Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G203.13 Capsicum annuum HOM05D002725 ORTHO05D115172 1.6e-64 249.2 122 100.0
CAN.G44.7 Capsicum annuum HOM05D002725 ORTHO05D003279 2.6e-46 188.7 123 80.5
Nitab4.5_0009767g0020 Nicotiana tabacum HOM05D002725 ORTHO05D003279 7.3e-17 90.9 102 50.0
Hma1.2p1_0867F.1_g230300 Hydrangea macrophylla HOM05D002725 ORTHO05D003279 1.3e-16 90.1 141 43.3
CiPaw.14G100600 Carya illinoinensis HOM05D002725 ORTHO05D003279 8.1e-16 87.4 141 42.6
GSVIVG01020223001 Vitis vinifera HOM05D002725 ORTHO05D003279 8.1e-16 87.4 141 42.6
Haze_12164 Corylus avellana HOM05D002725 ORTHO05D003279 1.1e-15 87.0 141 41.8
Hund25340 Selenicereus undatus HOM05D002725 ORTHO05D003279 1.1e-15 87.0 117 45.3
Aqoxy3G02968 Aquilegia oxysepala HOM05D002725 ORTHO05D003279 1.4e-15 86.7 141 41.8
Nn3g16917 Nelumbo nucifera HOM05D002725 ORTHO05D003279 1.4e-15 86.7 141 41.8
QL03p061701 Quercus lobata HOM05D002725 ORTHO05D003279 1.4e-15 86.7 141 42.6
Sabra02G0137700 Salix brachista HOM05D002725 ORTHO05D003279 1.4e-15 86.7 141 41.8
AagrBONN_evm.TU.Sc2ySwM_344.2036 Anthoceros agrestis HOM05D002725 ORTHO05D003279 2.4e-15 85.9 141 41.1
ClCG05G025230 Citrullus lanatus HOM05D002725 ORTHO05D003279 2.4e-15 85.9 117 44.4
Peaxi162Scf00301g00128 Petunia axillaris HOM05D002725 ORTHO05D003279 2.4e-15 85.9 105 50.5
MD02G1186000 Malus domestica HOM05D002725 ORTHO05D003279 3.1e-15 85.5 141 42.6
Manes.12G030200 Manihot esculenta HOM05D002725 ORTHO05D003279 3.1e-15 85.5 141 42.6
Prupe.6G220500 Prunus persica HOM05D002725 ORTHO05D003279 3.1e-15 85.5 141 42.6
Actinidia01708 Actinidia chinensis HOM05D002725 ORTHO05D003279 4.0e-15 85.1 141 42.6
EL10Ac6g13658 Beta vulgaris HOM05D002725 ORTHO05D003279 4.0e-15 85.1 141 41.8
Ciclev10031363m.g Citrus clementina HOM05D002725 ORTHO05D003279 4.0e-15 85.1 141 41.8
Manes.13G031300 Manihot esculenta HOM05D002725 ORTHO05D003279 4.0e-15 85.1 105 48.6
Potri.002G176000 Populus trichocarpa HOM05D002725 ORTHO05D003279 4.0e-15 85.1 141 41.8
TAR629G1020 Trochodendron aralioides HOM05D002725 ORTHO05D003279 4.0e-15 85.1 142 41.5
Zm00001eb074440 Zea mays HOM05D002725 ORTHO05D003279 4.0e-15 85.1 117 45.3
CiPaw.05G149700 Carya illinoinensis HOM05D002725 ORTHO05D003279 6.9e-15 84.3 141 41.8
unitig_22.g6933 Utricularia gibba HOM05D002725 ORTHO05D003279 6.9e-15 84.3 116 44.8
Dinv24871 Davidia involucrata HOM05D002725 ORTHO05D003279 9.0e-15 84.0 141 41.8
PGR119G1015 Punica granatum HOM05D002725 ORTHO05D003279 9.0e-15 84.0 141 41.8
Sed0004453 Sechium edule HOM05D002725 ORTHO05D003279 9.0e-15 84.0 142 42.3
MSTRG.7887 Avicennia marina HOM05D002725 ORTHO05D003279 1.2e-14 83.6 105 47.6
MELO3C012005.2 Cucumis melo HOM05D002725 ORTHO05D003279 1.2e-14 83.6 117 43.6
CsaV3_5G031650 Cucumis sativus L. HOM05D002725 ORTHO05D003279 1.2e-14 83.6 117 43.6
Duzib106G0624 Durio zibethinus HOM05D002725 ORTHO05D003279 1.2e-14 83.6 141 41.8
Duzib268G0345 Durio zibethinus HOM05D002725 ORTHO05D003279 1.2e-14 83.6 141 41.8
Os04g0555400 Oryza sativa ssp. japonica HOM05D002725 ORTHO05D003279 1.2e-14 83.6 117 44.4
PSO063G5148 Papaver somniferum HOM05D002725 ORTHO05D003279 1.2e-14 83.6 105 48.6
PSO832G2366 Papaver somniferum HOM05D002725 ORTHO05D003279 1.2e-14 83.6 105 48.6
Psat3g161280 Pisum sativum HOM05D002725 ORTHO05D003279 1.2e-14 83.6 141 41.8
Potri.014G102800 Populus trichocarpa HOM05D002725 ORTHO05D003279 1.2e-14 83.6 105 47.6
Ah.02g129870 Amaranthus hybridus HOM05D002725 ORTHO05D003279 1.5e-14 83.2 141 41.8
AUR62005361 Chenopodium quinoa HOM05D002725 ORTHO05D003279 1.5e-14 83.2 141 41.1
Gohir.A03G140600 Gossypium hirsutum HOM05D002725 ORTHO05D003279 1.5e-14 83.2 141 41.1
Gohir.D02G163400 Gossypium hirsutum HOM05D002725 ORTHO05D003279 1.5e-14 83.2 141 41.1
Gorai.005G183400 Gossypium raimondii HOM05D002725 ORTHO05D003279 1.5e-14 83.2 141 41.1
MBI10_g36211_MAGBIO Magnolia biondii HOM05D002725 ORTHO05D003279 1.5e-14 83.2 135 43.0
Os07g0141600 Oryza sativa ssp. japonica HOM05D002725 ORTHO05D003279 1.5e-14 83.2 117 43.6
SalBow2G2496 Salvia bowleyana HOM05D002725 ORTHO05D003279 1.5e-14 83.2 141 41.8
TPR.G9070 Trifolium pratense HOM05D002725 ORTHO05D003279 1.5e-14 83.2 141 41.8
AagrBONN_evm.TU.Sc2ySwM_368.3392 Anthoceros agrestis HOM05D002725 ORTHO05D003279 2.0e-14 82.8 141 41.1
Cc11_g14540 Coffea canephora HOM05D002725 ORTHO05D003279 2.0e-14 82.8 136 41.9
CAN.G1178.23 Capsicum annuum HOM05D002725 ORTHO05D003279 2.6e-14 82.4 105 48.6
Cpa.g.sc824.3 Carica papaya HOM05D002725 ORTHO05D003279 2.6e-14 82.4 117 45.3
AUR62014016 Chenopodium quinoa HOM05D002725 ORTHO05D003279 2.6e-14 82.4 136 40.4
Mapoly0042s0037 Marchantia polymorpha HOM05D002725 ORTHO05D003279 2.6e-14 82.4 141 41.1
Prupe.5G061600 Prunus persica HOM05D002725 ORTHO05D003279 2.6e-14 82.4 141 41.8
CSS0011985 Camellia sinensis var. sinensis HOM05D002725 ORTHO05D003279 3.4e-14 82.0 117 43.6
CSS0030976 Camellia sinensis var. sinensis HOM05D002725 ORTHO05D003279 3.4e-14 82.0 117 43.6
Medtr7g037560 Medicago truncatula HOM05D002725 ORTHO05D003279 3.4e-14 82.0 117 44.4
Nitab4.5_0001381g0050 Nicotiana tabacum HOM05D002725 ORTHO05D003279 3.4e-14 82.0 105 47.6
Nitab4.5_0002289g0110 Nicotiana tabacum HOM05D002725 ORTHO05D003279 3.4e-14 82.0 105 47.6
RcHm_v2.0_Chr2g0108041 Rosa chinensis HOM05D002725 ORTHO05D003279 3.4e-14 82.0 117 44.4
Solyc08g078430.4 Solanum lycopersicum HOM05D002725 ORTHO05D003279 3.4e-14 82.0 105 48.6
Sopen08g026920 Solanum pennellii HOM05D002725 ORTHO05D003279 3.4e-14 82.0 105 48.6
Thecc.02G244300 Theobroma cacao HOM05D002725 ORTHO05D003279 3.4e-14 82.0 105 46.7
TWI75G1526 Tripterygium wilfordii HOM05D002725 ORTHO05D003279 3.4e-14 82.0 117 44.4
FvH4_1g17710 Fragaria vesca HOM05D002725 ORTHO05D003279 4.5e-14 81.6 117 44.4
FAN19G1008 Fragaria x ananassa HOM05D002725 ORTHO05D003279 4.5e-14 81.6 117 44.4
FAN26G2216 Fragaria x ananassa HOM05D002725 ORTHO05D003279 4.5e-14 81.6 117 44.4
FAN28G0598 Fragaria x ananassa HOM05D002725 ORTHO05D003279 4.5e-14 81.6 117 44.4
PGSC0003DMG400004771 Solanum tuberosum HOM05D002725 ORTHO05D003279 4.5e-14 81.6 105 48.6
CANSAT56G0776 Cannabis sativa HOM05D002725 ORTHO05D003279 5.8e-14 81.3 141 41.8
CDE11G0115 Ceratophyllum demersum HOM05D002725 ORTHO05D003279 5.8e-14 81.3 141 40.4
MBI18_g25085_MAGBIO Magnolia biondii HOM05D002725 ORTHO05D003279 5.8e-14 81.3 135 42.2
Rhsim12G0121500 Rhododendron simsii HOM05D002725 ORTHO05D003279 5.8e-14 81.3 141 39.7
Eucgr.H02616 Eucalyptus grandis HOM05D002725 ORTHO05D003279 7.6e-14 80.9 141 40.4
Carub.0002s0508 Capsella rubella HOM05D002725 ORTHO05D003279 9.9e-14 80.5 121 43.8
Glyma.16G063000 Glycine max HOM05D002725 ORTHO05D003279 9.9e-14 80.5 141 39.7
Glyma.19G082500 Glycine max HOM05D002725 ORTHO05D003279 9.9e-14 80.5 141 39.7
BcaB04g20253 Brassica carinata HOM05D002725 ORTHO05D003279 1.3e-13 80.1 116 44.8
BcaC02g10686 Brassica carinata HOM05D002725 ORTHO05D003279 1.3e-13 80.1 116 44.8
BcaC09g49421 Brassica carinata HOM05D002725 ORTHO05D003279 1.3e-13 80.1 116 44.8
A01p29130 Brassica napus HOM05D002725 ORTHO05D003279 1.3e-13 80.1 116 44.8
C01p36870 Brassica napus HOM05D002725 ORTHO05D003279 1.3e-13 80.1 116 44.8
C05p51290 Brassica napus HOM05D002725 ORTHO05D003279 1.3e-13 80.1 116 44.8
BolC1t03648H Brassica oleracea HOM05D002725 ORTHO05D003279 1.3e-13 80.1 116 44.8
BolC4t24141H Brassica oleracea HOM05D002725 ORTHO05D003279 1.3e-13 80.1 116 44.8
BraA01t02981Z Brassica rapa HOM05D002725 ORTHO05D003279 1.3e-13 80.1 116 44.8
Migut.K01129 Erythranthe guttata HOM05D002725 ORTHO05D003279 1.3e-13 80.1 141 41.1
Lalb_Chr22g0360531 Lupinus albus HOM05D002725 ORTHO05D003279 1.3e-13 80.1 141 40.4
THA.LOC104812782 Tarenaya hassleriana HOM05D002725 ORTHO05D003279 1.3e-13 80.1 121 43.8
VMungo0464G0614 Vigna mungo HOM05D002725 ORTHO05D003279 1.7e-13 79.7 141 39.7
ATR0680G011 Amborella trichopoda HOM05D002725 ORTHO05D003279 2.2e-13 79.3 141 40.4
arahy.Tifrunner.gnm1.ann1.D69TB6 Arachis hypogaea HOM05D002725 ORTHO05D003279 2.2e-13 79.3 141 39.7
Ca_06608_v3 Cicer arietinum L. HOM05D002725 ORTHO05D003279 2.2e-13 79.3 141 39.7
Ca_25613_v3 Cicer arietinum L. HOM05D002725 ORTHO05D003279 2.2e-13 79.3 141 40.4
FAN23G0685 Fragaria x ananassa HOM05D002725 ORTHO05D003279 2.2e-13 79.3 120 44.2
Lj1g0003905 Lotus japonicus HOM05D002725 ORTHO05D003279 2.2e-13 79.3 117 43.6
AL2G16480 Arabidopsis lyrata HOM05D002725 ORTHO05D003279 2.9e-13 79.0 121 43.0
arahy.Tifrunner.gnm1.ann1.JTBU3D Arachis hypogaea HOM05D002725 ORTHO05D003279 2.9e-13 79.0 141 39.7
arahy.Tifrunner.gnm1.ann1.JXF13M Arachis hypogaea HOM05D002725 ORTHO05D003279 2.9e-13 79.0 141 39.7
arahy.Tifrunner.gnm1.ann1.LYET28 Arachis hypogaea HOM05D002725 ORTHO05D003279 2.9e-13 79.0 141 39.7
COL.COLO4_36975 Corchorus olitorius HOM05D002725 ORTHO05D003279 2.9e-13 79.0 105 45.7
DCAR_031095 Daucus carota HOM05D002725 ORTHO05D003279 2.9e-13 79.0 105 47.6
Aa31LG2G10130 Aethionema arabicum HOM05D002725 ORTHO05D003279 3.8e-13 78.6 121 44.6
CARHR292010 Cardamine hirsuta HOM05D002725 ORTHO05D003279 3.8e-13 78.6 121 43.0
Lsat_1_v5_gn_1_10560 Lactuca sativa HOM05D002725 ORTHO05D003279 3.8e-13 78.6 136 39.0
Lsat_1_v5_gn_8_158161 Lactuca sativa HOM05D002725 ORTHO05D003279 3.8e-13 78.6 136 39.0
CBR_g50945 Chara braunii HOM05D002725 ORTHO05D003279 4.9e-13 78.2 117 43.6
HanXRQChr08g0234721 Helianthus annuus HOM05D002725 ORTHO05D003279 4.9e-13 78.2 136 39.0
BcaC06g31807 Brassica carinata HOM05D002725 ORTHO05D003279 6.4e-13 77.8 121 43.0
ECA233G4284 Erigeron canadensis HOM05D002725 ORTHO05D003279 6.4e-13 77.8 136 39.7
AT1G60170 Arabidopsis thaliana HOM05D002725 ORTHO05D003279 1.1e-12 77.0 121 42.1
Phvul.003G041300 Phaseolus vulgaris HOM05D002725 ORTHO05D003279 1.1e-12 77.0 141 39.0
TAR371G0609 Trochodendron aralioides HOM05D002725 ORTHO05D003279 1.1e-12 77.0 99 47.5
Phvul.008G149300 Phaseolus vulgaris HOM05D002725 ORTHO05D003279 1.4e-12 76.6 141 39.0
THA.LOC104816751 Tarenaya hassleriana HOM05D002725 ORTHO05D003279 1.4e-12 76.6 121 43.0
Sp2g04490 Schrenkiella parvula HOM05D002725 ORTHO05D003279 1.9e-12 76.3 121 43.0
TPR.G37028 Trifolium pratense HOM05D002725 ORTHO05D003279 1.9e-12 76.3 141 38.3
HPP92_018031 Vanilla planifolia HOM05D002725 ORTHO05D003279 7.1e-12 74.3 117 44.4
SHI27131 Sapria himalayana HOM05D002725 ORTHO05D003279 1.2e-11 73.6 141 36.9
Oeu001743.1 Olea europaea HOM05D002725 ORTHO05D003279 2.1e-11 72.8 89 47.2
Thhalv10009759m.g Eutrema salsugineum HOM05D002725 ORTHO05D003279 3.5e-11 72.0 122 39.3
AL3G44040 Arabidopsis lyrata HOM05D002725 ORTHO05D003279 4.6e-11 71.6 104 43.3
TPR.G10571 Trifolium pratense HOM05D002725 ORTHO05D003279 6.0e-11 71.2 139 36.7
Sc14g0008580 Simmondsia chinensis HOM05D002725 ORTHO05D003279 7.9e-11 70.9 89 46.1
vmacro16261 Vaccinium macrocarpon HOM05D002725 ORTHO05D003279 1.8e-10 69.7 135 36.3
Peaxi162Scf01086g00013 Petunia axillaris HOM05D002725 ORTHO05D003279 3.9e-10 68.6 112 42.9
SMO139G0072 Selaginella moellendorffii HOM05D002725 ORTHO05D003279 3.9e-10 68.6 122 39.3
CAN.G78.53 Capsicum annuum HOM05D002725 ORTHO05D003279 1.5e-09 66.6 136 39.0
COL.COLO4_32664 Corchorus olitorius HOM05D002725 ORTHO05D003279 4.8e-08 61.6 102 38.2
PGSC0003DMG400000023 Solanum tuberosum HOM05D002725 ORTHO05D003279 8.1e-08 60.8 134 35.8
Nitab4.5_0001219g0140 Nicotiana tabacum HOM05D002725 ORTHO05D003279 1.4e-07 60.1 126 37.3
BcaC05g25456 Brassica carinata HOM05D002725 ORTHO05D003279 2.4e-07 59.3 125 37.6
C05p13400 Brassica napus HOM05D002725 ORTHO05D003279 2.4e-07 59.3 125 37.6
BolC5t30077H Brassica oleracea HOM05D002725 ORTHO05D003279 2.4e-07 59.3 125 37.6
Sed0011360 Sechium edule HOM05D002725 ORTHO05D003279 2.4e-07 59.3 128 35.2
Sopen01g038100 Solanum pennellii HOM05D002725 ORTHO05D003279 4.0e-07 58.5 134 35.1
Thhalv10003005m.g Eutrema salsugineum HOM05D002725 ORTHO05D003279 5.3e-07 58.2 98 37.8
QL06p007601 Quercus lobata HOM05D002725 ORTHO05D003279 9.0e-07 57.4 107 37.4
FAN18G3093 Fragaria x ananassa HOM05D002725 ORTHO05D003279 4.5e-06 55.1 122 38.5
A06p11270 Brassica napus HOM05D002725 ORTHO05D003279 5.8e-06 54.7 125 35.2
FAN04G1721 Fragaria x ananassa HOM05D002725 ORTHO05D003279 5.8e-06 54.7 54 51.9
Rhsim12G0147600 Rhododendron simsii HOM05D002725 ORTHO05D003052 5.8e-06 54.7 98 36.7
FvH4_5g18910 Fragaria vesca HOM05D002725 ORTHO05D003279 7.6e-06 54.3 54 51.9
BraA06t24307Z Brassica rapa HOM05D002725 ORTHO05D003279 1.0e-05 53.9 125 35.2


User provided reference genes

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