Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G223.3 Capsicum annuum HOM05D001517 ORTHO05D001424 3.3e-118 428.3 210 100.0
CAN.G588.45 Capsicum annuum HOM05D001517 ORTHO05D001424 1.8e-15 87.0 51 86.3
PGSC0003DMG400001590 Solanum tuberosum HOM05D001517 ORTHO05D001424 1.4e-12 77.4 53 71.7
Nitab4.5_0001891g0080 Nicotiana tabacum HOM05D001517 ORTHO05D001424 2.5e-12 76.6 47 78.7
Nitab4.5_0005328g0010 Nicotiana tabacum HOM05D001517 ORTHO05D001424 2.5e-12 76.6 47 78.7
Sopen10g025070 Solanum pennellii HOM05D001517 ORTHO05D001424 4.2e-12 75.9 51 72.5
Nitab4.5_0001889g0130 Nicotiana tabacum HOM05D001517 ORTHO05D001424 7.2e-12 75.1 47 74.5
PGSC0003DMG400023206 Solanum tuberosum HOM05D001517 ORTHO05D001424 7.2e-12 75.1 51 70.6
Solyc10g055250.1 Solanum lycopersicum HOM05D001517 ORTHO05D001424 9.4e-12 74.7 48 75.0
Solyc01g111300.4 Solanum lycopersicum HOM05D001517 ORTHO05D001424 4.7e-11 72.4 51 70.6
Sopen01g053360 Solanum pennellii HOM05D001517 ORTHO05D001424 4.7e-11 72.4 51 70.6
CAN.G167.5 Capsicum annuum HOM05D001517 ORTHO05D001424 6.1e-11 72.0 56 67.9
Peaxi162Scf00362g00091 Petunia axillaris HOM05D001517 ORTHO05D001424 1.4e-10 70.9 47 70.2
PGSC0003DMG400001591 Solanum tuberosum HOM05D001517 ORTHO05D001424 1.8e-10 70.5 47 70.2
DCAR_003153 Daucus carota HOM05D001517 ORTHO05D001424 2.3e-10 70.1 54 66.7
Peaxi162Scf00042g00273 Petunia axillaris HOM05D001517 ORTHO05D001424 2.3e-10 70.1 46 71.7
Aqoxy6G02222 Aquilegia oxysepala HOM05D001517 ORTHO05D001424 3.9e-10 69.3 56 62.5
Haze_02169 Corylus avellana HOM05D001517 ORTHO05D001424 3.9e-10 69.3 54 66.7
Sopen01g053350 Solanum pennellii HOM05D001517 ORTHO05D001424 3.9e-10 69.3 47 68.1
TAR628G0853 Trochodendron aralioides HOM05D001517 ORTHO05D001424 3.9e-10 69.3 57 63.2
Psat0ss26108g0040 Pisum sativum HOM05D001517 ORTHO05D001424 8.8e-10 68.2 54 61.1
Glyma.11G105900 Glycine max HOM05D001517 ORTHO05D001424 1.1e-09 67.8 54 61.1
Glyma.12G030800 Glycine max HOM05D001517 ORTHO05D001424 1.1e-09 67.8 54 61.1
Cfa005217 Carpinus fangiana HOM05D001517 ORTHO05D001424 1.5e-09 67.4 53 66.0
ECA234G4289 Erigeron canadensis HOM05D001517 ORTHO05D001424 2.0e-09 67.0 51 60.8
Phvul.011G033900 Phaseolus vulgaris HOM05D001517 ORTHO05D001424 2.6e-09 66.6 56 58.9
Solyc01g111280.3 Solanum lycopersicum HOM05D001517 ORTHO05D001424 2.6e-09 66.6 62 56.5
TWI79G0078 Tripterygium wilfordii HOM05D001517 ORTHO05D001424 2.6e-09 66.6 74 50.0
arahy.Tifrunner.gnm1.ann1.LP1JBF Arachis hypogaea HOM05D001517 ORTHO05D001424 4.4e-09 65.9 46 67.4
arahy.Tifrunner.gnm1.ann1.LSB155 Arachis hypogaea HOM05D001517 ORTHO05D001424 4.4e-09 65.9 46 67.4
Migut.B00101 Erythranthe guttata HOM05D001517 ORTHO05D001424 4.4e-09 65.9 54 61.1
SGA_v2.0_scaffold80G25861 Striga asiatica HOM05D001517 ORTHO05D001424 4.4e-09 65.9 57 59.6
TWI31G1215 Tripterygium wilfordii HOM05D001517 ORTHO05D001424 4.4e-09 65.9 54 57.4
MBI05_g05279_MAGBIO Magnolia biondii HOM05D001517 ORTHO05D001424 5.7e-09 65.5 46 63.0
MBI14_g04427_MAGBIO Magnolia biondii HOM05D001517 ORTHO05D001424 5.7e-09 65.5 46 63.0
HanXRQChr10g0299031 Helianthus annuus HOM05D001517 ORTHO05D001424 7.4e-09 65.1 57 61.4
MBI15_g46597_MAGBIO Magnolia biondii HOM05D001517 ORTHO05D001424 7.4e-09 65.1 51 58.8
Manes.11G083125 Manihot esculenta HOM05D001517 ORTHO05D001424 9.7e-09 64.7 46 65.2
Thecc.02G063600 Theobroma cacao HOM05D001517 ORTHO05D001424 9.7e-09 64.7 54 61.1
GSVIVG01024055001 Vitis vinifera HOM05D001517 ORTHO05D001424 9.7e-09 64.7 61 59.0
Carub.0007s0055 Capsella rubella HOM05D001517 ORTHO05D001424 1.3e-08 64.3 51 62.7
Lalb_Chr01g0001721 Lupinus albus HOM05D001517 ORTHO05D001424 1.3e-08 64.3 54 59.3
Nn1g05930 Nelumbo nucifera HOM05D001517 ORTHO05D001424 1.3e-08 64.3 54 57.4
PGR042G3941 Punica granatum HOM05D001517 ORTHO05D001424 1.3e-08 64.3 48 70.8
TAR376G0860 Trochodendron aralioides HOM05D001517 ORTHO05D001424 1.3e-08 64.3 56 60.7
Zm00001eb208310 Zea mays HOM05D001517 ORTHO05D001424 1.3e-08 64.3 47 66.0
SEGI_40891 Sequoiadendron giganteum HOM05D001517 ORTHO05D001424 1.7e-08 63.9 51 60.8
Gohir.D02G225400 Gossypium hirsutum HOM05D001517 ORTHO05D001424 2.2e-08 63.5 55 61.8
Lalb_Chr03g0025031 Lupinus albus HOM05D001517 ORTHO05D001424 2.2e-08 63.5 46 63.0
Manes.04G076800 Manihot esculenta HOM05D001517 ORTHO05D001424 2.2e-08 63.5 54 63.0
Os02g0121100 Oryza sativa ssp. japonica HOM05D001517 ORTHO05D001424 2.2e-08 63.5 48 60.4
Pp3c6_23240 Physcomitrium patens HOM05D001517 ORTHO05D001424 2.2e-08 63.5 71 46.5
SMO223G0045 Selaginella moellendorffii HOM05D001517 ORTHO05D001424 2.2e-08 63.5 83 41.0
Lalb_Chr19g0139191 Lupinus albus HOM05D001517 ORTHO05D001424 2.8e-08 63.2 46 63.0
Pp3c5_6070 Physcomitrium patens HOM05D001517 ORTHO05D001424 2.8e-08 63.2 53 56.6
Pp3c5_7880 Physcomitrium patens HOM05D001517 ORTHO05D001424 2.8e-08 63.2 60 55.0
Pp3c5_7920 Physcomitrium patens HOM05D001517 ORTHO05D001424 2.8e-08 63.2 60 55.0
CSS0033859 Camellia sinensis var. sinensis HOM05D001517 ORTHO05D001424 3.7e-08 62.8 54 53.7
CiPaw.06G123800 Carya illinoinensis HOM05D001517 ORTHO05D001424 3.7e-08 62.8 46 63.0
Migut.N01302 Erythranthe guttata HOM05D001517 ORTHO05D001424 3.7e-08 62.8 51 58.8
PSO170G2836 Papaver somniferum HOM05D001517 ORTHO05D001424 3.7e-08 62.8 53 58.5
PSO700G0115 Papaver somniferum HOM05D001517 ORTHO05D001424 3.7e-08 62.8 53 58.5
PGSC0003DMG400013471 Solanum tuberosum HOM05D032831 ORTHO05D028474 3.7e-08 62.8 48 66.7
C03p73740 Brassica napus HOM05D001517 ORTHO05D001424 4.8e-08 62.4 51 60.8
BolC3t19665H Brassica oleracea HOM05D001517 ORTHO05D001424 4.8e-08 62.4 51 60.8
Cpa.g.sc37.170 Carica papaya HOM05D001517 ORTHO05D001424 4.8e-08 62.4 48 66.7
CiPaw.05G079500 Carya illinoinensis HOM05D001517 ORTHO05D001424 4.8e-08 62.4 51 58.8
Duzib132G0788 Durio zibethinus HOM05D001517 ORTHO05D001424 4.8e-08 62.4 57 61.4
Sabra04G0114700 Salix brachista HOM05D001517 ORTHO05D001424 4.8e-08 62.4 55 58.2
TPR.G19916 Trifolium pratense HOM05D001517 ORTHO05D001424 4.8e-08 62.4 46 60.9
TAR381G0031 Trochodendron aralioides HOM05D001517 ORTHO05D001424 4.8e-08 62.4 44 63.6
CDE04G0551 Ceratophyllum demersum HOM05D001517 ORTHO05D001424 6.3e-08 62.0 57 56.1
MBI15_g02684_MAGBIO Magnolia biondii HOM05D001517 ORTHO05D001424 6.3e-08 62.0 51 56.9
QL11p049250 Quercus lobata HOM05D001517 ORTHO05D001424 6.3e-08 62.0 46 60.9
THA.LOC104804094 Tarenaya hassleriana HOM05D001517 ORTHO05D001424 6.3e-08 62.0 57 59.6
A08p26320 Brassica napus HOM05D001517 ORTHO05D001424 8.2e-08 61.6 48 62.5
BraA08t34583Z Brassica rapa HOM05D001517 ORTHO05D001424 8.2e-08 61.6 48 62.5
SEGI_08808 Sequoiadendron giganteum HOM05D001517 ORTHO05D001424 8.2e-08 61.6 48 60.4
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.1e-07 61.2 54 55.6
CBR_g6611 Chara braunii HOM05D001517 ORTHO05D001424 1.1e-07 61.2 78 46.2
ECA233G0819 Erigeron canadensis HOM05D001517 ORTHO05D001424 1.1e-07 61.2 51 56.9
CARHR111900 Cardamine hirsuta HOM05D001517 ORTHO05D001424 1.4e-07 60.8 54 59.3
MBI07_g00475_MAGBIO Magnolia biondii HOM05D001517 ORTHO05D001424 1.4e-07 60.8 46 58.7
THA.LOC104807821 Tarenaya hassleriana HOM05D001517 ORTHO05D001424 1.4e-07 60.8 54 63.0
TWI75G0302 Tripterygium wilfordii HOM05D001517 ORTHO05D001424 1.4e-07 60.8 51 56.9
VMungo1309G0193 Vigna mungo HOM05D001517 ORTHO05D001424 1.4e-07 60.8 57 56.1
Aqoxy5G01801 Aquilegia oxysepala HOM05D001517 ORTHO05D001424 1.8e-07 60.5 82 41.5
MSTRG.5443 Avicennia marina HOM05D001517 ORTHO05D001424 1.8e-07 60.5 60 55.0
Lsat_1_v5_gn_3_46880 Lactuca sativa HOM05D001517 ORTHO05D001424 1.8e-07 60.5 48 58.3
Rhsim05G0062100 Rhododendron simsii HOM05D001517 ORTHO05D001424 1.8e-07 60.5 56 50.0
AT4G38680 Arabidopsis thaliana HOM05D001517 ORTHO05D001424 2.4e-07 60.1 51 60.8
C04p50290 Brassica napus HOM05D001517 ORTHO05D001424 2.4e-07 60.1 48 62.5
BolC4t26627H Brassica oleracea HOM05D001517 ORTHO05D001424 2.4e-07 60.1 48 62.5
Cc02_g16400 Coffea canephora HOM05D001517 ORTHO05D001424 2.4e-07 60.1 53 58.5
Prupe.7G169300 Prunus persica HOM05D001517 ORTHO05D001424 2.4e-07 60.1 64 43.8
SalBow6G7030 Salvia bowleyana HOM05D001517 ORTHO05D001424 2.4e-07 60.1 54 51.9
Sp4g00200 Schrenkiella parvula HOM05D001517 ORTHO05D001424 2.4e-07 60.1 51 60.8
Sc08g0003060 Simmondsia chinensis HOM05D001517 ORTHO05D001424 2.4e-07 60.1 51 56.9
SGA_v2.0_scaffold207G41901 Striga asiatica HOM05D001517 ORTHO05D001424 2.4e-07 60.1 46 60.9
Actinidia00609 Actinidia chinensis HOM05D001517 ORTHO05D001424 3.1e-07 59.7 51 54.9
A04p15850 Brassica napus HOM05D001517 ORTHO05D001424 3.1e-07 59.7 48 62.5
BraA04t17216Z Brassica rapa HOM05D001517 ORTHO05D001424 3.1e-07 59.7 48 62.5
CDE08G1448 Ceratophyllum demersum HOM05D001517 ORTHO05D001424 3.1e-07 59.7 46 58.7
Phvul.009G025100 Phaseolus vulgaris HOM05D001517 ORTHO05D001424 3.1e-07 59.7 57 54.4
GSVIVG01018771001 Vitis vinifera HOM05D001517 ORTHO05D001424 3.1e-07 59.7 53 52.8
AL4G10150 Arabidopsis lyrata HOM05D001517 ORTHO05D001424 4.1e-07 59.3 48 64.6
A07p11840 Brassica napus HOM05D001517 ORTHO05D001424 4.1e-07 59.3 49 63.3
BraA07t28969Z Brassica rapa HOM05D001517 ORTHO05D001424 4.1e-07 59.3 49 63.3
Cre06.g268600 Chlamydomonas reinhardtii HOM05D001517 ORTHO05D001424 4.1e-07 59.3 54 57.4
Gohir.A01G165500 Gossypium hirsutum HOM05D001517 ORTHO05D001424 4.1e-07 59.3 51 64.7
Gohir.D01G156900 Gossypium hirsutum HOM05D001517 ORTHO05D001424 4.1e-07 59.3 51 64.7
Gohir.D01G157000 Gossypium hirsutum HOM05D001517 ORTHO05D001424 4.1e-07 59.3 51 64.7
Gorai.002G195000 Gossypium raimondii HOM05D001517 ORTHO05D001424 4.1e-07 59.3 51 64.7
Gorai.002G195100 Gossypium raimondii HOM05D001517 ORTHO05D001424 4.1e-07 59.3 51 64.7
Lj6g0026397 Lotus japonicus HOM05D001517 ORTHO05D001424 4.1e-07 59.3 54 55.6
MBI04_g22608_MAGBIO Magnolia biondii HOM05D001517 ORTHO05D001424 4.1e-07 59.3 51 52.9
Sabra09G0102400 Salix brachista HOM05D001517 ORTHO05D001424 4.1e-07 59.3 57 52.6
C02p43880 Brassica napus HOM05D001517 ORTHO05D001424 5.3e-07 58.9 82 46.3
Gohir.A01G165700 Gossypium hirsutum HOM05D001517 ORTHO05D001424 5.3e-07 58.9 51 62.7
PSO675G1159 Papaver somniferum HOM05D001517 ORTHO05D001424 5.3e-07 58.9 53 52.8
Sp1g23630 Schrenkiella parvula HOM05D001517 ORTHO05D001424 5.3e-07 58.9 48 60.4
CSS0011572 Camellia sinensis var. sinensis HOM05D001517 ORTHO05D001424 7.0e-07 58.5 48 56.2
CSS0028878 Camellia sinensis var. sinensis HOM05D001517 ORTHO05D001424 7.0e-07 58.5 48 56.2
CARHR294400 Cardamine hirsuta HOM05D001517 ORTHO05D001424 7.0e-07 58.5 54 57.4
Gorai.002G003500 Gossypium raimondii HOM05D001517 ORTHO05D001424 7.0e-07 58.5 54 55.6
MD02G1130700 Malus domestica HOM05D001517 ORTHO05D001424 7.0e-07 58.5 59 50.8
Rhsim11G0190900 Rhododendron simsii HOM05D001517 ORTHO05D001424 7.0e-07 58.5 42 69.0
ATR0584G272 Amborella trichopoda HOM05D001517 ORTHO05D001424 9.1e-07 58.2 46 56.5
AT2G21060 Arabidopsis thaliana HOM05D001517 ORTHO05D001424 9.1e-07 58.2 55 58.2
BcaC06g35287 Brassica carinata HOM05D001517 ORTHO05D001424 9.1e-07 58.2 49 61.2
C07p17790 Brassica napus HOM05D001517 ORTHO05D001424 9.1e-07 58.2 49 61.2
BolC7t42285H Brassica oleracea HOM05D001517 ORTHO05D001424 9.1e-07 58.2 49 61.2
Oeu006674.1 Olea europaea HOM05D001517 ORTHO05D001424 9.1e-07 58.2 54 57.4
Os08g0129200 Oryza sativa ssp. japonica HOM05D001517 ORTHO05D001424 9.1e-07 58.2 48 54.2
Sed0020116 Sechium edule HOM05D001517 ORTHO05D001424 9.1e-07 58.2 46 58.7
Actinidia23684 Actinidia chinensis HOM05D001517 ORTHO05D001424 1.2e-06 57.8 51 54.9
AL7G10570 Arabidopsis lyrata HOM05D001517 ORTHO05D001424 1.2e-06 57.8 48 60.4
A09p58550 Brassica napus HOM05D001517 ORTHO05D001424 1.2e-06 57.8 48 60.4
BraA09t41242Z Brassica rapa HOM05D001517 ORTHO05D001424 1.2e-06 57.8 48 60.4
Carub.0004s0009 Capsella rubella HOM05D001517 ORTHO05D001424 1.2e-06 57.8 48 62.5
HanXRQChr04g0112791 Helianthus annuus HOM05D001517 ORTHO05D001424 1.2e-06 57.8 48 58.3
HanXRQChr17g0553881 Helianthus annuus HOM05D001517 ORTHO05D001424 1.2e-06 57.8 51 54.9
Oeu063292.1 Olea europaea HOM05D001517 ORTHO05D001424 1.2e-06 57.8 51 52.9
Prupe.8G163000 Prunus persica HOM05D001517 ORTHO05D001424 1.2e-06 57.8 46 56.5
PGR142G2913 Punica granatum HOM05D001517 ORTHO05D001424 1.2e-06 57.8 48 58.3
HPP92_013008 Vanilla planifolia HOM05D001517 ORTHO05D001424 1.2e-06 57.8 48 58.3
Ca_19047_v3 Cicer arietinum L. HOM05D001517 ORTHO05D001424 1.5e-06 57.4 40 65.0
MCO11G280 Micromonas commoda HOM05D001517 ORTHO05D001424 1.5e-06 57.4 60 51.7
Potri.009G132000 Populus trichocarpa HOM05D001517 ORTHO05D001424 1.5e-06 57.4 51 54.9
C08p41850 Brassica napus HOM05D001517 ORTHO05D001424 2.0e-06 57.0 48 60.4
BolC8t51748H Brassica oleracea HOM05D001517 ORTHO05D001424 2.0e-06 57.0 48 60.4
FvH4_2g01580 Fragaria vesca HOM05D001517 ORTHO05D001424 2.0e-06 57.0 54 51.9
FAN15G2017 Fragaria x ananassa HOM05D001517 ORTHO05D001424 2.0e-06 57.0 54 51.9
FAN20G2183 Fragaria x ananassa HOM05D001517 ORTHO05D001424 2.0e-06 57.0 54 51.9
FAN24G0278 Fragaria x ananassa HOM05D001517 ORTHO05D001424 2.0e-06 57.0 54 51.9
FAN27G2057 Fragaria x ananassa HOM05D001517 ORTHO05D001424 2.0e-06 57.0 54 51.9
Gohir.A01G003100 Gossypium hirsutum HOM05D001517 ORTHO05D001424 2.0e-06 57.0 51 54.9
Nn1g08686 Nelumbo nucifera HOM05D001517 ORTHO05D001424 2.0e-06 57.0 45 60.0
PSO541G1887 Papaver somniferum HOM05D001517 ORTHO05D001424 2.0e-06 57.0 47 55.3
RcHm_v2.0_Chr6g0244251 Rosa chinensis HOM05D001517 ORTHO05D001424 2.0e-06 57.0 54 51.9
CANSAT25G3524 Cannabis sativa HOM05D001517 ORTHO05D001424 2.6e-06 56.6 53 50.9
Dinv41961 Davidia involucrata HOM05D001517 ORTHO05D001424 2.6e-06 56.6 48 54.2
HanXRQChr15g0478571 Helianthus annuus HOM05D001517 ORTHO05D001424 2.6e-06 56.6 48 54.2
Ah.01g008750 Amaranthus hybridus HOM05D001517 ORTHO05D001424 3.5e-06 56.2 48 58.3
Lj7P329T10 Lonicera japonica HOM05D001517 ORTHO05D001424 3.5e-06 56.2 63 50.8
Potri.004G172600 Populus trichocarpa HOM05D001517 ORTHO05D001424 3.5e-06 56.2 54 53.7
Ah.01g022780 Amaranthus hybridus HOM05D001517 ORTHO05D001424 4.5e-06 55.8 48 56.2
EL10Ac9g21411 Beta vulgaris HOM05D001517 ORTHO05D001424 4.5e-06 55.8 48 56.2
Cpa.g.sc6.261 Carica papaya HOM05D001517 ORTHO05D001424 4.5e-06 55.8 75 44.0
AUR62013061 Chenopodium quinoa HOM05D001517 ORTHO05D001424 4.5e-06 55.8 51 54.9
Dinv04947 Davidia involucrata HOM05D001517 ORTHO05D001424 4.5e-06 55.8 46 54.3
Sed0013765 Sechium edule HOM05D001517 ORTHO05D001424 4.5e-06 55.8 67 46.3
TAR625G1220 Trochodendron aralioides HOM05D001517 ORTHO05D001424 4.5e-06 55.8 75 44.0
Aa31LG6G16500 Aethionema arabicum HOM05D001517 ORTHO05D001424 5.9e-06 55.5 48 60.4
Gorai.005G253200 Gossypium raimondii HOM05D001517 ORTHO05D001424 5.9e-06 55.5 46 60.9
HanXRQChr17g0543861 Helianthus annuus HOM05D001517 ORTHO05D001424 5.9e-06 55.5 48 54.2
MD10G1121500 Malus domestica HOM05D001517 ORTHO05D001424 5.9e-06 55.5 54 53.7
RcHm_v2.0_Chr2g0099321 Rosa chinensis HOM05D001517 ORTHO05D001424 5.9e-06 55.5 57 49.1
ClCG02G004220 Citrullus lanatus HOM05D001517 ORTHO05D001424 7.7e-06 55.1 46 58.7
MELO3C013368.2 Cucumis melo HOM05D001517 ORTHO05D001424 7.7e-06 55.1 46 58.7
CsaV3_7G000900 Cucumis sativus L. HOM05D001517 ORTHO05D001424 7.7e-06 55.1 46 58.7
SalBow6G5337 Salvia bowleyana HOM05D001517 ORTHO05D001424 7.7e-06 55.1 60 46.7


User provided reference genes

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