Gene: CDE08G0678
General Information
Structural Information
- Species Ceratophyllum demersum
- Gene Identifier CDE08G0678
- Transcript Identifier CDE08G0678.1
- Gene Type Coding gene
- Location 6 : 17966934-17983770 : positive
Gene Family Information
- ID HOM05D003838
- #Genes/#Species 181/92
- Phylogenetic origin
- ID ORTHO05D004444
- #Genes/#Species 180/92
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- name gene_prefix06028
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006396 | ISO | PLAZA Integrative Orthology | RNA processing | AT1G05970 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0008270 | IEA | InterPro | zinc ion binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0032991 | ISO | PLAZA Integrative Orthology | protein-containing complex | AT1G05970 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR002059 | Cold-shock protein, DNA-binding |
| IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| IPR036875 | Zinc finger, CCHC-type superfamily |
| IPR000504 | RNA recognition motif domain |
| IPR035979 | RNA-binding domain superfamily |
| IPR011129 | Cold shock domain |
| IPR001878 | Zinc finger, CCHC-type |
| IPR012340 | Nucleic acid-binding, OB-fold |
| Mapman id | Description |
|---|---|
| 12.5.2.5.2 | Chromatin organisation.DNA methylation.RNA-independent DNA methylation.ASI1-AIPP1-EDM2 chromatin silencing regulator complex.component AIPP1/EDM3 |
| 16.7.1 | RNA processing.RNA chaperone activities.RNA chaperone (CSP) |
| 26.4.3.2 | External stimuli response.temperature.cold response.cold-responsive mRNA chaperone (CSD) |