Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G395.47 Capsicum annuum HOM05D005526 ORTHO05D006802 2.6e-49 198.4 98 100.0
Nitab4.5_0000620g0060 Nicotiana tabacum HOM05D005526 ORTHO05D006802 1.0e-21 106.7 56 89.3
Sopen06g025280 Solanum pennellii HOM05D005526 ORTHO05D006802 1.3e-19 99.8 49 95.9
Nitab4.5_0013710g0010 Nicotiana tabacum HOM05D005526 ORTHO05D006802 6.3e-19 97.4 52 90.4
PGSC0003DMG401028513 Solanum tuberosum HOM05D005526 ORTHO05D006802 8.2e-19 97.1 48 97.9
Rhsim12G0193000 Rhododendron simsii HOM05D005526 ORTHO05D006802 2.0e-17 92.4 49 87.8
Peaxi162Scf00207g00731 Petunia axillaris HOM05D005526 ORTHO05D006802 4.5e-17 91.3 47 91.5
CSS0009710 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 5.9e-17 90.9 55 80.0
vmacro16915 Vaccinium macrocarpon HOM05D005526 ORTHO05D006802 7.7e-17 90.5 47 89.4
Lj5A68T70 Lonicera japonica HOM05D005526 ORTHO05D006802 1.0e-16 90.1 50 82.0
Oeu052283.1 Olea europaea HOM05D005526 ORTHO05D006802 8.5e-16 87.0 56 73.2
Cc04_g04010 Coffea canephora HOM05D005526 ORTHO05D006802 2.5e-15 85.5 49 85.7
Solyc06g067990.3 Solanum lycopersicum HOM05D005526 ORTHO05D006802 3.2e-15 85.1 41 97.6
CSS0037293 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 5.5e-15 84.3 45 86.7
SGA_v2.0_scaffold16G07615 Striga asiatica HOM05D005526 ORTHO05D006802 1.2e-14 83.2 47 85.1
Actinidia08810 Actinidia chinensis HOM05D005526 ORTHO05D006802 2.1e-14 82.4 44 88.6
Dinv30571 Davidia involucrata HOM05D005526 ORTHO05D006802 2.7e-14 82.0 56 71.4
Dinv38097 Davidia involucrata HOM05D005526 ORTHO05D006802 2.7e-14 82.0 56 71.4
DCAR_025483 Daucus carota HOM05D005526 ORTHO05D006802 3.6e-14 81.6 44 88.6
SGA_v2.0_scaffold37G14789 Striga asiatica HOM05D005526 ORTHO05D006802 3.6e-14 81.6 48 81.2
ECA234G2940 Erigeron canadensis HOM05D005526 ORTHO05D006802 8.0e-14 80.5 44 86.4
HanXRQChr10g0303081 Helianthus annuus HOM05D005526 ORTHO05D006802 8.0e-14 80.5 48 83.3
MSTRG.9436 Avicennia marina HOM05D005526 ORTHO05D006802 1.4e-13 79.7 44 86.4
Lalb_Chr14g0373671 Lupinus albus HOM05D005526 ORTHO05D006802 1.8e-13 79.3 62 64.5
Lsat_1_v5_gn_5_132520 Lactuca sativa HOM05D005526 ORTHO05D006802 2.3e-13 79.0 40 90.0
SalBow2G2365 Salvia bowleyana HOM05D005526 ORTHO05D006802 3.0e-13 78.6 44 84.1
TPR.G37278 Trifolium pratense HOM05D005526 ORTHO05D006802 3.0e-13 78.6 50 76.0
GSVIVG01017250001 Vitis vinifera HOM05D005526 ORTHO05D006802 5.2e-13 77.8 48 77.1
BcaC08g45297 Brassica carinata HOM05D005526 ORTHO05D006802 6.8e-13 77.4 57 63.2
Oeu014842.2 Olea europaea HOM05D005526 ORTHO05D006802 6.8e-13 77.4 44 84.1
QL05p027824 Quercus lobata HOM05D005526 ORTHO05D006802 6.8e-13 77.4 49 75.5
A07p26570 Brassica napus HOM05D005526 ORTHO05D006802 8.8e-13 77.0 57 66.7
ClCG07G012810 Citrullus lanatus HOM05D005526 ORTHO05D006802 2.6e-12 75.5 47 76.6
Migut.D01055 Erythranthe guttata HOM05D005526 ORTHO05D006802 3.4e-12 75.1 44 81.8
MD09G1221000 Malus domestica HOM05D005526 ORTHO05D006802 3.4e-12 75.1 49 73.5
BcaB02g07290 Brassica carinata HOM05D005526 ORTHO05D006802 4.4e-12 74.7 51 70.6
C06p28990 Brassica napus HOM05D005526 ORTHO05D006802 5.7e-12 74.3 47 74.5
BolC6t38065H Brassica oleracea HOM05D005526 ORTHO05D006802 5.7e-12 74.3 47 74.5
Haze_16512 Corylus avellana HOM05D005526 ORTHO05D006802 5.7e-12 74.3 46 78.3
Aa31LG4G500 Aethionema arabicum HOM05D005526 ORTHO05D006802 1.7e-11 72.8 47 72.3
Aqoxy7G02084 Aquilegia oxysepala HOM05D005526 ORTHO05D006802 2.2e-11 72.4 44 77.3
AUR62011560 Chenopodium quinoa HOM05D005526 ORTHO05D006802 2.2e-11 72.4 56 64.3
MBI01_g11875_MAGBIO Magnolia biondii HOM05D005526 ORTHO05D006802 2.8e-11 72.0 49 71.4
Cpa.g.sc336.8 Carica papaya HOM05D005526 ORTHO05D006802 3.7e-11 71.6 49 69.4
Cfa002011 Carpinus fangiana HOM05D005526 ORTHO05D006802 3.7e-11 71.6 44 77.3
CiPaw.01G244400 Carya illinoinensis HOM05D005526 ORTHO05D006802 3.7e-11 71.6 44 77.3
CDE01G0292 Ceratophyllum demersum HOM05D005526 ORTHO05D006802 3.7e-11 71.6 56 64.3
CDE02G1452 Ceratophyllum demersum HOM05D005526 ORTHO05D006802 3.7e-11 71.6 56 64.3
Manes.04G116500 Manihot esculenta HOM05D005526 ORTHO05D006802 3.7e-11 71.6 44 77.3
Sed0002477 Sechium edule HOM05D005526 ORTHO05D006802 3.7e-11 71.6 45 75.6
RcHm_v2.0_Chr2g0136631 Rosa chinensis HOM05D005526 ORTHO05D006802 4.8e-11 71.2 49 67.3
TAR383G0281 Trochodendron aralioides HOM05D005526 ORTHO05D006802 4.8e-11 71.2 44 77.3
Ca_01085_v3 Cicer arietinum L. HOM05D005526 ORTHO05D006802 6.3e-11 70.9 44 77.3
Glyma.13G363400 Glycine max HOM05D005526 ORTHO05D006802 6.3e-11 70.9 44 77.3
Lj3g0017842 Lotus japonicus HOM05D005526 ORTHO05D006802 6.3e-11 70.9 44 77.3
Medtr2g103110 Medicago truncatula HOM05D005526 ORTHO05D006802 6.3e-11 70.9 44 77.3
Sabra01G0138900 Salix brachista HOM05D005526 ORTHO05D006802 6.3e-11 70.9 49 67.3
TWI18G0833 Tripterygium wilfordii HOM05D005526 ORTHO05D006802 6.3e-11 70.9 44 75.0
TWI75G1755 Tripterygium wilfordii HOM05D005526 ORTHO05D006802 6.3e-11 70.9 44 75.0
Atru.chr1.3093 Acer truncatum HOM05D005526 ORTHO05D006802 8.3e-11 70.5 56 60.7
CsaV3_4G001390 Cucumis sativus L. HOM05D005526 ORTHO05D006802 1.1e-10 70.1 44 75.0
FAN05G1558 Fragaria x ananassa HOM05D005526 ORTHO05D006802 1.1e-10 70.1 46 71.7
THA.LOC104812497 Tarenaya hassleriana HOM05D005526 ORTHO05D006802 1.1e-10 70.1 44 75.0
AagrBONN_evm.TU.Sc2ySwM_368.2432 Anthoceros agrestis HOM05D005526 ORTHO05D006802 1.4e-10 69.7 46 69.6
Ciclev10025661m.g Citrus clementina HOM05D005526 ORTHO05D006802 1.4e-10 69.7 44 72.7
PSO170G3249 Papaver somniferum HOM05D005526 ORTHO05D006802 1.4e-10 69.7 44 75.0
Phvul.005G174900 Phaseolus vulgaris HOM05D005526 ORTHO05D006802 1.4e-10 69.7 44 75.0
Glyma.15G010400 Glycine max HOM05D005526 ORTHO05D006802 1.8e-10 69.3 44 75.0
Thhalv10018648m.g Eutrema salsugineum HOM05D005526 ORTHO05D006802 3.1e-10 68.6 44 72.7
PGR031G1627 Punica granatum HOM05D005526 ORTHO05D006802 4.1e-10 68.2 44 70.5
ATR1156G076 Amborella trichopoda HOM05D005526 ORTHO05D006802 5.4e-10 67.8 47 70.2
CiPaw.02G154800 Carya illinoinensis HOM05D005526 ORTHO05D006802 5.4e-10 67.8 44 72.7
Prupe.3G079900 Prunus persica HOM05D005526 ORTHO05D006802 5.4e-10 67.8 44 72.7
CANSAT56G0953 Cannabis sativa HOM05D005526 ORTHO05D006802 7.0e-10 67.4 52 65.4
Duzib235G1092 Durio zibethinus HOM05D005526 ORTHO05D006802 7.0e-10 67.4 44 70.5
Gohir.A06G112600 Gossypium hirsutum HOM05D005526 ORTHO05D006802 7.0e-10 67.4 44 70.5
Gohir.D06G117200 Gossypium hirsutum HOM05D005526 ORTHO05D006802 7.0e-10 67.4 44 70.5
Gorai.010G134800 Gossypium raimondii HOM05D005526 ORTHO05D006802 7.0e-10 67.4 44 70.5
Sp5g35600 Schrenkiella parvula HOM05D005526 ORTHO05D006802 7.0e-10 67.4 44 70.5
Thecc.06G073100 Theobroma cacao HOM05D005526 ORTHO05D006802 7.0e-10 67.4 44 70.5
FvH4_6g30340 Fragaria vesca HOM05D005526 ORTHO05D006802 9.1e-10 67.0 44 70.5
FAN02G2127 Fragaria x ananassa HOM05D005526 ORTHO05D006802 9.1e-10 67.0 44 70.5
Nn2g11952 Nelumbo nucifera HOM05D005526 ORTHO05D006802 9.1e-10 67.0 44 72.7
Hund06580 Selenicereus undatus HOM05D005526 ORTHO05D006802 9.1e-10 67.0 45 71.1
Sc10g0005720 Simmondsia chinensis HOM05D005526 ORTHO05D006802 1.2e-09 66.6 42 73.8
MD17G1204400 Malus domestica HOM05D005526 ORTHO05D006802 1.6e-09 66.2 40 80.0
AT3G06820 Arabidopsis thaliana HOM05D005526 ORTHO05D006802 3.5e-09 65.1 45 68.9
Potri.001G172800 Populus trichocarpa HOM05D005526 ORTHO05D006802 3.5e-09 65.1 44 68.2
Gohir.A10G140700 Gossypium hirsutum HOM05D000009 ORTHO05D000008 4.5e-09 64.7 41 73.2
SEGI_35764 Sequoiadendron giganteum HOM05D005526 ORTHO05D006802 5.9e-09 64.3 44 65.9
Ah.01g020810 Amaranthus hybridus HOM05D005526 ORTHO05D006802 7.7e-09 63.9 55 54.5
CARHR074270 Cardamine hirsuta HOM05D005526 ORTHO05D006802 7.7e-09 63.9 45 68.9
AUR62016379 Chenopodium quinoa HOM05D005526 ORTHO05D006802 7.7e-09 63.9 44 68.2
Eucgr.J03045 Eucalyptus grandis HOM05D005526 ORTHO05D006802 7.7e-09 63.9 41 73.2
Os05g0542600 Oryza sativa ssp. japonica HOM05D005526 ORTHO05D006802 6.5e-08 60.8 44 61.4
arahy.Tifrunner.gnm1.ann1.FYL3MV Arachis hypogaea HOM05D005526 ORTHO05D006802 8.5e-08 60.5 45 68.9
arahy.Tifrunner.gnm1.ann1.IMA97E Arachis hypogaea HOM05D005526 ORTHO05D006802 8.5e-08 60.5 45 68.9
AT1G80210 Arabidopsis thaliana HOM05D005526 ORTHO05D006802 1.1e-07 60.1 45 64.4
Pp3c27_4740 Physcomitrium patens HOM05D005526 ORTHO05D006802 1.1e-07 60.1 44 59.1
VMungo1080G0636 Vigna mungo HOM05D005526 ORTHO05D006802 1.1e-07 60.1 44 63.6
EL10Ac9g21940 Beta vulgaris HOM05D005526 ORTHO05D006802 1.5e-07 59.7 40 65.0
Mapoly0053s0043 Marchantia polymorpha HOM05D005526 ORTHO05D006802 1.5e-07 59.7 44 61.4
Zm00001eb294490 Zea mays HOM05D005526 ORTHO05D006802 1.2e-06 56.6 52 53.8
CBR_g46861 Chara braunii HOM05D005526 ORTHO05D006802 2.7e-06 55.5 44 56.8
Zm00001eb342510 Zea mays HOM05D005526 ORTHO05D006802 3.6e-06 55.1 52 51.9


User provided reference genes

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