Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G227.6 Capsicum annuum HOM05D000824 ORTHO05D003555 2.2e-34 148.3 70 100.0
Peaxi162Scf00201g00330 Petunia axillaris HOM05D000824 ORTHO05D003555 3.9e-15 84.3 42 97.6
Nitab4.5_0001485g0110 Nicotiana tabacum HOM05D000824 ORTHO05D003555 8.8e-15 83.2 42 95.2
Nitab4.5_0009401g0060 Nicotiana tabacum HOM05D000824 ORTHO05D003555 8.8e-15 83.2 42 95.2
arahy.Tifrunner.gnm1.ann1.E3U0AR Arachis hypogaea HOM05D000824 ORTHO05D003555 1.1e-14 82.8 42 92.9
arahy.Tifrunner.gnm1.ann1.J8WCL7 Arachis hypogaea HOM05D000824 ORTHO05D003555 1.1e-14 82.8 42 92.9
MSTRG.11337 Avicennia marina HOM05D000824 ORTHO05D003555 1.1e-14 82.8 42 92.9
CSS0009813 Camellia sinensis var. sinensis HOM05D000824 ORTHO05D003555 1.1e-14 82.8 42 92.9
CSS0043196 Camellia sinensis var. sinensis HOM05D000824 ORTHO05D003555 1.1e-14 82.8 42 92.9
CAN.G1228.20 Capsicum annuum HOM05D000824 ORTHO05D003555 1.5e-14 82.4 42 95.2
Oeu044875.1 Olea europaea HOM05D000824 ORTHO05D003555 1.5e-14 82.4 42 95.2
Solyc03g115050.3 Solanum lycopersicum HOM05D000824 ORTHO05D003555 1.5e-14 82.4 42 95.2
Sopen03g034120 Solanum pennellii HOM05D000824 ORTHO05D003555 1.5e-14 82.4 42 95.2
PGSC0003DMG400024634 Solanum tuberosum HOM05D000824 ORTHO05D003555 1.5e-14 82.4 42 95.2
Hma1.2p1_0060F.1_g033050 Hydrangea macrophylla HOM05D000824 ORTHO05D003555 2.0e-14 82.0 42 90.5
Actinidia04822 Actinidia chinensis HOM05D000824 ORTHO05D003555 2.6e-14 81.6 42 92.9
AL8G37660 Arabidopsis lyrata HOM05D000824 ORTHO05D003555 2.6e-14 81.6 42 92.9
BcaC04g23467 Brassica carinata HOM05D000824 ORTHO05D003555 2.6e-14 81.6 42 92.9
A09p07190 Brassica napus HOM05D000824 ORTHO05D003555 2.6e-14 81.6 42 92.9
C09p08030 Brassica napus HOM05D000824 ORTHO05D003555 2.6e-14 81.6 42 92.9
BolC9t53717H Brassica oleracea HOM05D000824 ORTHO05D003555 2.6e-14 81.6 42 92.9
BraA09t36368Z Brassica rapa HOM05D000824 ORTHO05D003555 2.6e-14 81.6 42 92.9
Migut.I00367 Erythranthe guttata HOM05D000824 ORTHO05D003555 2.6e-14 81.6 42 90.5
Lj4g0021262 Lotus japonicus HOM05D000824 ORTHO05D003555 2.6e-14 81.6 42 90.5
Medtr4g109580 Medicago truncatula HOM05D000824 ORTHO05D003555 2.6e-14 81.6 42 92.9
Carub.0008s2169 Capsella rubella HOM05D000824 ORTHO05D003555 3.3e-14 81.3 42 90.5
Thhalv10003822m.g Eutrema salsugineum HOM05D000824 ORTHO05D003555 3.3e-14 81.3 42 90.5
Sp2g24310 Schrenkiella parvula HOM05D000824 ORTHO05D003555 3.3e-14 81.3 42 90.5
THA.LOC104804633 Tarenaya hassleriana HOM05D000824 ORTHO05D003555 4.4e-14 80.9 42 92.9
Aa31LG3G18510 Aethionema arabicum HOM05D000824 ORTHO05D003555 5.7e-14 80.5 42 90.5
Dinv22775 Davidia involucrata HOM05D000824 ORTHO05D003555 7.4e-14 80.1 42 88.1
Eucgr.B00601 Eucalyptus grandis HOM05D000824 ORTHO05D003555 7.4e-14 80.1 67 61.2
C07p44760 Brassica napus HOM05D000824 ORTHO05D003555 9.7e-14 79.7 42 88.1
CARHR274710 Cardamine hirsuta HOM05D000824 ORTHO05D003555 9.7e-14 79.7 42 88.1
TPR.G2021 Trifolium pratense HOM05D000824 ORTHO05D003555 9.7e-14 79.7 42 88.1
Actinidia16130 Actinidia chinensis HOM05D000824 ORTHO05D003555 1.3e-13 79.3 42 88.1
BcaC06g33184 Brassica carinata HOM05D000824 ORTHO05D003555 1.3e-13 79.3 42 88.1
BcaNung06900 Brassica carinata HOM05D000824 ORTHO05D003555 1.3e-13 79.3 42 88.1
A03p46710 Brassica napus HOM05D000824 ORTHO05D003555 1.3e-13 79.3 42 88.1
BraA03t13794Z Brassica rapa HOM05D000824 ORTHO05D003555 1.3e-13 79.3 42 88.1
Cc00_g07660 Coffea canephora HOM05D000824 ORTHO05D003555 1.3e-13 79.3 42 88.1
Manes.06G084200 Manihot esculenta HOM05D000824 ORTHO05D003555 1.3e-13 79.3 42 90.5
Rhsim08G0145600 Rhododendron simsii HOM05D000824 ORTHO05D003555 1.3e-13 79.3 42 90.5
Nn4g23436 Nelumbo nucifera HOM05D000824 ORTHO05D003555 1.7e-13 79.0 42 88.1
Psat4g047800 Pisum sativum HOM05D000824 ORTHO05D003555 1.7e-13 79.0 42 88.1
QL10p019699 Quercus lobata HOM05D000824 ORTHO05D003555 1.7e-13 79.0 42 88.1
Sc04g0004360 Simmondsia chinensis HOM05D000824 ORTHO05D003555 1.7e-13 79.0 42 90.5
TAR371G0671 Trochodendron aralioides HOM05D000824 ORTHO05D003555 1.7e-13 79.0 42 83.3
AT5G61000 Arabidopsis thaliana HOM05D000824 ORTHO05D003555 2.2e-13 78.6 42 85.7
MSTRG.22957 Avicennia marina HOM05D000824 ORTHO05D003555 2.2e-13 78.6 42 88.1
BcaB01g05683 Brassica carinata HOM05D000824 ORTHO05D003555 2.2e-13 78.6 42 88.1
A03p03540 Brassica napus HOM05D000824 ORTHO05D003555 2.2e-13 78.6 42 88.1
C03p03990 Brassica napus HOM05D000824 ORTHO05D003555 2.2e-13 78.6 42 88.1
BolC3t12936H Brassica oleracea HOM05D000824 ORTHO05D003555 2.2e-13 78.6 42 88.1
BraA03t09704Z Brassica rapa HOM05D000824 ORTHO05D003555 2.2e-13 78.6 42 88.1
Dinv17419 Davidia involucrata HOM05D000824 ORTHO05D003555 2.2e-13 78.6 42 88.1
Phvul.003G184400 Phaseolus vulgaris HOM05D000824 ORTHO05D003555 2.2e-13 78.6 42 88.1
DCAR_023168 Daucus carota HOM05D000824 ORTHO05D003555 2.8e-13 78.2 42 85.7
Lj5A102T96 Lonicera japonica HOM05D000824 ORTHO05D003555 2.8e-13 78.2 42 88.1
Hund02583 Selenicereus undatus HOM05D000824 ORTHO05D003555 2.8e-13 78.2 42 88.1
SGA_v2.0_scaffold25G10955 Striga asiatica HOM05D000824 ORTHO05D003555 2.8e-13 78.2 42 90.5
Ah.11g047720 Amaranthus hybridus HOM05D000824 ORTHO05D003555 3.7e-13 77.8 42 88.1
Ca_21770_v3 Cicer arietinum L. HOM05D000824 ORTHO05D003555 3.7e-13 77.8 42 88.1
Sabra15G0082600 Salix brachista HOM05D000824 ORTHO05D003555 3.7e-13 77.8 42 90.5
Hund09917 Selenicereus undatus HOM05D000824 ORTHO05D003555 3.7e-13 77.8 42 88.1
Carub.0006s0691 Capsella rubella HOM05D000824 ORTHO05D003555 4.8e-13 77.4 42 85.7
VMungo1215G1142 Vigna mungo HOM05D000824 ORTHO05D003555 4.8e-13 77.4 42 85.7
Ciclev10019317m.g Citrus clementina HOM05D000824 ORTHO05D003555 6.3e-13 77.0 42 85.7
Haze_07734 Corylus avellana HOM05D000824 ORTHO05D003555 6.3e-13 77.0 42 85.7
Lalb_Chr12g0197221 Lupinus albus HOM05D000824 ORTHO05D003555 6.3e-13 77.0 42 85.7
Lalb_Chr13g0302831 Lupinus albus HOM05D000824 ORTHO05D003555 6.3e-13 77.0 42 85.7
SGA_v2.0_scaffold28G11745 Striga asiatica HOM05D000824 ORTHO05D003555 6.3e-13 77.0 42 88.1
vmacro17614 Vaccinium macrocarpon HOM05D000824 ORTHO05D003555 6.3e-13 77.0 42 88.1
CARHR205160 Cardamine hirsuta HOM05D000824 ORTHO05D003555 8.2e-13 76.6 42 85.7
Cfa019342 Carpinus fangiana HOM05D000824 ORTHO05D003555 8.2e-13 76.6 42 83.3
CiPaw.11G054100 Carya illinoinensis HOM05D000824 ORTHO05D003555 8.2e-13 76.6 42 85.7
DCAR_011568 Daucus carota HOM05D000824 ORTHO05D003555 8.2e-13 76.6 42 83.3
DCAR_011569 Daucus carota HOM05D000824 ORTHO05D003555 8.2e-13 76.6 42 83.3
Duzib205G0152 Durio zibethinus HOM05D000824 ORTHO05D003555 8.2e-13 76.6 42 85.7
Potri.015G057300 Populus trichocarpa HOM05D000824 ORTHO05D003555 8.2e-13 76.6 42 88.1
Sed0022878 Sechium edule HOM05D000824 ORTHO05D003555 8.2e-13 76.6 42 78.6
EL10Ac5g11138 Beta vulgaris HOM05D000824 ORTHO05D003555 1.1e-12 76.3 42 85.7
BcaB01g05642 Brassica carinata HOM05D000824 ORTHO05D003555 1.1e-12 76.3 42 85.7
CANSAT80G1236 Cannabis sativa HOM05D000824 ORTHO05D003555 1.1e-12 76.3 42 85.7
Gorai.003G101500 Gossypium raimondii HOM05D000824 ORTHO05D003555 1.1e-12 76.3 42 85.7
GSVIVG01007849001 Vitis vinifera HOM05D000824 ORTHO05D003555 1.1e-12 76.3 42 88.1
Cpa.g.sc1086.1 Carica papaya HOM05D000824 ORTHO05D003555 1.4e-12 75.9 42 85.7
Thhalv10013014m.g Eutrema salsugineum HOM05D000824 ORTHO05D003555 1.4e-12 75.9 42 83.3
Glyma.17G078700 Glycine max HOM05D000824 ORTHO05D003555 1.4e-12 75.9 42 85.7
Lj9C471T8 Lonicera japonica HOM05D000824 ORTHO05D003555 1.4e-12 75.9 42 85.7
RcHm_v2.0_Chr7g0183161 Rosa chinensis HOM05D000824 ORTHO05D003555 1.4e-12 75.9 42 85.7
THA.LOC104819400 Tarenaya hassleriana HOM05D000824 ORTHO05D003555 1.4e-12 75.9 42 85.7
TWI81G1098 Tripterygium wilfordii HOM05D000824 ORTHO05D003555 1.4e-12 75.9 42 83.3
Atru.chr9.564 Acer truncatum HOM05D000824 ORTHO05D003555 1.8e-12 75.5 42 85.7
AL6G18370 Arabidopsis lyrata HOM05D000824 ORTHO05D003555 1.8e-12 75.5 42 83.3
BcaB08g37297 Brassica carinata HOM05D000824 ORTHO05D003555 1.8e-12 75.5 42 81.0
Eucgr.B00599 Eucalyptus grandis HOM05D000824 ORTHO05D003555 1.8e-12 75.5 42 83.3
FAN08G1674 Fragaria x ananassa HOM05D000824 ORTHO05D003555 1.8e-12 75.5 42 85.7
Sp6g34920 Schrenkiella parvula HOM05D000824 ORTHO05D003555 1.8e-12 75.5 42 83.3
GSVIVG01035135001 Vitis vinifera HOM05D000824 ORTHO05D003555 1.8e-12 75.5 42 88.1
AUR62008537 Chenopodium quinoa HOM05D000824 ORTHO05D003555 2.4e-12 75.1 42 83.3
AUR62021554 Chenopodium quinoa HOM05D000824 ORTHO05D003555 2.4e-12 75.1 42 83.3
MD06G1225500 Malus domestica HOM05D000824 ORTHO05D003555 2.4e-12 75.1 42 85.7
Prupe.5G205700 Prunus persica HOM05D000824 ORTHO05D003555 2.4e-12 75.1 42 83.3
Glyma.05G020600 Glycine max HOM05D000824 ORTHO05D003555 3.1e-12 74.7 42 83.3
PGR083G2843 Punica granatum HOM05D000824 ORTHO05D003555 3.1e-12 74.7 42 83.3
AT5G08020 Arabidopsis thaliana HOM05D000824 ORTHO05D003555 4.1e-12 74.3 42 83.3
Ah.02g114080 Amaranthus hybridus HOM05D000824 ORTHO05D003555 5.3e-12 73.9 42 81.0
COL.COLO4_06851 Corchorus olitorius HOM05D000824 ORTHO05D003555 5.3e-12 73.9 42 81.0
MELO3C017228.2 Cucumis melo HOM05D000824 ORTHO05D003555 5.3e-12 73.9 42 76.2
Gohir.D03G096700 Gossypium hirsutum HOM05D000824 ORTHO05D003555 5.3e-12 73.9 42 83.3
TAR629G0759 Trochodendron aralioides HOM05D000824 ORTHO05D003555 5.3e-12 73.9 42 78.6
CsaV3_1G002970 Cucumis sativus L. HOM05D000824 ORTHO05D003555 7.0e-12 73.6 42 76.2
Gohir.A03G070300 Gossypium hirsutum HOM05D000824 ORTHO05D003555 7.0e-12 73.6 42 81.0
GSVIVG01023662001 Vitis vinifera HOM05D000824 ORTHO05D003555 7.0e-12 73.6 41 87.8
GSVIVG01032319001 Vitis vinifera HOM05D000824 ORTHO05D003555 7.0e-12 73.6 41 87.8
FvH4_5g13771 Fragaria vesca HOM05D000824 ORTHO05D003555 9.1e-12 73.2 42 81.0
FAN18G4284 Fragaria x ananassa HOM05D000824 ORTHO05D003555 9.1e-12 73.2 42 81.0
SHI27090 Sapria himalayana HOM05D000824 ORTHO05D003555 9.1e-12 73.2 42 76.2
AL6G18410 Arabidopsis lyrata HOM05D000824 ORTHO05D003555 1.2e-11 72.8 41 82.9
MD14G1212400 Malus domestica HOM05D000824 ORTHO05D003555 1.2e-11 72.8 42 78.6
Sed0027547 Sechium edule HOM05D000824 ORTHO05D003555 1.2e-11 72.8 42 73.8
ClCG06G015600 Citrullus lanatus HOM05D000824 ORTHO05D003555 1.6e-11 72.4 42 73.8
FAN13G2002 Fragaria x ananassa HOM05D000824 ORTHO05D003555 1.6e-11 72.4 42 81.0
Thecc.03G102500 Theobroma cacao HOM05D000824 ORTHO05D003555 1.6e-11 72.4 42 78.6
Aqoxy3G03684 Aquilegia oxysepala HOM05D000824 ORTHO05D003555 2.0e-11 72.0 42 78.6
Lsat_1_v5_gn_1_14461 Lactuca sativa HOM05D000824 ORTHO05D003555 2.0e-11 72.0 42 78.6
ECA247G3309 Erigeron canadensis HOM05D000824 ORTHO05D003555 2.6e-11 71.6 42 78.6
HPP92_014050 Vanilla planifolia HOM05D000824 ORTHO05D003555 2.6e-11 71.6 40 80.0
Duzib084G0695 Durio zibethinus HOM05D000824 ORTHO05D003555 3.5e-11 71.2 42 76.2
HanXRQChr02g0044771 Helianthus annuus HOM05D000824 ORTHO05D003555 3.5e-11 71.2 42 81.0
Nn3g17458 Nelumbo nucifera HOM05D000824 ORTHO05D003555 3.5e-11 71.2 42 76.2
Zm00001eb400180 Zea mays HOM05D000824 ORTHO05D003555 4.5e-11 70.9 41 80.5
PSO017G4603 Papaver somniferum HOM05D000824 ORTHO05D003555 7.7e-11 70.1 41 75.6
PSO478G2603 Papaver somniferum HOM05D000824 ORTHO05D003555 7.7e-11 70.1 41 75.6
Zm00001eb008630 Zea mays HOM05D000824 ORTHO05D003555 1.0e-10 69.7 41 80.5
HanXRQChr16g0517661 Helianthus annuus HOM05D000824 ORTHO05D003555 1.7e-10 68.9 42 78.6
Os03g0214100 Oryza sativa ssp. japonica HOM05D000824 ORTHO05D003555 1.7e-10 68.9 41 73.2
Medtr4g109590 Medicago truncatula HOM05D000824 ORTHO05D003555 2.2e-10 68.6 42 76.2
GSVIVG01014619001 Vitis vinifera HOM05D000824 ORTHO05D003555 3.2e-09 64.7 39 79.5
ATR0177G023 Amborella trichopoda HOM05D000824 ORTHO05D003555 5.5e-09 63.9 42 66.7
CSS0018008 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.0e-08 60.1 44 65.9
SEGI_23554 Sequoiadendron giganteum HOM05D000824 ORTHO05D003555 1.0e-07 59.7 42 57.1
AagrBONN_evm.TU.Sc2ySwM_228.2389 Anthoceros agrestis HOM05D000824 ORTHO05D003555 8.8e-07 56.6 44 61.4
Zm00001eb282530 Zea mays HOM05D000824 ORTHO05D003555 8.8e-07 56.6 37 75.7


User provided reference genes

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