Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G20.6 Capsicum annuum HOM05D004712 ORTHO05D005306 6.4e-196 687.2 335 100.0
Peaxi162Scf00840g00117 Petunia axillaris HOM05D004712 ORTHO05D005306 7.4e-160 567.4 296 91.2
Sopen08g019580 Solanum pennellii HOM05D004712 ORTHO05D005306 1.9e-155 552.7 300 88.3
Solyc08g065880.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 2.4e-155 552.4 300 88.0
Nitab4.5_0005029g0040 Nicotiana tabacum HOM05D004712 ORTHO05D005306 6.9e-150 534.3 296 86.1
Nitab4.5_0000359g0220 Nicotiana tabacum HOM05D004712 ORTHO05D005306 2.2e-148 529.3 296 85.1
Prupe.1G416100 Prunus persica HOM05D004712 ORTHO05D005306 1.2e-138 496.9 299 79.6
Dinv23416 Davidia involucrata HOM05D004712 ORTHO05D005306 2.1e-138 496.1 299 77.9
TAR624G0834 Trochodendron aralioides HOM05D004712 ORTHO05D005306 2.7e-138 495.7 299 77.9
QL02p001773 Quercus lobata HOM05D004712 ORTHO05D005306 7.9e-138 494.2 299 79.3
COL.COLO4_21017 Corchorus olitorius HOM05D004712 ORTHO05D005306 1.3e-137 493.4 286 80.4
Atru.chr7.2032 Acer truncatum HOM05D004712 ORTHO05D005306 1.8e-137 493.0 288 78.1
Cc08_g10100 Coffea canephora HOM05D004712 ORTHO05D005306 2.3e-137 492.7 299 76.6
Migut.A00161 Erythranthe guttata HOM05D004712 ORTHO05D005306 3.0e-137 492.3 299 77.3
Ciclev10008867m.g Citrus clementina HOM05D004712 ORTHO05D005306 5.1e-137 491.5 288 78.8
GSVIVG01035336001 Vitis vinifera HOM05D004712 ORTHO05D005306 8.7e-137 490.7 299 76.9
Aqoxy7G03946 Aquilegia oxysepala HOM05D004712 ORTHO05D005306 1.5e-136 490.0 292 77.7
Duzib150G0899 Durio zibethinus HOM05D004712 ORTHO05D005306 1.5e-136 490.0 286 78.3
Gohir.A05G044400 Gossypium hirsutum HOM05D004712 ORTHO05D005306 1.9e-136 489.6 299 76.6
Nn6g35377 Nelumbo nucifera HOM05D004712 ORTHO05D005306 4.3e-136 488.4 299 76.6
Hund03367 Selenicereus undatus HOM05D004712 ORTHO05D005306 9.7e-136 487.3 286 79.7
Lalb_Chr22g0355941 Lupinus albus HOM05D004712 ORTHO05D005306 1.6e-135 486.5 302 74.5
SalBow4G3242 Salvia bowleyana HOM05D004712 ORTHO05D005306 2.2e-135 486.1 299 76.6
Gohir.D05G046000 Gossypium hirsutum HOM05D004712 ORTHO05D005306 2.8e-135 485.7 286 78.3
Glyma.17G231700 Glycine max HOM05D004712 ORTHO05D005306 6.3e-135 484.6 297 76.8
Manes.03G046000 Manihot esculenta HOM05D004712 ORTHO05D005306 8.2e-135 484.2 300 76.0
HanXRQChr17g0538901 Helianthus annuus HOM05D004712 ORTHO05D005306 1.1e-134 483.8 286 79.0
Duzib168G2010 Durio zibethinus HOM05D004712 ORTHO05D005306 1.8e-134 483.0 289 77.9
ECA246G0363 Erigeron canadensis HOM05D004712 ORTHO05D005306 2.4e-134 482.6 287 79.4
Nn6g35381 Nelumbo nucifera HOM05D004712 ORTHO05D005306 4.1e-134 481.9 306 74.5
Potri.018G058900 Populus trichocarpa HOM05D004712 ORTHO05D005306 5.3e-134 481.5 286 78.3
ClCG08G016850 Citrullus lanatus HOM05D004712 ORTHO05D005306 1.5e-133 479.9 292 75.3
Hma1.2p1_1266F.1_g271360 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 1.5e-133 479.9 286 78.0
Sc09g0009600 Simmondsia chinensis HOM05D004712 ORTHO05D005306 1.5e-133 479.9 286 79.7
EL10Ac2g03950 Beta vulgaris HOM05D004712 ORTHO05D005306 2.0e-133 479.6 286 78.0
CiPaw.15G042700 Carya illinoinensis HOM05D004712 ORTHO05D005306 2.0e-133 479.6 298 75.8
Thecc.09G050100 Theobroma cacao HOM05D004712 ORTHO05D005306 2.6e-133 479.2 286 78.3
CsaV3_2G025770 Cucumis sativus L. HOM05D004712 ORTHO05D005306 5.9e-133 478.0 292 74.7
QL05p017273 Quercus lobata HOM05D004712 ORTHO05D005306 1.3e-132 476.9 299 73.2
MELO3C010771.2 Cucumis melo HOM05D004712 ORTHO05D005306 1.7e-132 476.5 297 73.7
MD08G1074400 Malus domestica HOM05D004712 ORTHO05D005306 1.7e-132 476.5 299 75.6
Potri.006G234000 Populus trichocarpa HOM05D004712 ORTHO05D005306 1.7e-132 476.5 285 77.9
GSVIVG01016906001 Vitis vinifera HOM05D004712 ORTHO05D005306 1.7e-132 476.5 299 75.3
Glyma.14G091700 Glycine max HOM05D004712 ORTHO05D005306 2.2e-132 476.1 297 75.4
AUR62009206 Chenopodium quinoa HOM05D004712 ORTHO05D005306 3.8e-132 475.3 286 76.2
CANSAT25G2372 Cannabis sativa HOM05D004712 ORTHO05D005306 5.0e-132 474.9 286 76.9
PSO210G7282 Papaver somniferum HOM05D004712 ORTHO05D005306 5.0e-132 474.9 296 74.0
RcHm_v2.0_Chr6g0310381 Rosa chinensis HOM05D004712 ORTHO05D005306 8.5e-132 474.2 292 76.7
PSO210G0832 Papaver somniferum HOM05D004712 ORTHO05D005306 1.1e-131 473.8 296 73.6
Psat6g019200 Pisum sativum HOM05D004712 ORTHO05D005306 1.9e-131 473.0 286 76.6
Ca_13194_v3 Cicer arietinum L. HOM05D004712 ORTHO05D005306 2.5e-131 472.6 296 75.0
THA.LOC104803739 Tarenaya hassleriana HOM05D004712 ORTHO05D005306 2.5e-131 472.6 299 73.6
CSS0042817 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 7.2e-131 471.1 300 75.0
Lsat_1_v5_gn_3_27140 Lactuca sativa HOM05D004712 ORTHO05D005306 7.2e-131 471.1 301 74.1
Sabra06G0182200 Salix brachista HOM05D004712 ORTHO05D005306 7.2e-131 471.1 285 77.2
QL05p017569 Quercus lobata HOM05D004712 ORTHO05D005306 1.2e-130 470.3 299 72.2
AT2G25910 Arabidopsis thaliana HOM05D004712 ORTHO05D005306 1.6e-130 469.9 300 72.0
Sp4g05810 Schrenkiella parvula HOM05D004712 ORTHO05D005306 1.6e-130 469.9 294 73.5
Lj5g0015176 Lotus japonicus HOM05D004712 ORTHO05D005306 2.1e-130 469.5 291 77.7
FAN27G0349 Fragaria x ananassa HOM05D004712 ORTHO05D005306 4.6e-130 468.4 292 75.7
VMungo0647G0552 Vigna mungo HOM05D004712 ORTHO05D005306 4.6e-130 468.4 288 76.7
TWI63G0904 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 6.1e-130 468.0 293 75.1
CARHR115280 Cardamine hirsuta HOM05D004712 ORTHO05D005306 1.0e-129 467.2 300 72.0
FvH4_2g32310 Fragaria vesca HOM05D004712 ORTHO05D005306 1.0e-129 467.2 292 75.7
FAN20G0488 Fragaria x ananassa HOM05D004712 ORTHO05D005306 1.0e-129 467.2 292 75.7
BcaB06g29616 Brassica carinata HOM05D004712 ORTHO05D005306 1.8e-129 466.5 300 71.3
A04p20130 Brassica napus HOM05D004712 ORTHO05D005306 1.8e-129 466.5 300 71.3
BraA04t17594Z Brassica rapa HOM05D004712 ORTHO05D005306 1.8e-129 466.5 300 71.3
Sabra18G0050600 Salix brachista HOM05D004712 ORTHO05D005306 1.8e-129 466.5 333 67.6
AL4G17960 Arabidopsis lyrata HOM05D004712 ORTHO05D005306 2.3e-129 466.1 301 72.1
C04p55830 Brassica napus HOM05D004712 ORTHO05D005306 2.3e-129 466.1 300 71.3
Thhalv10002033m.g Eutrema salsugineum HOM05D004712 ORTHO05D005306 2.3e-129 466.1 300 71.7
Phvul.001G032800 Phaseolus vulgaris HOM05D004712 ORTHO05D005306 2.3e-129 466.1 286 75.9
Aa31LG5G9770 Aethionema arabicum HOM05D004712 ORTHO05D005306 5.1e-129 464.9 312 70.5
TWI34G1658 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 5.1e-129 464.9 317 71.6
Lj7A695G32 Lonicera japonica HOM05D004712 ORTHO05D005306 6.7e-129 464.5 303 72.6
FAN15G0413 Fragaria x ananassa HOM05D004712 ORTHO05D005306 1.1e-128 463.8 292 75.7
DCAR_004451 Daucus carota HOM05D004712 ORTHO05D005306 1.5e-128 463.4 290 77.9
TPR.G13042 Trifolium pratense HOM05D004712 ORTHO05D005306 1.5e-128 463.4 286 74.5
BcaC02g08320 Brassica carinata HOM05D004712 ORTHO05D005306 2.0e-128 463.0 300 71.0
BolC4t27113H Brassica oleracea HOM05D004712 ORTHO05D005306 2.0e-128 463.0 300 71.0
CSS0005003 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 3.3e-128 462.2 299 72.9
Gorai.009G047400 Gossypium raimondii HOM05D004712 ORTHO05D005306 4.4e-128 461.8 271 78.6
Medtr1g016970 Medicago truncatula HOM05D004712 ORTHO05D005306 4.4e-128 461.8 297 72.7
FAN24G2925 Fragaria x ananassa HOM05D004712 ORTHO05D005306 5.7e-128 461.5 292 75.3
Actinidia21731 Actinidia chinensis HOM05D004712 ORTHO05D005306 1.7e-127 459.9 299 71.2
PGR031G0938 Punica granatum HOM05D004712 ORTHO05D005306 3.7e-127 458.8 300 72.0
vmacro05273 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 1.4e-126 456.8 337 66.5
ATR0789G022 Amborella trichopoda HOM05D004712 ORTHO05D005306 1.8e-126 456.4 297 70.7
SEGI_23712 Sequoiadendron giganteum HOM05D004712 ORTHO05D005306 2.0e-125 453.0 292 70.9
Haze_18228 Corylus avellana HOM05D004712 ORTHO05D005306 1.7e-124 449.9 299 72.9
AUR62040203 Chenopodium quinoa HOM05D004712 ORTHO05D005306 8.5e-124 447.6 286 73.4
Os01g0566900 Oryza sativa ssp. japonica HOM05D004712 ORTHO05D005306 8.5e-124 447.6 286 72.4
arahy.Tifrunner.gnm1.ann1.QZ1T53 Arachis hypogaea HOM05D004712 ORTHO05D005306 3.2e-123 445.7 300 70.0
arahy.Tifrunner.gnm1.ann1.289CQF Arachis hypogaea HOM05D004712 ORTHO05D005306 3.6e-122 442.2 300 69.7
Zm00001eb159970 Zea mays HOM05D004712 ORTHO05D005306 1.4e-121 440.3 289 72.3
Cfa017921 Carpinus fangiana HOM05D004712 ORTHO05D005306 8.8e-121 437.6 303 71.6
AUR62040198 Chenopodium quinoa HOM05D004712 ORTHO05D005306 2.0e-120 436.4 287 71.8
Nitab4.5_0010821g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 5.7e-120 434.9 299 68.6
Ah.10g034640 Amaranthus hybridus HOM05D004712 ORTHO05D005306 1.3e-119 433.7 324 64.2
Rhsim08G0230100 Rhododendron simsii HOM05D004712 ORTHO05D005306 1.3e-119 433.7 344 61.3
Zm00001eb356940 Zea mays HOM05D004712 ORTHO05D005306 3.7e-119 432.2 287 71.8
Rhsim12G0204300 Rhododendron simsii HOM05D004712 ORTHO05D005306 8.2e-119 431.0 299 67.6
Peaxi162Scf00038g01243 Petunia axillaris HOM05D004712 ORTHO05D005306 2.6e-117 426.0 299 67.9
PGSC0003DMG401002514 Solanum tuberosum HOM05D004712 ORTHO05D005306 5.9e-117 424.9 299 66.2
Nitab4.5_0005661g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 1.0e-116 424.1 299 67.9
Gohir.D03G057300 Gossypium hirsutum HOM05D004712 ORTHO05D005306 2.9e-116 422.5 301 65.1
MBI04_g12189_MAGBIO Magnolia biondii HOM05D004712 ORTHO05D005306 1.6e-114 416.8 281 71.2
Lj5A50G64 Lonicera japonica HOM05D004712 ORTHO05D005306 3.6e-114 415.6 295 65.4
Gohir.A02G116301 Gossypium hirsutum HOM05D004712 ORTHO05D005306 8.0e-114 414.5 286 66.4
HPP92_009150 Vanilla planifolia HOM05D004712 ORTHO05D005306 1.4e-113 413.7 300 62.7
AagrBONN_evm.TU.Sc2ySwM_228.3302 Anthoceros agrestis HOM05D004712 ORTHO05D005306 9.7e-112 407.5 294 64.3
Sed0015351 Sechium edule HOM05D004712 ORTHO05D005306 1.7e-111 406.8 288 67.4
Eucgr.C00628 Eucalyptus grandis HOM05D004712 ORTHO05D005306 5.3e-110 401.7 243 77.8
AUR62031977 Chenopodium quinoa HOM05D004712 ORTHO05D005306 2.7e-109 399.4 286 63.3
SMO174G0103 Selaginella moellendorffii HOM05D004712 ORTHO05D005306 6.5e-108 394.8 313 60.7
Mapoly0072s0029 Marchantia polymorpha HOM05D004712 ORTHO05D005306 1.5e-107 393.7 293 62.1
Sopen01g026340 Solanum pennellii HOM05D000014 ORTHO05D005306 3.2e-107 392.5 304 61.8
Solyc03g121250.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 1.0e-105 387.5 262 69.8
Dinv30410 Davidia involucrata HOM05D004712 ORTHO05D005306 6.8e-105 384.8 242 76.0
Pp3c15_8210 Physcomitrium patens HOM05D004712 ORTHO05D005306 1.5e-104 383.6 298 61.1
MD15G1062100 Malus domestica HOM05D004712 ORTHO05D005306 1.7e-103 380.2 299 63.2
vmacro17006 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 7.0e-102 374.8 377 51.2
Manes.16G077100 Manihot esculenta HOM05D004712 ORTHO05D005306 2.0e-101 373.2 222 80.2
Sopen03g040060 Solanum pennellii HOM05D004712 ORTHO05D005306 1.4e-94 350.5 266 65.0
COL.COLO4_30565 Corchorus olitorius HOM05D004712 ORTHO05D005306 1.2e-88 330.9 240 62.9
AUR62022272 Chenopodium quinoa HOM05D004712 ORTHO05D005306 6.4e-87 325.1 226 63.7
CAN.G1143.35 Capsicum annuum HOM05D004712 ORTHO05D005306 4.6e-85 318.9 228 64.9
Glyma.04G087900 Glycine max HOM05D004712 ORTHO05D005306 1.3e-84 317.4 286 58.0
unitig_748.g8268 Utricularia gibba HOM05D004712 ORTHO05D005306 2.3e-84 316.6 317 50.5
Carub.0004s0573 Capsella rubella HOM05D004712 ORTHO05D005306 5.6e-83 312.0 200 72.5
Pp3c9_13080 Physcomitrium patens HOM05D004712 ORTHO05D005306 2.1e-82 310.1 227 63.4
unitig_32.g10885 Utricularia gibba HOM05D004712 ORTHO05D005306 1.6e-74 283.9 225 60.9
Solyc01g060200.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 6.0e-69 265.4 238 54.6
Cpa.g.sc1834.1 Carica papaya HOM05D004712 ORTHO05D005306 2.0e-64 250.4 156 74.4
CDE06G1081 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 4.6e-61 239.2 146 76.0
Cpa.g.c30793.3 Carica papaya HOM05D004712 ORTHO05D005306 3.4e-56 223.0 141 73.0
Gorai.003G060400 Gossypium raimondii HOM05D004712 ORTHO05D005306 1.9e-51 207.2 168 60.7
SGA_v2.0_scaffold88G27214 Striga asiatica HOM05D004712 ORTHO05D005306 4.8e-50 202.6 118 76.3
CDE06G1637 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 6.0e-45 185.7 115 74.8
Glyma.20G062400 Glycine max HOM05D004712 ORTHO05D005306 1.1e-35 154.8 104 70.2
ATR0626G141 Amborella trichopoda HOM05D004712 ORTHO05D005306 3.8e-31 139.8 168 49.4
Cpa.g.sc131.9 Carica papaya HOM05D004712 ORTHO05D005306 2.2e-26 124.0 75 65.3
Cpa.g.sc131.11 Carica papaya HOM05D004712 ORTHO05D005306 2.1e-21 107.5 59 81.4
Hma1.2p1_0051F.1_g029750 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 9.7e-19 98.6 59 74.6
Cc04_g02330 Coffea canephora HOM05D004712 ORTHO05D005306 3.1e-17 93.6 136 40.4
MSTRG.22613 Avicennia marina HOM05D004712 ORTHO05D005306 1.4e-14 84.7 66 60.6
TAR636G2080 Trochodendron aralioides HOM05D000850 ORTHO05D000266 1.4e-14 84.7 59 64.4
Cpa.g.sc131.8 Carica papaya HOM05D004712 ORTHO05D005306 3.9e-12 76.6 57 66.7
Nn4g24691 Nelumbo nucifera HOM05D004712 ORTHO05D005306 1.8e-09 67.8 41 68.3
Cre03.g152425 Chlamydomonas reinhardtii HOM05D004712 ORTHO05D005306 2.4e-09 67.4 202 27.7
EL10Ac9g21163 Beta vulgaris HOM05D004712 ORTHO05D005306 2.2e-07 60.8 78 46.2
COL.COLO4_30564 Corchorus olitorius HOM05D004712 ORTHO05D005306 2.2e-07 60.8 35 82.9
MCO15G238 Micromonas commoda HOM05D015906 ORTHO05D005306 5.0e-07 59.7 89 34.8
Cre03.g152400 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D028597 6.5e-07 59.3 193 26.4
FAN23G2178 Fragaria x ananassa HOM05D002024 ORTHO05D004352 5.5e-06 56.2 154 27.3


User provided reference genes

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