Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G4.15 Capsicum annuum HOM05D000104 ORTHO05D004881 1.8e-37 158.7 76 100.0
CAN.G484.5 Capsicum annuum HOM05D000104 ORTHO05D004881 1.0e-16 89.7 58 69.0
Nitab4.5_0001925g0220 Nicotiana tabacum HOM05D000104 ORTHO05D004881 8.6e-16 86.7 57 68.4
Nitab4.5_0011766g0020 Nicotiana tabacum HOM05D000104 ORTHO05D004881 3.3e-15 84.7 42 85.7
Peaxi162Scf00062g00086 Petunia axillaris HOM05D000104 ORTHO05D004881 3.3e-15 84.7 42 85.7
Solyc12g099910.2 Solanum lycopersicum HOM05D000104 ORTHO05D004881 8.1e-14 80.1 42 81.0
Sopen12g034530 Solanum pennellii HOM05D000104 ORTHO05D004881 8.1e-14 80.1 42 81.0
Dinv36192 Davidia involucrata HOM05D000104 ORTHO05D004881 1.4e-13 79.3 59 59.3
HanXRQChr14g0433041 Helianthus annuus HOM05D000104 ORTHO05D004881 1.8e-13 79.0 56 62.5
Cc01_g05810 Coffea canephora HOM05D000104 ORTHO05D004881 3.1e-13 78.2 42 76.2
MD03G1168800 Malus domestica HOM05D000104 ORTHO05D004881 3.1e-13 78.2 57 59.6
MD11G1194800 Malus domestica HOM05D000104 ORTHO05D004881 3.1e-13 78.2 57 59.6
Dinv08770 Davidia involucrata HOM05D000104 ORTHO05D004881 4.0e-13 77.8 59 59.3
Thecc.09G243900 Theobroma cacao HOM05D000104 ORTHO05D004881 4.0e-13 77.8 56 60.7
COL.COLO4_07230 Corchorus olitorius HOM05D000104 ORTHO05D004881 6.8e-13 77.0 56 60.7
Sc09g0000930 Simmondsia chinensis HOM05D000104 ORTHO05D004881 6.8e-13 77.0 49 67.3
Actinidia16360 Actinidia chinensis HOM05D000104 ORTHO05D004881 8.9e-13 76.6 42 73.8
Cfa009834 Carpinus fangiana HOM05D000104 ORTHO05D004881 8.9e-13 76.6 59 55.9
Gohir.D09G107800 Gossypium hirsutum HOM05D000104 ORTHO05D004881 8.9e-13 76.6 71 52.1
Prupe.4G258700 Prunus persica HOM05D000104 ORTHO05D004881 1.2e-12 76.3 42 73.8
Cpa.g.sc84.18 Carica papaya HOM05D000104 ORTHO05D004881 2.0e-12 75.5 60 53.3
LjContig00049g0001527 Lotus japonicus HOM05D000104 ORTHO05D004881 2.6e-12 75.1 58 55.2
Gohir.A09G111200 Gossypium hirsutum HOM05D000104 ORTHO05D004881 3.4e-12 74.7 56 57.1
Gohir.A13G217600 Gossypium hirsutum HOM05D000104 ORTHO05D004881 3.4e-12 74.7 56 58.9
DCAR_002093 Daucus carota HOM05D000104 ORTHO05D004881 4.4e-12 74.3 56 58.9
Hund07450 Selenicereus undatus HOM05D000104 ORTHO05D004881 4.4e-12 74.3 57 56.1
Ah.06g194420 Amaranthus hybridus HOM05D000104 ORTHO05D004881 5.8e-12 73.9 70 51.4
Gohir.D13G221200 Gossypium hirsutum HOM05D000104 ORTHO05D004881 5.8e-12 73.9 56 57.1
Gorai.013G252300 Gossypium raimondii HOM05D000104 ORTHO05D004881 5.8e-12 73.9 56 57.1
Atru.chr3.2807 Acer truncatum HOM05D000104 ORTHO05D004881 7.6e-12 73.6 58 55.2
EL10Ac4g10173 Beta vulgaris HOM05D000104 ORTHO05D004881 7.6e-12 73.6 65 53.8
Haze_23201 Corylus avellana HOM05D000104 ORTHO05D004881 7.6e-12 73.6 59 52.5
TWI75G1602 Tripterygium wilfordii HOM05D000104 ORTHO05D004881 7.6e-12 73.6 42 69.0
Gorai.006G125500 Gossypium raimondii HOM05D000104 ORTHO05D004881 9.9e-12 73.2 71 50.7
Lalb_Chr10g0106391 Lupinus albus HOM05D000104 ORTHO05D004881 9.9e-12 73.2 42 69.0
Manes.01G181800 Manihot esculenta HOM05D000104 ORTHO05D004881 9.9e-12 73.2 42 71.4
Glyma.14G033600 Glycine max HOM05D000104 ORTHO05D004881 1.3e-11 72.8 42 69.0
Lj1C304T4 Lonicera japonica HOM05D000104 ORTHO05D004881 1.3e-11 72.8 42 71.4
Lalb_Chr04g0249101 Lupinus albus HOM05D000104 ORTHO05D004881 1.3e-11 72.8 42 66.7
GSVIVG01037235001 Vitis vinifera HOM05D000104 ORTHO05D004881 1.3e-11 72.8 42 69.0
Eucgr.J00717 Eucalyptus grandis HOM05D000104 ORTHO05D004881 1.7e-11 72.4 42 69.0
Medtr3g053910 Medicago truncatula HOM05D000104 ORTHO05D004881 1.7e-11 72.4 67 49.3
ECA233G4577 Erigeron canadensis HOM05D000104 ORTHO05D004881 2.2e-11 72.0 57 56.1
Glyma.02G281000 Glycine max HOM05D000104 ORTHO05D004881 2.2e-11 72.0 42 66.7
Potri.009G047800 Populus trichocarpa HOM05D000104 ORTHO05D004881 2.2e-11 72.0 58 51.7
QL01p017715 Quercus lobata HOM05D000104 ORTHO05D004881 2.2e-11 72.0 58 53.4
vmacro04008 Vaccinium macrocarpon HOM05D000104 ORTHO05D004881 2.2e-11 72.0 57 56.1
Aa31sc426G10 Aethionema arabicum HOM05D000104 ORTHO05D004881 2.9e-11 71.6 57 56.1
FAN16G2830 Fragaria x ananassa HOM05D000104 ORTHO05D004881 2.9e-11 71.6 64 50.0
RcHm_v2.0_Chr5g0050791 Rosa chinensis HOM05D000104 ORTHO05D004881 2.9e-11 71.6 59 50.8
Sabra16G0154200 Salix brachista HOM05D004400 ORTHO05D004881 2.9e-11 71.6 42 69.0
CSS0013867 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D004881 3.8e-11 71.2 54 55.6
Oeu061292.1 Olea europaea HOM05D000104 ORTHO05D004881 4.9e-11 70.9 58 53.4
Phvul.008G199800 Phaseolus vulgaris HOM05D000104 ORTHO05D004881 4.9e-11 70.9 42 66.7
Sabra09G0035000 Salix brachista HOM05D004400 ORTHO05D004881 4.9e-11 70.9 58 51.7
VMungo0647G0770 Vigna mungo HOM05D000104 ORTHO05D004881 4.9e-11 70.9 42 66.7
Aqoxy2G00308 Aquilegia oxysepala HOM05D000104 ORTHO05D004881 6.4e-11 70.5 60 55.0
Ciclev10014019m.g Citrus clementina HOM05D000104 ORTHO05D004881 6.4e-11 70.5 58 50.0
Migut.N02364 Erythranthe guttata HOM05D000104 ORTHO05D004881 6.4e-11 70.5 66 53.0
FAN21G2988 Fragaria x ananassa HOM05D000104 ORTHO05D004881 6.4e-11 70.5 57 52.6
FAN25G0427 Fragaria x ananassa HOM05D000104 ORTHO05D004881 6.4e-11 70.5 57 52.6
arahy.Tifrunner.gnm1.ann1.F2KJX5 Arachis hypogaea HOM05D000104 ORTHO05D004881 8.4e-11 70.1 42 64.3
arahy.Tifrunner.gnm1.ann1.Q1C604 Arachis hypogaea HOM05D000104 ORTHO05D004881 8.4e-11 70.1 42 64.3
PSO339G0098 Papaver somniferum HOM05D000104 ORTHO05D004881 8.4e-11 70.1 77 48.1
THA.LOC104826485 Tarenaya hassleriana HOM05D000104 ORTHO05D004881 8.4e-11 70.1 58 53.4
CiPaw.13G152700 Carya illinoinensis HOM05D000104 ORTHO05D004881 1.1e-10 69.7 42 69.0
HanXRQChr12g0357371 Helianthus annuus HOM05D000104 ORTHO05D004881 1.1e-10 69.7 58 51.7
Lsat_1_v5_gn_2_38240 Lactuca sativa HOM05D000104 ORTHO05D004881 1.4e-10 69.3 57 52.6
TAR633G1573 Trochodendron aralioides HOM05D000104 ORTHO05D004881 1.4e-10 69.3 59 54.2
CANSAT54G1548 Cannabis sativa HOM05D000104 ORTHO05D004881 1.9e-10 68.9 64 51.6
FvH4_3g28110 Fragaria vesca HOM05D000104 ORTHO05D004881 1.9e-10 68.9 57 52.6
FAN11G2466 Fragaria x ananassa HOM05D000104 ORTHO05D004881 1.9e-10 68.9 57 52.6
Hma1.2p1_1427F.1_g282920 Hydrangea macrophylla HOM05D000104 ORTHO05D004881 1.9e-10 68.9 41 70.7
PSO384G4411 Papaver somniferum HOM05D000104 ORTHO05D004881 1.9e-10 68.9 77 46.8
AUR62039837 Chenopodium quinoa HOM05D000104 ORTHO05D004881 2.4e-10 68.6 42 69.0
Nn7g36507 Nelumbo nucifera HOM05D000104 ORTHO05D004881 2.4e-10 68.6 42 69.0
Potri.001G253400 Populus trichocarpa HOM05D000104 ORTHO05D004881 2.4e-10 68.6 42 66.7
Manes.02G141700 Manihot esculenta HOM05D000104 ORTHO05D004881 3.2e-10 68.2 42 66.7
SHI27490 Sapria himalayana HOM05D000104 ORTHO05D004881 3.2e-10 68.2 58 48.3
Carub.0003s2790 Capsella rubella HOM05D000104 ORTHO05D004881 4.1e-10 67.8 57 54.4
BcaB02g11515 Brassica carinata HOM05D000104 ORTHO05D004881 7.1e-10 67.0 57 52.6
SGA_v2.0_scaffold3G01470 Striga asiatica HOM05D000104 ORTHO05D004881 9.2e-10 66.6 59 47.5
AUR62000174 Chenopodium quinoa HOM05D004400 ORTHO05D004881 1.2e-09 66.2 42 66.7
AT2G13370 Arabidopsis thaliana HOM05D000104 ORTHO05D004881 1.6e-09 65.9 57 50.9
BcaC04g23082 Brassica carinata HOM05D000104 ORTHO05D004881 1.6e-09 65.9 57 50.9
A09p10390 Brassica napus HOM05D000104 ORTHO05D004881 1.6e-09 65.9 57 50.9
BolC9t54126H Brassica oleracea HOM05D000104 ORTHO05D004881 1.6e-09 65.9 57 50.9
BraA09t36683Z Brassica rapa HOM05D000104 ORTHO05D004881 1.6e-09 65.9 57 50.9
Ca_06225_v3 Cicer arietinum L. HOM05D000104 ORTHO05D004881 1.6e-09 65.9 40 67.5
ClCG02G022980 Citrullus lanatus HOM05D000104 ORTHO05D004881 1.6e-09 65.9 42 64.3
CsaV3_6G039100 Cucumis sativus L. HOM05D000104 ORTHO05D004881 2.1e-09 65.5 42 61.9
Lj1C295T5 Lonicera japonica HOM05D000104 ORTHO05D004881 2.1e-09 65.5 38 71.1
Sp3g26880 Schrenkiella parvula HOM05D000104 ORTHO05D004881 2.7e-09 65.1 56 51.8
AL3G45270 Arabidopsis lyrata HOM05D000104 ORTHO05D004881 3.5e-09 64.7 57 50.9
Lsat_1_v5_gn_4_146300 Lactuca sativa HOM05D000104 ORTHO05D004881 3.5e-09 64.7 57 49.1
TPR.G26010 Trifolium pratense HOM05D000104 ORTHO05D004881 4.6e-09 64.3 40 65.0
MELO3C014569.2 Cucumis melo HOM05D000104 ORTHO05D004881 6.0e-09 63.9 42 61.9
Thhalv10022519m.g Eutrema salsugineum HOM05D000104 ORTHO05D004881 6.0e-09 63.9 57 49.1
Medtr5g090090 Medicago truncatula HOM05D000104 ORTHO05D004881 6.0e-09 63.9 40 62.5
C09p12330 Brassica napus HOM05D000104 ORTHO05D004881 7.8e-09 63.5 57 49.1
MBI13_g29528_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D004881 7.8e-09 63.5 56 50.0
Psat2g019640 Pisum sativum HOM05D000104 ORTHO05D004881 1.0e-08 63.2 40 62.5
PGR119G1457 Punica granatum HOM05D000104 ORTHO05D004881 1.3e-08 62.8 42 59.5
Psat5g195080 Pisum sativum HOM05D000104 ORTHO05D004881 3.9e-08 61.2 57 45.6
TAR636G3192 Trochodendron aralioides HOM05D000104 ORTHO05D004881 5.1e-08 60.8 42 61.9
Sed0002979 Sechium edule HOM05D000104 ORTHO05D004881 8.7e-08 60.1 42 57.1
CSS0005534 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D004881 3.3e-07 58.2 32 68.8
ATR0721G152 Amborella trichopoda HOM05D000104 ORTHO05D004881 8.1e-06 53.5 56 42.9


User provided reference genes

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