Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G326.2 Capsicum annuum HOM05D003688 ORTHO05D004338 6.8e-207 723.8 370 100.0
Solyc09g010830.4 Solanum lycopersicum HOM05D003688 ORTHO05D004338 3.5e-163 578.6 342 87.4
Sopen09g005560 Solanum pennellii HOM05D003688 ORTHO05D004338 1.3e-162 576.6 342 87.4
Nitab4.5_0006677g0040 Nicotiana tabacum HOM05D003688 ORTHO05D004338 5.6e-161 571.2 353 84.4
Nitab4.5_0003845g0030 Nicotiana tabacum HOM05D003688 ORTHO05D004338 8.1e-160 567.4 365 81.6
Peaxi162Scf00165g01216 Petunia axillaris HOM05D003688 ORTHO05D004338 1.5e-153 546.6 353 79.9
Peaxi162Scf00094g01313 Petunia axillaris HOM05D003688 ORTHO05D004338 2.5e-145 519.2 353 76.2
Solyc10g084760.3 Solanum lycopersicum HOM05D003688 ORTHO05D004338 3.8e-141 505.4 361 72.9
Sopen10g034210 Solanum pennellii HOM05D003688 ORTHO05D004338 3.4e-134 482.3 361 70.4
CAN.G324.6 Capsicum annuum HOM05D003688 ORTHO05D004338 1.4e-130 470.3 353 69.4
Nitab4.5_0000202g0100 Nicotiana tabacum HOM05D003688 ORTHO05D004338 1.4e-127 460.3 353 68.3
Nitab4.5_0000216g0310 Nicotiana tabacum HOM05D003688 ORTHO05D004338 6.9e-127 458.0 353 68.3
Cc06_g02620 Coffea canephora HOM05D003688 ORTHO05D004338 1.0e-125 454.1 368 64.7
Dinv35601 Davidia involucrata HOM05D003688 ORTHO05D004338 2.5e-124 449.5 364 65.4
Actinidia11259 Actinidia chinensis HOM05D003688 ORTHO05D004338 4.1e-119 432.2 364 64.0
MSTRG.10258 Avicennia marina HOM05D003688 ORTHO05D004338 7.0e-119 431.4 361 62.9
Lj3C967G6 Lonicera japonica HOM05D003688 ORTHO05D004338 2.2e-117 426.4 350 63.7
SalBow4G0433 Salvia bowleyana HOM05D003688 ORTHO05D004338 4.2e-116 422.2 356 60.7
HanXRQChr04g0125101 Helianthus annuus HOM05D003688 ORTHO05D004338 5.5e-116 421.8 354 64.4
vmacro20159 Vaccinium macrocarpon HOM05D003688 ORTHO05D004338 2.1e-115 419.9 361 61.8
CSS0020509 Camellia sinensis var. sinensis HOM05D003688 ORTHO05D004338 6.1e-115 418.3 364 62.9
Rhsim05G0193000 Rhododendron simsii HOM05D003688 ORTHO05D004338 6.1e-115 418.3 361 62.3
GSVIVG01034169001 Vitis vinifera HOM05D003688 ORTHO05D004338 8.0e-115 417.9 366 61.7
Migut.L01946 Erythranthe guttata HOM05D003688 ORTHO05D004338 3.3e-113 412.5 324 65.1
SGA_v2.0_scaffold35G14236 Striga asiatica HOM05D003688 ORTHO05D004338 4.4e-113 412.1 361 59.8
SGA_v2.0_scaffold94G28599 Striga asiatica HOM05D003688 ORTHO05D004338 2.2e-112 409.8 361 60.4
Prupe.6G255500 Prunus persica HOM05D003688 ORTHO05D004338 8.2e-112 407.9 364 60.2
Hma1.2p1_1899F.1_g306950 Hydrangea macrophylla HOM05D003688 ORTHO05D004338 1.1e-111 407.5 364 60.4
Oeu036138.2 Olea europaea HOM05D003688 ORTHO05D004338 5.3e-111 405.2 361 60.7
CANSAT35G0056 Cannabis sativa HOM05D003688 ORTHO05D004338 1.6e-110 403.7 364 59.3
DCAR_009228 Daucus carota HOM05D003688 ORTHO05D004338 2.2e-109 399.8 364 59.1
MD12G1142100 Malus domestica HOM05D003688 ORTHO05D004338 5.0e-109 398.7 336 61.9
FAN05G2232 Fragaria x ananassa HOM05D003688 ORTHO05D004338 1.1e-108 397.5 363 60.9
Sc20g0004890 Simmondsia chinensis HOM05D003688 ORTHO05D004338 1.1e-108 397.5 344 60.5
MD04G1129300 Malus domestica HOM05D003688 ORTHO05D004338 1.5e-108 397.1 364 59.1
Manes.09G091838 Manihot esculenta HOM05D003688 ORTHO05D004338 3.2e-108 396.0 364 59.3
Atru.chr8.1978 Acer truncatum HOM05D003688 ORTHO05D004338 4.2e-108 395.6 371 58.2
QL07p048346 Quercus lobata HOM05D003688 ORTHO05D004338 5.5e-108 395.2 364 59.6
FAN09G1807 Fragaria x ananassa HOM05D003688 ORTHO05D004338 1.6e-107 393.7 363 60.3
Cpa.g.sc228.14 Carica papaya HOM05D003688 ORTHO05D004338 4.7e-107 392.1 354 59.3
Lsat_1_v5_gn_8_81981 Lactuca sativa HOM05D003688 ORTHO05D004338 4.7e-107 392.1 351 63.2
Cfa017377 Carpinus fangiana HOM05D003688 ORTHO05D004338 8.0e-107 391.3 371 58.5
TWI74G1144 Tripterygium wilfordii HOM05D003688 ORTHO05D004338 8.0e-107 391.3 371 58.0
AUR62014948 Chenopodium quinoa HOM05D003688 ORTHO05D004338 1.8e-106 390.2 356 57.9
Medtr7g061540 Medicago truncatula HOM05D003688 ORTHO05D004338 2.3e-106 389.8 355 60.3
FAN02G2694 Fragaria x ananassa HOM05D003688 ORTHO05D004338 3.0e-106 389.4 355 60.8
Lalb_Chr03g0042261 Lupinus albus HOM05D003688 ORTHO05D004338 3.0e-106 389.4 336 61.3
FAN14G0142 Fragaria x ananassa HOM05D003688 ORTHO05D004338 4.0e-106 389.0 335 62.7
Glyma.07G132300 Glycine max HOM05D003688 ORTHO05D004338 5.2e-106 388.7 354 59.6
ClCG10G021160 Citrullus lanatus HOM05D003688 ORTHO05D004338 1.5e-105 387.1 357 56.9
Lalb_Chr01g0022521 Lupinus albus HOM05D003688 ORTHO05D004338 1.5e-105 387.1 364 58.5
Glyma.18G181200 Glycine max HOM05D003688 ORTHO05D004338 3.4e-105 386.0 353 59.2
arahy.Tifrunner.gnm1.ann1.N5BDHI Arachis hypogaea HOM05D003688 ORTHO05D004338 4.4e-105 385.6 366 59.3
FvH4_6g13660 Fragaria vesca HOM05D003688 ORTHO05D004338 5.7e-105 385.2 335 61.8
arahy.Tifrunner.gnm1.ann1.VY3GX3 Arachis hypogaea HOM05D003688 ORTHO05D004338 9.8e-105 384.4 366 59.0
MELO3C009256.2 Cucumis melo HOM05D003688 ORTHO05D004338 9.8e-105 384.4 357 57.1
EL10Ac9g22598 Beta vulgaris HOM05D003688 ORTHO05D004338 1.3e-104 384.0 357 59.1
RcHm_v2.0_Chr3g0466531 Rosa chinensis HOM05D003688 ORTHO05D004338 2.8e-104 382.9 363 58.7
PGR004G0645 Punica granatum HOM05D003688 ORTHO05D004338 3.7e-104 382.5 332 60.8
Phvul.008G106950 Phaseolus vulgaris HOM05D003688 ORTHO05D004338 6.3e-104 381.7 341 60.1
Haze_20793 Corylus avellana HOM05D003688 ORTHO05D004338 3.1e-103 379.4 364 57.7
HanXRQChr06g0177081 Helianthus annuus HOM05D003688 ORTHO05D004338 5.4e-103 378.6 340 61.2
Thecc.05G039500 Theobroma cacao HOM05D003688 ORTHO05D004338 5.4e-103 378.6 359 56.0
TWI77G0691 Tripterygium wilfordii HOM05D003688 ORTHO05D004338 1.2e-102 377.5 371 56.1
AUR62029194 Chenopodium quinoa HOM05D003688 ORTHO05D004338 4.5e-102 375.6 342 58.2
Potri.006G085700 Populus trichocarpa HOM05D003688 ORTHO05D004338 4.5e-102 375.6 364 58.0
TAR369G0630 Trochodendron aralioides HOM05D003688 ORTHO05D004338 1.0e-101 374.4 379 55.7
Duzib106G0690 Durio zibethinus HOM05D003688 ORTHO05D004338 2.5e-100 369.8 364 55.5
HanXRQChr06g0179281 Helianthus annuus HOM05D003688 ORTHO05D004338 2.5e-100 369.8 345 58.3
CiPaw.10G145700 Carya illinoinensis HOM05D003688 ORTHO05D004338 5.5e-100 368.6 364 57.1
ECA236G0128 Erigeron canadensis HOM05D003688 ORTHO05D004338 9.4e-100 367.9 340 60.0
Gohir.D09G151400 Gossypium hirsutum HOM05D003688 ORTHO05D004338 1.2e-99 367.5 365 53.7
Lj1g0008992 Lotus japonicus HOM05D003688 ORTHO05D004338 1.2e-99 367.5 364 56.6
Sed0016820 Sechium edule HOM05D003688 ORTHO05D004338 1.2e-99 367.5 366 53.8
Gohir.A09G155900 Gossypium hirsutum HOM05D003688 ORTHO05D004338 2.1e-99 366.7 365 54.0
Nn2g11106 Nelumbo nucifera HOM05D003688 ORTHO05D004338 2.1e-99 366.7 379 54.1
Psat3g140000 Pisum sativum HOM05D003688 ORTHO05D004338 2.1e-99 366.7 370 55.9
TAR623G0018 Trochodendron aralioides HOM05D003688 ORTHO05D004338 2.1e-99 366.7 338 60.1
Ca_07551_v3 Cicer arietinum L. HOM05D003688 ORTHO05D004338 2.7e-99 366.3 364 58.2
Gorai.006G172700 Gossypium raimondii HOM05D003688 ORTHO05D004338 8.0e-99 364.8 365 53.4
Sabra06G0065100 Salix brachista HOM05D003688 ORTHO05D004338 1.4e-98 364.0 364 57.7
TPR.G23256 Trifolium pratense HOM05D003688 ORTHO05D004338 1.2e-97 360.9 357 57.4
CsaV3_3G034880 Cucumis sativus L. HOM05D003688 ORTHO05D004338 2.0e-97 360.1 358 54.2
Sed0022373 Sechium edule HOM05D003688 ORTHO05D004338 1.3e-96 357.5 357 53.8
MBI14_g36919_MAGBIO Magnolia biondii HOM05D003688 ORTHO05D004338 1.1e-95 354.4 363 55.4
Duzib128G0151 Durio zibethinus HOM05D003688 ORTHO05D004338 1.2e-94 350.9 359 54.3
MBI14_g20100_MAGBIO Magnolia biondii HOM05D003688 ORTHO05D004338 1.3e-93 347.4 359 55.2
Eucgr.A01266 Eucalyptus grandis HOM05D003688 ORTHO05D004338 1.5e-92 344.0 330 57.0
Gohir.A01G222300 Gossypium hirsutum HOM05D003688 ORTHO05D004338 2.8e-91 339.7 359 52.9
Gorai.001G249500 Gossypium raimondii HOM05D003688 ORTHO05D004338 8.0e-91 338.2 359 52.6
THA.LOC104816269 Tarenaya hassleriana HOM05D003688 ORTHO05D004338 2.3e-90 336.7 337 55.2
Gohir.D01G211800 Gossypium hirsutum HOM05D003688 ORTHO05D004338 6.8e-90 335.1 359 52.4
Gorai.002G257600 Gossypium raimondii HOM05D003688 ORTHO05D004338 1.2e-89 334.3 359 52.4
Gohir.D13G098600 Gossypium hirsutum HOM05D003688 ORTHO05D004338 4.4e-89 332.4 284 60.2
HPP92_012595 Vanilla planifolia HOM05D003688 ORTHO05D004338 9.8e-89 331.3 330 57.6
PSO151G0112 Papaver somniferum HOM05D003688 ORTHO05D004338 3.7e-88 329.3 353 53.8
Gohir.A13G093100 Gossypium hirsutum HOM05D003688 ORTHO05D004338 8.3e-88 328.2 333 53.2
Sp6g40140 Schrenkiella parvula HOM05D003688 ORTHO05D004338 1.1e-87 327.8 370 51.1
Aa31LG1G22450 Aethionema arabicum HOM05D003688 ORTHO05D004338 5.4e-87 325.5 349 50.7
Zm00001eb124390 Zea mays HOM05D003688 ORTHO05D004338 9.2e-87 324.7 354 52.8
PSO339G2612 Papaver somniferum HOM05D003688 ORTHO05D004338 2.7e-86 323.2 354 53.1
A10p33320 Brassica napus HOM05D003688 ORTHO05D004338 3.5e-86 322.8 348 52.9
AL6G11560 Arabidopsis lyrata HOM05D003688 ORTHO05D004338 1.7e-85 320.5 363 51.2
BcaNung02121 Brassica carinata HOM05D003688 ORTHO05D004338 1.7e-85 320.5 333 53.5
C09p74230 Brassica napus HOM05D003688 ORTHO05D004338 1.7e-85 320.5 333 53.5
BraA10t45363Z Brassica rapa HOM05D003688 ORTHO05D004338 1.7e-85 320.5 348 52.6
Carub.0006s0114 Capsella rubella HOM05D003688 ORTHO05D004338 3.9e-85 319.3 333 54.1
Thhalv10012411m.g Eutrema salsugineum HOM05D003688 ORTHO05D004338 3.9e-85 319.3 372 51.1
BcaC06g31982 Brassica carinata HOM05D003688 ORTHO05D004338 1.5e-84 317.4 342 52.3
BcaB01g06158 Brassica carinata HOM05D003688 ORTHO05D004338 5.6e-84 315.5 333 52.6
AT5G02310 Arabidopsis thaliana HOM05D003688 ORTHO05D004338 1.6e-83 313.9 333 52.6
Aqoxy2G02133 Aquilegia oxysepala HOM05D003688 ORTHO05D004338 2.1e-83 313.5 350 51.1
C03p00900 Brassica napus HOM05D003688 ORTHO05D004338 3.6e-83 312.8 333 52.3
AUR62029189 Chenopodium quinoa HOM05D003688 ORTHO05D004338 3.6e-83 312.8 361 49.6
ATR0559G162 Amborella trichopoda HOM05D003688 ORTHO05D004338 4.7e-83 312.4 395 47.1
C02p00430 Brassica napus HOM05D003688 ORTHO05D004338 1.0e-82 311.2 364 50.0
BolC2t06043H Brassica oleracea HOM05D003688 ORTHO05D004338 1.0e-82 311.2 364 50.0
A03p00630 Brassica napus HOM05D003688 ORTHO05D004338 1.4e-82 310.8 333 52.9
BolC3t12653H Brassica oleracea HOM05D003688 ORTHO05D004338 1.4e-82 310.8 333 52.3
BraA03t09453Z Brassica rapa HOM05D003688 ORTHO05D004338 1.4e-82 310.8 333 52.9
BraA02t04715Z Brassica rapa HOM05D003688 ORTHO05D004338 5.2e-82 308.9 364 49.7
AUR62029193 Chenopodium quinoa HOM05D003688 ORTHO05D004338 1.3e-80 304.3 343 50.4
CARHR211070 Cardamine hirsuta HOM05D003688 ORTHO05D004338 1.6e-78 297.4 328 50.3
BcaC03g18435 Brassica carinata HOM05D003688 ORTHO05D004338 4.7e-75 285.8 348 49.1
SEGI_36024 Sequoiadendron giganteum HOM05D003688 ORTHO05D004338 4.4e-73 279.3 383 44.4
AUR62014950 Chenopodium quinoa HOM05D003688 ORTHO05D004338 2.5e-68 263.5 374 44.1
Ciclev10013610m.g Citrus clementina HOM05D003688 ORTHO05D004338 1.2e-65 254.6 335 47.8
CDE04G3033 Ceratophyllum demersum HOM05D003688 ORTHO05D004338 2.2e-64 250.4 339 46.3
BcaC03g18436 Brassica carinata HOM05D003688 ORTHO05D004338 4.1e-63 246.1 352 44.6
SMO361G0120 Selaginella moellendorffii HOM05D003688 ORTHO05D004338 5.4e-63 245.7 358 40.8
SMO361G0552 Selaginella moellendorffii HOM05D003688 ORTHO05D004338 5.4e-63 245.7 358 40.8
Pp3c3_24510 Physcomitrium patens HOM05D003688 ORTHO05D004338 1.0e-61 241.5 370 39.7
Pp3c10_20380 Physcomitrium patens HOM05D003688 ORTHO05D004338 2.3e-61 240.4 385 39.0
Pp3c3_37220 Physcomitrium patens HOM05D003688 ORTHO05D004338 4.0e-58 229.6 388 36.1
Mapoly0123s0014 Marchantia polymorpha HOM05D003688 ORTHO05D004338 2.3e-53 213.8 400 36.5
CBR_g34200 Chara braunii HOM05D003688 ORTHO05D004338 2.5e-52 210.3 391 35.8
Pp3c8_2930 Physcomitrium patens HOM05D003688 ORTHO05D004338 2.1e-51 207.2 367 35.7
Pp3c8_2940 Physcomitrium patens HOM05D003688 ORTHO05D004338 2.1e-51 207.2 367 35.7
BcaNung06990 Brassica carinata HOM05D003688 ORTHO05D004338 3.9e-45 186.4 359 39.0
PRCOL_00001936 Prasinoderma coloniale HOM05D003688 ORTHO05D004338 4.3e-20 103.2 196 34.7
unitig_0.g702 Utricularia gibba HOM05D003688 ORTHO05D004338 4.6e-14 83.2 131 43.5
Pp3c7_22570 Physcomitrium patens HOM05D003688 ORTHO05D004338 7.4e-12 75.9 180 28.3
Pp3c15_3560 Physcomitrium patens HOM05D003688 ORTHO05D004338 2.8e-11 73.9 108 38.0
Os01g0148050 Oryza sativa ssp. japonica HOM05D003688 ORTHO05D004338 3.4e-09 67.0 120 40.0
Pp3c2_29090 Physcomitrium patens HOM05D003688 ORTHO05D004338 3.4e-09 67.0 184 26.1
Pp3c9_4700 Physcomitrium patens HOM05D003688 ORTHO05D004338 4.5e-09 66.6 203 28.1
Mapoly0028s0055 Marchantia polymorpha HOM05D003688 ORTHO05D004338 1.3e-08 65.1 351 24.8


User provided reference genes

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