Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G288.5 Capsicum annuum HOM05D006408 ORTHO05D008038 5.7e-189 664.1 330 100.0
Solyc04g057870.3 Solanum lycopersicum HOM05D006408 ORTHO05D008038 2.0e-162 575.9 337 87.5
Sopen04g025710 Solanum pennellii HOM05D006408 ORTHO05D008038 3.5e-162 575.1 337 87.5
PGSC0003DMG400028061 Solanum tuberosum HOM05D006408 ORTHO05D008038 1.7e-156 556.2 337 85.2
Nitab4.5_0001168g0170 Nicotiana tabacum HOM05D006408 ORTHO05D008038 1.4e-147 526.6 334 82.0
Peaxi162Scf00066g00222 Petunia axillaris HOM05D006408 ORTHO05D008038 3.6e-143 511.9 332 80.7
CANSAT25G1301 Cannabis sativa HOM05D006408 ORTHO05D008038 4.4e-133 478.4 330 72.1
TAR628G0457 Trochodendron aralioides HOM05D006408 ORTHO05D008038 2.4e-131 472.6 325 74.2
CiPaw.16G022700 Carya illinoinensis HOM05D006408 ORTHO05D008038 3.0e-129 465.7 331 72.8
PSO017G3385 Papaver somniferum HOM05D006408 ORTHO05D008038 3.9e-129 465.3 343 70.3
Cfa018129 Carpinus fangiana HOM05D006408 ORTHO05D008038 5.1e-129 464.9 325 72.9
MELO3C010512.2 Cucumis melo HOM05D006408 ORTHO05D008038 6.6e-129 464.5 331 71.3
Aqoxy5G02393 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 1.5e-128 463.4 296 77.7
ClCG11G015980 Citrullus lanatus HOM05D006408 ORTHO05D008038 7.3e-128 461.1 310 73.9
PSO170G2303 Papaver somniferum HOM05D006408 ORTHO05D008038 7.3e-128 461.1 340 69.7
MD08G1159400 Malus domestica HOM05D006408 ORTHO05D008038 1.6e-127 459.9 335 69.9
Potri.002G078900 Populus trichocarpa HOM05D006408 ORTHO05D008038 3.6e-127 458.8 294 77.9
CsaV3_4G028270 Cucumis sativus L. HOM05D006408 ORTHO05D008038 4.7e-127 458.4 320 72.2
Prupe.1G489500 Prunus persica HOM05D006408 ORTHO05D008038 6.2e-127 458.0 326 70.6
Sp1g19130 Schrenkiella parvula HOM05D006408 ORTHO05D008038 1.1e-126 457.2 288 77.4
CARHR021960 Cardamine hirsuta HOM05D006408 ORTHO05D008038 1.4e-126 456.8 320 71.9
Gorai.005G087700 Gossypium raimondii HOM05D006408 ORTHO05D008038 3.1e-126 455.7 287 78.4
THA.LOC104814021 Tarenaya hassleriana HOM05D006408 ORTHO05D008038 1.5e-125 453.4 278 78.8
Atru.chr13.1568 Acer truncatum HOM05D006408 ORTHO05D008038 4.4e-125 451.8 324 71.0
Manes.02G168400 Manihot esculenta HOM05D006408 ORTHO05D008038 4.4e-125 451.8 331 71.6
RcHm_v2.0_Chr6g0296711 Rosa chinensis HOM05D006408 ORTHO05D008038 4.4e-125 451.8 309 72.5
PGR083G0137 Punica granatum HOM05D006408 ORTHO05D008038 1.3e-124 450.3 331 70.7
MBI03_g48069_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 2.9e-124 449.1 309 72.5
Cpa.g.sc26.317 Carica papaya HOM05D006408 ORTHO05D008038 6.4e-124 448.0 310 73.2
EL10Ac1g01346 Beta vulgaris HOM05D006408 ORTHO05D008038 1.4e-123 446.8 333 70.6
Thecc.08G133100 Theobroma cacao HOM05D006408 ORTHO05D008038 1.4e-123 446.8 322 71.7
AL1G34740 Arabidopsis lyrata HOM05D006408 ORTHO05D008038 4.2e-123 445.3 319 71.8
Cc10_g13760 Coffea canephora HOM05D006408 ORTHO05D008038 7.1e-123 444.5 328 71.3
CDE06G0572 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 7.8e-122 441.0 338 66.6
A06p17690 Brassica napus HOM05D006408 ORTHO05D008038 1.0e-121 440.7 316 71.2
BraA06t24861Z Brassica rapa HOM05D006408 ORTHO05D008038 1.0e-121 440.7 316 71.2
Nn1g08961 Nelumbo nucifera HOM05D006408 ORTHO05D008038 1.7e-121 439.9 337 69.1
MSTRG.22398 Avicennia marina HOM05D006408 ORTHO05D008038 2.3e-121 439.5 335 69.0
unitig_52.g17545 Utricularia gibba HOM05D006408 ORTHO05D008038 2.3e-121 439.5 286 74.8
Aa31LG7G5580 Aethionema arabicum HOM05D006408 ORTHO05D008038 3.0e-121 439.1 353 65.4
Glyma.04G087000 Glycine max HOM05D006408 ORTHO05D008038 3.9e-121 438.7 299 71.2
C05p20590 Brassica napus HOM05D006408 ORTHO05D008038 6.6e-121 438.0 335 68.1
BolC5t30757H Brassica oleracea HOM05D006408 ORTHO05D008038 6.6e-121 438.0 335 68.1
DCAR_003587 Daucus carota HOM05D006408 ORTHO05D008038 3.3e-120 435.6 259 82.2
Lalb_Chr08g0241101 Lupinus albus HOM05D006408 ORTHO05D008038 1.3e-119 433.7 337 68.2
Glyma.06G117500 Glycine max HOM05D006408 ORTHO05D008038 1.6e-119 433.3 299 70.2
Ca_16607_v3 Cicer arietinum L. HOM05D006408 ORTHO05D008038 2.1e-119 433.0 332 67.2
Oeu047179.2 Olea europaea HOM05D006408 ORTHO05D008038 2.8e-119 432.6 338 68.9
Hma1.2p1_1121F.1_g259280 Hydrangea macrophylla HOM05D006408 ORTHO05D008038 4.8e-119 431.8 322 71.1
VMungo1309G0712 Vigna mungo HOM05D006408 ORTHO05D008038 1.1e-118 430.6 296 70.9
CSS0036755 Camellia sinensis var. sinensis HOM05D006408 ORTHO05D008038 3.1e-118 429.1 331 68.6
Actinidia15213 Actinidia chinensis HOM05D006408 ORTHO05D008038 5.3e-118 428.3 282 74.8
Eucgr.A00239 Eucalyptus grandis HOM05D006408 ORTHO05D008038 5.3e-118 428.3 317 70.3
HanXRQChr02g0045521 Helianthus annuus HOM05D006408 ORTHO05D008038 9.0e-118 427.6 350 65.7
FAN20G2488 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.5e-117 426.8 335 65.7
Sed0021255 Sechium edule HOM05D006408 ORTHO05D008038 2.0e-117 426.4 300 72.3
Migut.N03260 Erythranthe guttata HOM05D006408 ORTHO05D008038 4.4e-117 425.2 331 67.7
Phvul.009G129900 Phaseolus vulgaris HOM05D006408 ORTHO05D008038 7.6e-117 424.5 283 72.4
Psat5g084760 Pisum sativum HOM05D006408 ORTHO05D008038 3.8e-116 422.2 304 69.4
Medtr3g088605 Medicago truncatula HOM05D006408 ORTHO05D008038 8.4e-116 421.0 325 66.8
arahy.Tifrunner.gnm1.ann1.8X384Y Arachis hypogaea HOM05D006408 ORTHO05D008038 1.9e-115 419.9 334 66.5
FAN24G2159 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.9e-115 419.9 333 66.1
arahy.Tifrunner.gnm1.ann1.227FW7 Arachis hypogaea HOM05D006408 ORTHO05D008038 2.4e-115 419.5 332 67.5
FAN27G1901 Fragaria x ananassa HOM05D006408 ORTHO05D008038 2.4e-115 419.5 333 65.5
Ciclev10001886m.g Citrus clementina HOM05D006408 ORTHO05D008038 7.1e-115 417.9 332 68.4
ATR0568G086 Amborella trichopoda HOM05D006408 ORTHO05D008038 1.6e-114 416.8 281 72.6
CDE04G0676 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 2.1e-114 416.4 325 66.2
Lj4A682G50 Lonicera japonica HOM05D006408 ORTHO05D008038 2.1e-114 416.4 246 80.5
TPR.G28811 Trifolium pratense HOM05D006408 ORTHO05D008038 4.6e-114 415.2 284 71.8
AT1G21600 Arabidopsis thaliana HOM05D006408 ORTHO05D008038 2.3e-113 412.9 319 68.0
Gohir.D02G078200 Gossypium hirsutum HOM05D006408 ORTHO05D008038 1.1e-112 410.6 287 72.5
Nitab4.5_0003978g0010 Nicotiana tabacum HOM05D006408 ORTHO05D008038 4.3e-112 408.7 266 80.5
FAN15G0171 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.1e-110 404.1 253 75.5
BcaC05g26077 Brassica carinata HOM05D006408 ORTHO05D008038 2.4e-110 402.9 335 64.5
Carub.0001s2103 Capsella rubella HOM05D006408 ORTHO05D008038 5.3e-110 401.7 225 84.4
GSVIVG01008807001 Vitis vinifera HOM05D006408 ORTHO05D008038 9.9e-109 397.5 222 84.7
QL09p032485 Quercus lobata HOM05D006408 ORTHO05D008038 2.2e-108 396.4 223 83.4
Lsat_1_v5_gn_1_7780 Lactuca sativa HOM05D006408 ORTHO05D008038 2.9e-108 396.0 344 62.5
Ah.10g032560 Amaranthus hybridus HOM05D006408 ORTHO05D008038 8.4e-108 394.4 282 70.9
HPP92_009911 Vanilla planifolia HOM05D006408 ORTHO05D008038 1.1e-107 394.0 276 70.3
ECA236G3303 Erigeron canadensis HOM05D006408 ORTHO05D008038 1.9e-107 393.3 350 61.7
BcaB07g32155 Brassica carinata HOM05D006408 ORTHO05D008038 4.6e-106 388.7 328 64.9
FvH4_2g27850 Fragaria vesca HOM05D006408 ORTHO05D008038 2.8e-103 379.4 333 61.6
Lj1g0002290 Lotus japonicus HOM05D006408 ORTHO05D008038 4.8e-103 378.6 292 66.1
SGA_v2.0_scaffold25G11139 Striga asiatica HOM05D006408 ORTHO05D008038 2.5e-99 366.3 346 58.4
BolC8t49731H Brassica oleracea HOM05D006408 ORTHO05D008038 3.5e-98 362.5 345 59.1
Hund17341 Selenicereus undatus HOM05D006408 ORTHO05D008038 7.9e-98 361.3 299 64.9
A08p28910 Brassica napus HOM05D006408 ORTHO05D008038 6.7e-97 358.2 205 83.4
AUR62007717 Chenopodium quinoa HOM05D006408 ORTHO05D008038 4.0e-94 349.0 304 63.2
Gohir.A02G071000 Gossypium hirsutum HOM05D006408 ORTHO05D008038 6.9e-94 348.2 289 65.4
Thhalv10007813m.g Eutrema salsugineum HOM05D006408 ORTHO05D008038 1.5e-93 347.1 218 75.7
AUR62013426 Chenopodium quinoa HOM05D006408 ORTHO05D008038 7.6e-93 344.7 327 60.2
Zm00001eb195160 Zea mays HOM05D006408 ORTHO05D008038 7.1e-91 338.2 257 63.0
Os11g0110100 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 1.3e-89 334.0 233 68.2
Os12g0110400 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 1.8e-89 333.6 234 67.9
Rhsim06G0091400 Rhododendron simsii HOM05D006408 ORTHO05D008038 3.3e-88 329.3 492 43.5
Sc26g0002930 Simmondsia chinensis HOM05D006408 ORTHO05D008038 6.9e-86 321.6 259 65.6
SEGI_15088 Sequoiadendron giganteum HOM05D006408 ORTHO05D008038 9.7e-80 301.2 253 56.9
C08p20930 Brassica napus HOM05D006408 ORTHO05D008038 3.4e-77 292.7 263 60.5
Mapoly0008s0219 Marchantia polymorpha HOM05D006408 ORTHO05D008038 1.4e-75 287.3 264 52.3
vmacro20822 Vaccinium macrocarpon HOM05D006408 ORTHO05D008038 7.2e-75 285.0 167 80.2
Pp3c1_1000 Physcomitrium patens HOM05D006408 ORTHO05D008038 2.8e-71 273.1 339 45.1
Duzib093G1884 Durio zibethinus HOM05D006408 ORTHO05D008038 1.0e-68 264.6 224 62.1
CsaV3_5G019980 Cucumis sativus L. HOM05D006408 ORTHO05D008038 6.7e-65 251.9 220 57.3
BraA08t34821Z Brassica rapa HOM05D006408 ORTHO05D008038 5.7e-64 248.8 144 83.3
CsaV3_UNG224650 Cucumis sativus L. HOM05D006408 ORTHO05D008038 2.2e-60 236.9 213 57.7
COL.COLO4_06961 Corchorus olitorius HOM05D006408 ORTHO05D008038 6.5e-60 235.3 225 58.2
SMO146G0302 Selaginella moellendorffii HOM05D006408 ORTHO05D008038 3.2e-59 233.0 205 52.7
SalBow2G2951 Salvia bowleyana HOM05D006408 ORTHO05D008038 3.4e-56 223.0 224 57.1
Dinv14691 Davidia involucrata HOM05D006408 ORTHO05D008038 9.8e-56 221.5 190 65.3
MBI03_g28486_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 2.4e-54 216.9 245 52.2
MBI03_g39652_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 2.3e-44 183.7 161 59.6
Sabra02G0061800 Salix brachista HOM05D006408 ORTHO05D008038 1.6e-37 161.0 97 80.4
Aqoxy219s001 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 7.3e-35 152.1 109 71.6
CBR_g40143 Chara braunii HOM05D006408 ORTHO05D008038 4.0e-33 146.4 175 41.7
CsaV3_5G018920 Cucumis sativus L. HOM05D006408 ORTHO05D008038 4.3e-27 126.3 154 48.1
BolC5t30909H Brassica oleracea HOM05D006408 ORTHO05D008038 2.0e-24 117.5 61 85.2
AagrBONN_evm.TU.Sc2ySwM_344.4901 Anthoceros agrestis HOM05D006408 ORTHO05D008038 9.8e-24 115.2 137 46.0
Actinidia21278 Actinidia chinensis HOM05D006408 ORTHO05D008038 2.1e-21 107.5 105 54.3
MBI14_g28586_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 2.1e-13 80.9 43 88.4
CsaV3_UNG111870 Cucumis sativus L. HOM05D006408 ORTHO05D008038 6.8e-09 65.9 68 52.9
CsaV3_UNG115880 Cucumis sativus L. HOM05D006408 ORTHO05D008038 6.8e-09 65.9 68 52.9
Actinidia21279 Actinidia chinensis HOM05D006408 ORTHO05D008038 9.9e-08 62.0 169 33.7
CsaV3_5G018930 Cucumis sativus L. HOM05D006408 ORTHO05D008038 2.4e-06 57.4 52 48.1


User provided reference genes

Program Settings