe.3G061200 Prunus persica HOM05D004877 ORTHO05D005942 2.0e-117 426.4 339 65.2
AT3G16310 Arabidopsis thaliana HOM05D004877 ORTHO05D005942 2.7e-117 426.0 339 66.1
ClCG09G000060 Citrullus lanatus HOM05D004877 ORTHO05D005942 7.7e-117 424.5 340 65.3
Lj9A524G48 Lonicera japonica HOM05D004877 ORTHO05D005942 1.3e-116 423.7 355 64.2
THA.LOC104817965 Tarenaya hassleriana HOM05D004877 ORTHO05D005942 2.3e-116 422.9 337 63.8
AL3G29060 Arabidopsis lyrata HOM05D004877 ORTHO05D005942 2.9e-116 422.5 339 65.5
Carub.0003s1606 Capsella rubella HOM05D004877 ORTHO05D005942 6.6e-116 421.4 340 65.9
TAR636G0039 Trochodendron aralioides HOM05D004877 ORTHO05D005942 6.6e-116 421.4 337 65.6
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 1.1e-115 420.6 328 65.9
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 1.1e-115 420.6 328 65.9
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 3.3e-115 419.1 335 65.4
CsaV3_7G035410 Cucumis sativus L. HOM05D004877 ORTHO05D005942 3.3e-115 419.1 340 64.7
RcHm_v2.0_Chr2g0140061 Rosa chinensis HOM05D004877 ORTHO05D005942 3.3e-115 419.1 339 65.2
Hund00671 Selenicereus undatus HOM05D004877 ORTHO05D005942 3.3e-115 419.1 339 65.2
FAN05G1125 Fragaria x ananassa HOM05D004877 ORTHO05D005942 7.2e-115 417.9 338 64.8
Gorai.011G072600 Gossypium raimondii HOM05D004877 ORTHO05D005942 2.8e-114 416.0 337 64.4
BcaB06g25724 Brassica carinata HOM05D004877 ORTHO05D005942 4.7e-114 415.2 342 64.3
Sed0013882 Sechium edule HOM05D004877 ORTHO05D005942 4.7e-114 415.2 344 63.7
MELO3C024450.2 Cucumis melo HOM05D004877 ORTHO05D005942 6.1e-114 414.8 339 64.0
FAN09G1375 Fragaria x ananassa HOM05D004877 ORTHO05D005942 6.1e-114 414.8 339 64.6
CARHR091520 Cardamine hirsuta HOM05D004877 ORTHO05D005942 1.0e-113 414.1 331 65.6
FAN14G1716 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.8e-113 413.3 339 64.3
FvH4_6g32170 Fragaria vesca HOM05D004877 ORTHO05D005942 2.3e-113 412.9 339 64.3
Lsat_1_v5_gn_4_99980 Lactuca sativa HOM05D004877 ORTHO05D005942 4.4e-112 408.7 362 61.0
FAN02G1875 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.3e-111 407.1 339 63.7
TAR624G0319 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.4e-110 403.7 339 64.9
Gohir.A10G066900 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.8e-110 403.3 337 63.2
Gohir.D10G068000 Gossypium hirsutum HOM05D004877 ORTHO05D005942 4.6e-109 398.7 337 62.0
Nn8g39120 Nelumbo nucifera HOM05D004877 ORTHO05D005942 7.8e-109 397.9 359 59.9
MBI01_g42890_MAGBIO Magnolia biondii HOM05D004877 ORTHO05D005942 1.3e-108 397.1 340 62.9
arahy.Tifrunner.gnm1.ann1.NE95XN Arachis hypogaea HOM05D004877 ORTHO05D005942 1.7e-108 396.7 358 59.8
arahy.Tifrunner.gnm1.ann1.WG6QSW Arachis hypogaea HOM05D004877 ORTHO05D005942 1.7e-108 396.7 358 59.8
unitig_37.g12259 Utricularia gibba HOM05D004877 ORTHO05D005942 2.9e-108 396.0 317 63.4
HanXRQChr09g0275881 Helianthus annuus HOM05D004877 ORTHO05D005942 7.3e-107 391.3 353 61.2
Aqoxy7G01469 Aquilegia oxysepala HOM05D004877 ORTHO05D005942 6.2e-106 388.3 338 60.9
unitig_46.g18560 Utricularia gibba HOM05D004877 ORTHO05D005942 3.1e-105 386.0 329 60.2
Sed0014944 Sechium edule HOM05D004877 ORTHO05D005942 5.8e-104 381.7 340 59.1
PSO173G0077 Papaver somniferum HOM05D004877 ORTHO05D005942 3.5e-101 372.5 351 60.4
vmacro18867 Vaccinium macrocarpon HOM05D004877 ORTHO05D005942 1.0e-100 370.9 286 68.2
PSO832G2273 Papaver somniferum HOM05D004877 ORTHO05D005942 1.7e-100 370.2 351 60.1
CDE05G3078 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 5.2e-97 358.6 342 57.9
Cpa.g.c40702 Carica papaya HOM05D004877 ORTHO05D005942 4.9e-95 352.1 269 69.1
ECA232G1650 Erigeron canadensis HOM05D004877 ORTHO05D005942 4.1e-94 349.0 330 59.1
ATR0705G205 Amborella trichopoda HOM05D004877 ORTHO05D005942 5.2e-89 332.0 346 53.5
CDE05G1429 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 2.2e-87 326.6 340 55.0
Peaxi162Scf00894g00009 Petunia axillaris HOM05D004877 ORTHO05D005942 1.4e-86 323.9 216 76.9
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 3.1e-81 306.2 246 63.0
Haze_15830 Corylus avellana HOM05D002410 ORTHO05D002805 8.9e-81 304.7 327 53.8
Peaxi162Scf11517g00001 Petunia axillaris HOM05D004877 ORTHO05D005942 7.3e-75 285.0 193 76.2
TAR624G1397 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.6e-74 283.9 236 66.5
Migut.I00909 Erythranthe guttata HOM05D004877 ORTHO05D005942 1.1e-73 281.2 265 61.5
HanXRQChr16g0501211 Helianthus annuus HOM05D004877 ORTHO05D005942 1.5e-72 277.3 352 47.2
Haze_15829 Corylus avellana HOM05D004877 ORTHO05D005942 3.0e-68 263.1 265 52.8
arahy.Tifrunner.gnm1.ann1.XV48AZ Arachis hypogaea HOM05D004877 ORTHO05D005942 3.2e-62 243.0 185 64.3
Mapoly0014s0033 Marchantia polymorpha HOM05D004877 ORTHO05D005942 1.4e-57 227.6 354 40.7
SEGI_39894 Sequoiadendron giganteum HOM05D004877 ORTHO05D005942 2.0e-56 223.8 380 41.3
Pp3c5_15240 Physcomitrium patens HOM05D004877 ORTHO05D005942 2.2e-55 220.3 355 39.2
Pp3c6_16260 Physcomitrium patens HOM05D004877 ORTHO05D005942 2.2e-55 220.3 365 40.8
Os01g0200500 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 6.9e-49 198.7 216 50.5
Zm00001eb337990 Zea mays HOM05D004877 ORTHO05D005942 3.4e-48 196.4 345 39.4
HPP92_002859 Vanilla planifolia HOM05D004877 ORTHO05D005942 1.8e-44 184.1 216 50.5
SMO144G0168 Selaginella moellendorffii HOM05D004877 ORTHO05D005942 5.7e-43 179.1 174 50.6
Zm00001eb293750 Zea mays HOM05D004877 ORTHO05D005942 9.0e-41 171.8 373 36.2
Os05g0520100 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 3.7e-34 149.8 364 32.4
AagrBONN_evm.TU.Sc2ySwM_117.2493 Anthoceros agrestis HOM05D004877 ORTHO05D005942 1.7e-31 141.0 331 33.2
Nn2g11613 Nelumbo nucifera HOM05D004877 ORTHO05D005942 9.1e-25 118.6 110 60.9
CBR_g44943 Chara braunii HOM05D004877 ORTHO05D005942 1.0e-23 115.2 147 42.2
PSO675G8939 Papaver somniferum HOM05D004877 ORTHO05D005942 1.0e-23 115.2 143 44.8
Zm00001eb353450 Zea mays HOM05D004877 ORTHO05D005942 1.3e-23 114.8 355 30.7
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 3.8e-23 113.2 92 56.5
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 4.2e-22 109.8 92 55.4
SEGI_33810 Sequoiadendron giganteum HOM05D004877 ORTHO05D000002 4.7e-21 106.3 117 48.7
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 6.1e-21 105.9 85 60.0
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 8.0e-21 105.5 106 48.1
Nn5g29960 Nelumbo nucifera HOM05D004877 ORTHO05D005942 6.3e-18 95.9 107 56.1
Cre12.g553050 Chlamydomonas reinhardtii HOM05D004877 ORTHO05D005942 2.9e-15 87.0 149 33.6
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 3.8e-15 86.7 80 55.0
MD07G1258000 Malus domestica HOM05D004877 ORTHO05D005942 7.2e-14 82.4 54 68.5
PRCOL_00002288 Prasinoderma coloniale HOM05D004877 ORTHO05D005942 2.7e-13 80.5 144 31.9
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.4e-12 78.2 60 63.3
MD16G1217600 Malus domestica HOM05D004877 ORTHO05D005942 4.4e-11 73.2 71 47.9
Cpa.g.c43067 Carica papaya HOM05D004877 ORTHO05D005942 1.3e-10 71.6 40 80.0
Pp3c1_40780 Physcomitrium patens HOM05D004877 ORTHO05D005942 7.0e-09 65.9 168 30.4
MCO07G475 Micromonas commoda HOM05D004877 ORTHO05D005942 5.0e-07 59.7 172 28.5
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 5.0e-07 59.7 53 49.1
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 5.0e-07 59.7 42 64.3


User provided reference genes

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