Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G216.1 Capsicum annuum HOM05D005026 ORTHO05D005981 2.0e-172 609.0 311 100.0
PGSC0003DMG400026715 Solanum tuberosum HOM05D005026 ORTHO05D005981 1.3e-158 563.1 311 92.3
Sopen10g025430 Solanum pennellii HOM05D005026 ORTHO05D005981 8.3e-158 560.5 311 91.3
Solyc10g055640.2 Solanum lycopersicum HOM05D005026 ORTHO05D005981 1.4e-157 559.7 311 91.3
Nitab4.5_0005236g0010 Nicotiana tabacum HOM05D005026 ORTHO05D005981 3.3e-154 548.5 311 90.4
Peaxi162Scf00042g00232 Petunia axillaris HOM05D005026 ORTHO05D005981 2.7e-148 528.9 310 87.7
Nitab4.5_0002763g0050 Nicotiana tabacum HOM05D005026 ORTHO05D005981 6.0e-148 527.7 311 88.4
PGSC0003DMG400010588 Solanum tuberosum HOM05D005026 ORTHO05D005981 2.6e-135 485.7 313 82.1
CSS0005811 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 3.2e-133 478.8 311 78.5
Sopen07g025840 Solanum pennellii HOM05D005026 ORTHO05D005981 6.2e-129 464.5 313 78.3
CsaV3_2G016150 Cucumis sativus L. HOM05D005026 ORTHO05D005981 5.3e-128 461.5 316 76.3
GSVIVG01024009001 Vitis vinifera HOM05D005026 ORTHO05D005981 6.9e-128 461.1 314 77.4
MELO3C020824.2 Cucumis melo HOM05D005026 ORTHO05D005981 1.5e-127 459.9 316 75.9
ClCG02G011990 Citrullus lanatus HOM05D005026 ORTHO05D005981 3.4e-127 458.8 316 75.3
Actinidia21465 Actinidia chinensis HOM05D005026 ORTHO05D005981 4.5e-127 458.4 311 76.2
Atru.chr5.3373 Acer truncatum HOM05D005026 ORTHO05D005981 2.2e-126 456.1 312 76.9
Hma1.2p1_0163F.1_g072550 Hydrangea macrophylla HOM05D005026 ORTHO05D005981 2.2e-126 456.1 311 74.9
PGR142G1000 Punica granatum HOM05D005026 ORTHO05D005981 8.4e-126 454.1 320 73.1
Cc09_g09870 Coffea canephora HOM05D005026 ORTHO05D005981 1.1e-125 453.8 311 74.9
Oeu032531.1 Olea europaea HOM05D005026 ORTHO05D005981 3.2e-125 452.2 314 74.2
Sed0002674 Sechium edule HOM05D005026 ORTHO05D005981 2.1e-124 449.5 316 74.1
Rhsim05G0054500 Rhododendron simsii HOM05D005026 ORTHO05D005981 2.7e-124 449.1 311 74.6
vmacro17340 Vaccinium macrocarpon HOM05D005026 ORTHO05D005981 2.7e-124 449.1 311 74.3
Potri.004G176200 Populus trichocarpa HOM05D005026 ORTHO05D005981 3.5e-124 448.7 311 76.8
Sed0021554 Sechium edule HOM05D005026 ORTHO05D005981 6.0e-124 448.0 316 73.1
Thecc.02G058400 Theobroma cacao HOM05D005026 ORTHO05D005981 7.9e-124 447.6 311 75.6
COL.COLO4_17353 Corchorus olitorius HOM05D005026 ORTHO05D005981 3.0e-123 445.7 309 75.7
Ciclev10028903m.g Citrus clementina HOM05D005026 ORTHO05D005981 1.1e-122 443.7 308 74.7
Eucgr.I01430 Eucalyptus grandis HOM05D005026 ORTHO05D005981 1.1e-122 443.7 315 74.9
TAR629G1604 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.1e-122 443.7 313 74.1
MSTRG.16919 Avicennia marina HOM05D005026 ORTHO05D005981 1.5e-122 443.4 308 74.4
ECA234G1034 Erigeron canadensis HOM05D005026 ORTHO05D005981 1.5e-122 443.4 311 73.6
Gohir.A01G169500 Gossypium hirsutum HOM05D005026 ORTHO05D005981 4.3e-122 441.8 314 75.2
Sabra04G0118300 Salix brachista HOM05D005026 ORTHO05D005981 4.3e-122 441.8 311 75.9
Gohir.D01G160600 Gossypium hirsutum HOM05D005026 ORTHO05D005981 7.4e-122 441.0 314 75.2
Gorai.002G199000 Gossypium raimondii HOM05D005026 ORTHO05D005981 7.4e-122 441.0 314 75.2
Nn3g19196 Nelumbo nucifera HOM05D005026 ORTHO05D005981 1.3e-121 440.3 313 73.8
HanXRQChr10g0300841 Helianthus annuus HOM05D005026 ORTHO05D005981 3.7e-121 438.7 311 72.0
Manes.11G096700 Manihot esculenta HOM05D005026 ORTHO05D005981 3.7e-121 438.7 311 74.3
DCAR_022946 Daucus carota HOM05D005026 ORTHO05D005981 6.2e-121 438.0 317 71.9
Gohir.D04G167700 Gossypium hirsutum HOM05D005026 ORTHO05D005981 8.2e-121 437.6 314 74.8
Gorai.012G156000 Gossypium raimondii HOM05D005026 ORTHO05D005981 8.2e-121 437.6 314 74.8
PSO782G1462 Papaver somniferum HOM05D005026 ORTHO05D005981 1.4e-120 436.8 307 74.3
Gohir.A04G131300 Gossypium hirsutum HOM05D005026 ORTHO05D005981 1.8e-120 436.4 313 75.1
EL10Ac9g21369 Beta vulgaris HOM05D005026 ORTHO05D005981 3.1e-120 435.6 308 72.7
AUR62010035 Chenopodium quinoa HOM05D005026 ORTHO05D005981 6.9e-120 434.5 318 73.3
AUR62013023 Chenopodium quinoa HOM05D005026 ORTHO05D005981 9.0e-120 434.1 315 73.3
Lsat_1_v5_gn_4_71761 Lactuca sativa HOM05D005026 ORTHO05D005981 9.0e-120 434.1 311 72.7
unitig_578.g16751 Utricularia gibba HOM05D005026 ORTHO05D005981 9.0e-120 434.1 305 74.4
Aqoxy3G02662 Aquilegia oxysepala HOM05D005026 ORTHO05D005981 5.8e-119 431.4 323 71.2
Cfa005253 Carpinus fangiana HOM05D005026 ORTHO05D005981 1.0e-118 430.6 311 73.0
PSO063G0001 Papaver somniferum HOM05D005026 ORTHO05D005981 1.0e-118 430.6 307 73.6
Prupe.8G166600 Prunus persica HOM05D005026 ORTHO05D005981 1.0e-118 430.6 311 71.7
Lalb_Chr06g0163661 Lupinus albus HOM05D005026 ORTHO05D005981 3.8e-118 428.7 313 70.3
QL11p050624 Quercus lobata HOM05D005026 ORTHO05D005981 4.9e-118 428.3 310 71.9
QL11p050879 Quercus lobata HOM05D005026 ORTHO05D005981 4.9e-118 428.3 310 71.9
TWI79G0831 Tripterygium wilfordii HOM05D005026 ORTHO05D005981 6.5e-118 427.9 311 74.3
Migut.N01326 Erythranthe guttata HOM05D005026 ORTHO05D005981 1.1e-117 427.2 311 73.0
arahy.Tifrunner.gnm1.ann1.Y470YU Arachis hypogaea HOM05D005026 ORTHO05D005981 1.4e-117 426.8 312 71.2
CiPaw.05G083000 Carya illinoinensis HOM05D005026 ORTHO05D005981 1.4e-117 426.8 311 71.7
FvH4_2g15441 Fragaria vesca HOM05D005026 ORTHO05D005981 2.5e-117 426.0 319 69.0
FAN24G0982 Fragaria x ananassa HOM05D005026 ORTHO05D005981 2.5e-117 426.0 319 69.0
Glyma.10G281500 Glycine max HOM05D005026 ORTHO05D005981 7.1e-117 424.5 315 70.5
VMungo0720G0105 Vigna mungo HOM05D005026 ORTHO05D005981 1.6e-116 423.3 316 68.4
Phvul.007G019200 Phaseolus vulgaris HOM05D005026 ORTHO05D005981 2.7e-116 422.5 324 68.2
Glyma.20G107700 Glycine max HOM05D005026 ORTHO05D005981 3.5e-116 422.2 316 69.9
CARHR107140 Cardamine hirsuta HOM05D005026 ORTHO05D005981 6.1e-116 421.4 311 70.1
arahy.Tifrunner.gnm1.ann1.UBN13B Arachis hypogaea HOM05D005026 ORTHO05D005981 7.9e-116 421.0 312 70.5
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 7.9e-116 421.0 312 70.2
RcHm_v2.0_Chr6g0278411 Rosa chinensis HOM05D005026 ORTHO05D005981 7.9e-116 421.0 322 68.0
Lalb_Chr02g0143411 Lupinus albus HOM05D005026 ORTHO05D005981 1.0e-115 420.6 320 67.5
BcaC06g36185 Brassica carinata HOM05D005026 ORTHO05D005981 2.3e-115 419.5 311 71.1
C07p06780 Brassica napus HOM05D005026 ORTHO05D005981 2.3e-115 419.5 311 71.1
BolC7t41099H Brassica oleracea HOM05D005026 ORTHO05D005981 2.3e-115 419.5 311 71.1
Ah.01g008260 Amaranthus hybridus HOM05D005026 ORTHO05D005981 3.0e-115 419.1 351 65.8
Lj5g0027913 Lotus japonicus HOM05D005026 ORTHO05D005981 6.7e-115 417.9 312 68.6
CANSAT78G2332 Cannabis sativa HOM05D005026 ORTHO05D005981 1.1e-114 417.2 314 69.1
SalBow1G5110 Salvia bowleyana HOM05D005026 ORTHO05D005981 1.5e-114 416.8 311 69.8
A07p04280 Brassica napus HOM05D005026 ORTHO05D005981 2.5e-114 416.0 311 70.1
BraA07t28219Z Brassica rapa HOM05D005026 ORTHO05D005981 2.5e-114 416.0 311 70.1
Carub.0003s3066 Capsella rubella HOM05D005026 ORTHO05D005981 4.3e-114 415.2 311 69.8
BcaB03g16411 Brassica carinata HOM05D005026 ORTHO05D005981 7.4e-114 414.5 311 70.1
Ca_11210_v3 Cicer arietinum L. HOM05D005026 ORTHO05D005981 1.3e-113 413.7 312 68.3
AT2G16860 Arabidopsis thaliana HOM05D005026 ORTHO05D005981 1.6e-113 413.3 311 69.5
MD05G1122700 Malus domestica HOM05D005026 ORTHO05D005981 2.2e-113 412.9 311 70.1
Thhalv10022788m.g Eutrema salsugineum HOM05D005026 ORTHO05D005981 2.8e-113 412.5 313 70.3
Duzib132G0031 Durio zibethinus HOM05D005026 ORTHO05D005981 6.3e-113 411.4 352 64.2
AL3G49570 Arabidopsis lyrata HOM05D005026 ORTHO05D005981 1.4e-112 410.2 311 69.1
Sp3g30150 Schrenkiella parvula HOM05D005026 ORTHO05D005981 1.4e-112 410.2 312 69.2
CDE04G3302 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 2.6e-111 406.0 320 67.2
Cpa.g.sc20.93 Carica papaya HOM05D005026 ORTHO05D005981 4.5e-111 405.2 248 84.3
Medtr1g112640 Medicago truncatula HOM05D005026 ORTHO05D005981 1.3e-110 403.7 314 66.6
TPR.G2421 Trifolium pratense HOM05D005026 ORTHO05D005981 5.0e-110 401.7 329 66.9
Sc18g0006400 Simmondsia chinensis HOM05D005026 ORTHO05D005981 4.2e-109 398.7 314 69.1
THA.LOC104819652 Tarenaya hassleriana HOM05D005026 ORTHO05D005981 2.3e-107 392.9 311 67.8
Haze_02129 Corylus avellana HOM05D005026 ORTHO05D005981 1.5e-106 390.2 291 71.1
Oeu015515.5 Olea europaea HOM05D005026 ORTHO05D005981 2.0e-106 389.8 334 64.1
Nn1g09206 Nelumbo nucifera HOM05D005026 ORTHO05D005981 1.5e-103 380.2 224 84.8
MBI02_g23401_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 3.4e-103 379.0 289 69.2
Lj5A178G71 Lonicera japonica HOM05D005026 ORTHO05D005981 5.9e-103 378.3 270 75.9
Os06g0711600 Oryza sativa ssp. japonica HOM05D005026 ORTHO05D005981 2.5e-101 372.9 331 61.9
Ah.01g023090 Amaranthus hybridus HOM05D005026 ORTHO05D005981 4.2e-101 372.1 262 75.2
Zm00001eb272560 Zea mays HOM05D005026 ORTHO05D005981 7.9e-100 367.9 339 59.9
CDE06G2829 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 1.1e-98 364.0 257 73.9
Sc14g0002280 Simmondsia chinensis HOM05D005026 ORTHO05D005981 2.8e-97 359.4 317 63.4
Zm00001eb227710 Zea mays HOM05D005026 ORTHO05D005981 1.1e-96 357.5 340 59.1
Actinidia28532 Actinidia chinensis HOM05D005026 ORTHO05D005981 1.2e-95 354.0 265 72.1
HanXRQChr10g0300791 Helianthus annuus HOM05D005026 ORTHO05D005981 1.7e-94 350.1 203 85.2
Mapoly0011s0013 Marchantia polymorpha HOM05D005026 ORTHO05D005981 4.2e-93 345.5 309 59.2
Pp3c18_8200 Physcomitrium patens HOM05D005026 ORTHO05D005981 4.7e-92 342.0 322 57.1
ATR0665G437 Amborella trichopoda HOM05D005026 ORTHO05D005981 1.8e-91 340.1 211 80.6
Peaxi162Scf00042g02315 Petunia axillaris HOM05D005026 ORTHO05D005981 2.0e-90 336.7 376 53.7
FAN20G3067 Fragaria x ananassa HOM05D005026 ORTHO05D005981 7.0e-88 328.2 267 64.8
SMO143G0164 Selaginella moellendorffii HOM05D005026 ORTHO05D005981 2.9e-86 322.8 311 56.9
Sed0003938 Sechium edule HOM05D005026 ORTHO05D005981 4.2e-85 318.9 315 57.5
Ciclev10023429m.g Citrus clementina HOM05D005026 ORTHO05D005981 7.2e-85 318.2 244 68.4
RcHm_v2.0_Chr1g0323251 Rosa chinensis HOM05D005026 ORTHO05D005981 8.8e-83 311.2 311 55.6
HanXRQChr05g0128751 Helianthus annuus HOM05D005026 ORTHO05D005981 2.4e-80 303.1 185 81.6
CAN.G641.54 Capsicum annuum HOM05D005026 ORTHO05D005981 4.2e-77 292.4 230 73.5
Sopen08g021400 Solanum pennellii HOM05D005026 ORTHO05D005981 5.5e-77 292.0 250 69.2
Solyc08g067460.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 4.7e-68 262.3 191 79.1
Aa31LG8G14070 Aethionema arabicum HOM05D005026 ORTHO05D005981 1.8e-67 260.4 294 51.7
CBR_g18651 Chara braunii HOM05D005026 ORTHO05D005981 8.3e-65 251.5 275 54.9
Solyc07g052200.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 1.4e-64 250.8 313 52.1
HanXRQChr10g0300831 Helianthus annuus HOM05D005026 ORTHO05D005981 7.3e-53 211.8 189 59.8
PGSC0003DMG400010589 Solanum tuberosum HOM05D005026 ORTHO05D005981 2.0e-50 203.8 278 50.7
Duzib052G0155 Durio zibethinus HOM05D005026 ORTHO05D005981 8.3e-49 198.4 117 85.5
Cre01.g037400 Chlamydomonas reinhardtii HOM05D000144 ORTHO05D005981 3.2e-48 196.4 226 47.8
MCO14G518 Micromonas commoda HOM05D000144 ORTHO05D005981 2.6e-42 176.8 247 44.5
Psat0s3098g0080 Pisum sativum HOM05D005026 ORTHO05D005981 4.9e-41 172.6 192 51.6
AagrBONN_evm.TU.Sc2ySwM_344.1326 Anthoceros agrestis HOM05D005026 ORTHO05D005981 3.2e-40 169.9 206 48.5
HPP92_003763 Vanilla planifolia HOM05D005026 ORTHO05D005981 3.2e-40 169.9 122 72.1
TAR624G0954 Trochodendron aralioides HOM05D005026 ORTHO05D005981 3.0e-38 163.3 95 85.3
CSS0001365 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 3.6e-36 156.4 126 65.9
CSS0005878 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 3.6e-36 156.4 126 65.9
BcaB03g16410 Brassica carinata HOM05D005026 ORTHO05D005981 4.7e-36 156.0 96 85.4
HPP92_021456 Vanilla planifolia HOM05D005026 ORTHO05D005981 1.8e-35 154.1 122 68.0
Actinidia00627 Actinidia chinensis HOM05D005026 ORTHO05D005981 5.8e-34 149.1 93 83.9
PGSC0003DMG400028947 Solanum tuberosum HOM05D005026 ORTHO05D005981 1.2e-31 141.4 80 91.2
RcHm_v2.0_Chr2g0134101 Rosa chinensis HOM05D005026 ORTHO05D005981 1.1e-29 134.8 190 43.7
PRCOL_00006468 Prasinoderma coloniale HOM05D000144 ORTHO05D334079 7.6e-26 122.1 241 38.6
RcHm_v2.0_Chr6g0295751 Rosa chinensis HOM05D005026 ORTHO05D005981 1.9e-24 117.5 149 47.7
HPP92_021472 Vanilla planifolia HOM05D005026 ORTHO05D005981 2.7e-23 113.6 99 63.6
TAR624G1238 Trochodendron aralioides HOM05D005026 ORTHO05D005981 9.6e-21 105.1 92 64.1
TAR624G0203 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.2e-18 98.2 61 82.0
Nn1g09215 Nelumbo nucifera HOM05D005026 ORTHO05D005981 2.9e-09 67.0 41 70.7
Dinv14115 Davidia involucrata HOM05D005026 ORTHO05D005981 3.8e-09 66.6 36 80.6
MBI18_g05076_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 5.5e-08 62.8 43 69.8
Psat6g231960 Pisum sativum HOM05D005026 ORTHO05D005981 2.1e-07 60.8 128 35.2
Pp3c21_12130 Physcomitrium patens HOM05D005026 ORTHO05D005981 3.5e-07 60.1 62 56.5
Rhsim10G0139600 Rhododendron simsii HOM05D000038 ORTHO05D000143 1.0e-06 58.5 57 61.4
MBI11_g10320_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 2.3e-06 57.4 40 55.0


User provided reference genes

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