Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G195.8 Capsicum annuum HOM05D002037 ORTHO05D005261 0.0e+00 3563.9 1919 100.0
Sopen08g023030 Solanum pennellii HOM05D002037 ORTHO05D005261 0.0e+00 3261.1 1899 92.3
Solyc08g074370.4 Solanum lycopersicum HOM05D002037 ORTHO05D005261 0.0e+00 3249.9 1893 92.2
Peaxi162Scf00213g01313 Petunia axillaris HOM05D002037 ORTHO05D005261 0.0e+00 2879.0 1782 84.9
Lj7A751T36 Lonicera japonica HOM05D002037 ORTHO05D005261 0.0e+00 2481.4 1946 71.1
CSS0033264 Camellia sinensis var. sinensis HOM05D002037 ORTHO05D005261 0.0e+00 2437.9 1844 71.3
TAR628G0359 Trochodendron aralioides HOM05D002037 ORTHO05D005261 0.0e+00 2387.8 1948 68.1
MSTRG.25765 Avicennia marina HOM05D002037 ORTHO05D005261 0.0e+00 2374.4 1946 69.8
Thecc.09G001100 Theobroma cacao HOM05D002037 ORTHO05D005261 0.0e+00 2365.9 1935 68.0
Cc00_g09840 Coffea canephora HOM05D002037 ORTHO05D005261 0.0e+00 2361.3 1934 68.9
Hund19377 Selenicereus undatus HOM05D002037 ORTHO05D005261 0.0e+00 2329.3 1943 66.5
Actinidia03327 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2312.0 1909 68.3
CiPaw.08G017100 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 2311.6 1944 67.1
CiPaw.07G216200 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 2305.0 1942 66.3
Gorai.004G293400 Gossypium raimondii HOM05D002037 ORTHO05D005261 0.0e+00 2298.9 1939 67.3
Gohir.A08G253200 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 2291.2 1872 68.4
arahy.Tifrunner.gnm1.ann1.8Q3S3N Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 2290.0 1927 66.7
arahy.Tifrunner.gnm1.ann1.WQ4U6A Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 2288.8 1927 66.8
Phvul.009G099700 Phaseolus vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 2284.6 1929 66.9
Ciclev10007230m.g Citrus clementina HOM05D002037 ORTHO05D005261 0.0e+00 2284.2 1928 67.1
Gohir.D08G274900 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 2278.4 1933 67.2
SalBow4G1905 Salvia bowleyana HOM05D002037 ORTHO05D005261 0.0e+00 2278.1 1808 68.6
Glyma.04G073900 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 2272.7 1938 66.9
QL12p030895 Quercus lobata HOM05D002037 ORTHO05D005261 0.0e+00 2271.1 1949 65.9
VMungo1309G2917 Vigna mungo HOM05D002037 ORTHO05D005261 0.0e+00 2271.1 1822 67.5
TWI32G0793 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 2265.0 1933 66.3
TWI63G1280 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 2260.7 1836 66.9
HanXRQChr03g0082961 Helianthus annuus HOM05D002037 ORTHO05D005261 0.0e+00 2259.6 1896 66.9
COL.COLO4_18641 Corchorus olitorius HOM05D002037 ORTHO05D005261 0.0e+00 2259.2 1809 67.8
Glyma.06G075000 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 2258.4 1930 65.6
Haze_21662 Corylus avellana HOM05D002037 ORTHO05D005261 0.0e+00 2255.7 1945 66.4
Prupe.1G463700 Prunus persica HOM05D002037 ORTHO05D005261 0.0e+00 2254.9 1938 66.2
CsaV3_3G046860 Cucumis sativus L. HOM05D002037 ORTHO05D005261 0.0e+00 2250.7 1937 65.4
Migut.A00462 Erythranthe guttata HOM05D002037 ORTHO05D005261 0.0e+00 2250.3 1930 66.3
Manes.16G138600 Manihot esculenta HOM05D002037 ORTHO05D005261 0.0e+00 2239.5 1930 65.9
MELO3C003650.2 Cucumis melo HOM05D002037 ORTHO05D005261 0.0e+00 2236.5 1968 64.6
vmacro05091 Vaccinium macrocarpon HOM05D002037 ORTHO05D005261 0.0e+00 2229.5 1920 66.5
SGA_v2.0_scaffold193G40648 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 2226.4 1931 66.6
AUR62028065 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 2224.9 1934 65.4
Potri.006G280200 Populus trichocarpa HOM05D002037 ORTHO05D005261 0.0e+00 2221.0 1936 65.5
ClCG05G017350 Citrullus lanatus HOM05D002037 ORTHO05D005261 0.0e+00 2218.7 2035 62.4
Aqoxy6G00128 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 0.0e+00 2218.4 1948 64.7
Duzib187G1591 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 2215.3 1945 65.1
Sc09g0007440 Simmondsia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2213.0 1936 64.0
EL10Ac2g03672 Beta vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 2211.4 1936 64.6
RcHm_v2.0_Chr6g0312521 Rosa chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2205.6 1944 65.4
Cfa013233 Carpinus fangiana HOM05D002037 ORTHO05D005261 0.0e+00 2204.1 1890 66.6
AUR62020667 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 2201.4 1933 64.9
SGA_v2.0_scaffold27G11691 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 2200.2 1846 65.0
MD08G1132100 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 2199.1 1869 65.9
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 0.0e+00 2197.5 1901 65.5
MD15G1113300 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 2192.9 1937 65.2
CANSAT25G0165 Cannabis sativa HOM05D002037 ORTHO05D005261 0.0e+00 2186.8 1939 65.2
Lalb_Chr11g0064041 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 2185.6 1930 65.0
Sed0009824 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 2184.8 1933 64.3
ECA240G1370 Erigeron canadensis HOM05D002037 ORTHO05D005261 0.0e+00 2182.5 1935 65.8
FAN27G2203 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2176.7 1941 64.7
FvH4_2g30560 Fragaria vesca HOM05D002037 ORTHO05D005261 0.0e+00 2171.7 1941 64.9
DCAR_002179 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 2167.1 1946 63.1
FAN24G1054 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2163.7 1940 64.6
Medtr3g108470 Medicago truncatula HOM05D002037 ORTHO05D005261 0.0e+00 2155.6 1938 64.4
Psat5g026040 Pisum sativum HOM05D002037 ORTHO05D005261 0.0e+00 2151.3 1892 63.7
Eucgr.C03980 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 2141.3 1930 64.5
PGR044G2064 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 2141.3 1935 63.8
Lalb_Chr08g0243691 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 2137.1 1931 63.7
Sed0015816 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 2131.3 1946 63.1
TPR.G12447 Trifolium pratense HOM05D002037 ORTHO05D005261 0.0e+00 2129.0 1828 64.8
GSVIVG01035587001 Vitis vinifera HOM05D002037 ORTHO05D005261 0.0e+00 2124.7 1939 63.3
Lj5g0025434 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 2108.6 1941 62.3
Atru.chr7.2709 Acer truncatum HOM05D002037 ORTHO05D005261 0.0e+00 2107.0 1794 64.3
Cpa.g.sc148.12 Carica papaya HOM05D002037 ORTHO05D005261 0.0e+00 2103.9 1940 62.7
Duzib168G1462 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 2098.2 1777 67.7
Lj1g0006019 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 2090.8 1918 62.9
DCAR_030972 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 2089.7 1960 62.4
PGR044G2421 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 2080.8 1825 62.5
Lsat_1_v5_gn_5_59360 Lactuca sativa HOM05D002037 ORTHO05D005261 0.0e+00 2080.4 1936 63.3
FAN20G1121 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2039.2 1941 62.2
Ca_15684_v3 Cicer arietinum L. HOM05D002037 ORTHO05D005261 0.0e+00 2037.7 1828 62.6
MBI09_g40924_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 2016.9 1966 60.1
Nn1g08375 Nelumbo nucifera HOM05D002037 ORTHO05D005261 0.0e+00 1986.5 1700 64.5
PSO063G0181 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1986.1 1947 59.4
PSO017G1653 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1983.0 1934 59.7
ATR0584G173 Amborella trichopoda HOM05D002037 ORTHO05D005261 0.0e+00 1934.8 1944 58.0
Rhsim07G0173400 Rhododendron simsii HOM05D002037 ORTHO05D005261 0.0e+00 1931.0 1739 62.5
THA.LOC104803889 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1895.2 1933 58.1
THA.LOC104803581 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1894.0 1877 58.4
CDE02G1944 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1890.9 1873 58.1
CDE08G1677 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1869.7 1946 56.1
Thhalv10024189m.g Eutrema salsugineum HOM05D002037 ORTHO05D005261 0.0e+00 1828.1 1908 55.3
AL7G20910 Arabidopsis lyrata HOM05D002037 ORTHO05D005261 0.0e+00 1799.3 1882 56.0
Aa31LG2G19150 Aethionema arabicum HOM05D002037 ORTHO05D005261 0.0e+00 1795.4 1857 56.5
Carub.0007s0937 Capsella rubella HOM05D002037 ORTHO05D005261 0.0e+00 1769.6 1962 55.2
CARHR239070 Cardamine hirsuta HOM05D002037 ORTHO05D005261 0.0e+00 1761.5 1883 55.0
BraA03t15097Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1761.1 1986 54.3
A03p60560 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1758.8 1986 54.2
BcaB03g12684 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1755.3 1879 54.4
HPP92_025041 Vanilla planifolia HOM05D002037 ORTHO05D005261 0.0e+00 1754.6 1903 55.3
BcaC01g01107 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1751.5 1879 54.7
C07p58470 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1746.1 1986 54.1
BolC7t46302H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1744.2 1986 54.2
C03p88150 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1743.0 1891 54.2
AT4G31160 Arabidopsis thaliana HOM05D002037 ORTHO05D005261 0.0e+00 1742.2 1998 54.8
BolC3t21123H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1741.5 1979 54.7
Nitab4.5_0009273g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 0.0e+00 1740.7 1074 89.0
A08p18770 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1738.8 1891 54.2
BraA08t33838Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1738.8 1891 54.2
Zm00001eb434410 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1666.7 1943 52.3
Dinv37481 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1653.3 1236 73.6
Zm00001eb076460 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1622.1 1834 51.9
Actinidia25728 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1572.0 1942 51.6
Eucgr.C00279 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1544.3 1245 67.6
Hma1.2p1_0214F.1_g090640 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1543.9 1244 69.5
unitig_26.g8827 Utricularia gibba HOM05D002037 ORTHO05D005261 0.0e+00 1508.0 1961 50.5
MBI09_g01931_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1505.0 1484 59.0
Mapoly0062s0116 Marchantia polymorpha HOM05D002037 ORTHO05D005261 0.0e+00 1475.3 2056 48.1
Pp3c1_12700 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1464.5 2011 48.1
Pp3c1_12703 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1464.5 2011 48.1
Pp3c2_24840 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1448.0 1904 47.7
BcaNung01540 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1401.3 1470 57.7
Nitab4.5_0003528g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 0.0e+00 1367.1 833 89.9
Sp7g29040 Schrenkiella parvula HOM05D002037 ORTHO05D005261 0.0e+00 1240.7 1506 52.5
Dinv09451 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1234.2 914 71.7
AagrBONN_evm.TU.Sc2ySwM_117.676 Anthoceros agrestis HOM05D002037 ORTHO05D005261 0.0e+00 1231.9 1798 44.9
Hma1.2p1_0319F.1_g123860 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1202.2 1046 66.3
Lj1g0010809 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1155.2 1347 53.5
Oeu057143.1 Olea europaea HOM05D002037 ORTHO05D005261 0.0e+00 1103.6 1451 49.8
Dinv09452 Davidia involucrata HOM05D002037 ORTHO05D005261 3.0e-306 1056.2 871 68.0
CBR_g37392 Chara braunii HOM05D002037 ORTHO05D000002 2.7e-283 979.9 1629 41.3
Migut.E01409 Erythranthe guttata HOM05D002037 ORTHO05D005261 3.1e-263 913.3 1835 36.5
PSO170G5891 Papaver somniferum HOM05D002037 ORTHO05D005261 5.5e-252 875.9 880 57.2
SEGI_24212 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 7.2e-252 875.5 795 61.6
Hma1.2p1_0214F.1_g090650 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.8e-210 738.0 598 69.7
Os04g0691200 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005261 3.4e-185 654.1 647 55.5
SEGI_28363 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 2.2e-184 651.4 656 56.2
Glyma.14G131100 Glycine max HOM05D002037 ORTHO05D005261 6.3e-179 633.3 720 51.5
Dinv37482 Davidia involucrata HOM05D002037 ORTHO05D005261 2.6e-177 627.9 497 66.8
Hma1.2p1_2010F.1_g311000 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 3.2e-167 594.3 439 75.9
SHI50541 Sapria himalayana HOM05D002037 ORTHO05D005261 1.0e-160 572.8 618 53.4
Hma1.2p1_1382F.1_g279390 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 2.5e-151 541.6 535 61.5
Hma1.2p1_2176F.1_g316130 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 9.7e-148 529.6 525 61.3
Aqoxy4G02471 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 8.1e-110 403.7 1249 28.1
FAN20G0200 Fragaria x ananassa HOM05D002037 ORTHO05D005261 2.0e-108 399.1 457 51.9
SHI21131 Sapria himalayana HOM05D002037 ORTHO05D005261 8.3e-107 393.7 355 60.6
Cre17.g725450 Chlamydomonas reinhardtii HOM05D002037 ORTHO05D005261 2.2e-83 315.8 2083 23.3
Migut.E01404 Erythranthe guttata HOM05D002037 ORTHO05D005261 6.0e-81 307.8 659 35.1
SEGI_07751 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 1.3e-80 306.6 418 43.5
Hund03252 Selenicereus undatus HOM05D002037 ORTHO05D005261 3.3e-79 302.0 880 31.8
Migut.E01403 Erythranthe guttata HOM05D002037 ORTHO05D005261 5.3e-77 294.7 465 40.6
BcaNung01541 Brassica carinata HOM05D002037 ORTHO05D005261 4.5e-76 291.6 442 43.2
Hma1.2p1_1382F.1_g279380 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.9e-74 286.2 235 68.5
Hma1.2p1_2176F.1_g316120 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 1.3e-67 263.5 209 69.9
Lj1g0019909 Lotus japonicus HOM05D002037 ORTHO05D005261 4.1e-61 241.9 261 65.5
TPR.G39361 Trifolium pratense HOM05D002037 ORTHO05D005261 2.0e-52 213.0 265 47.5
TPR.G7111 Trifolium pratense HOM05D002037 ORTHO05D005261 9.7e-47 194.1 231 54.5
Gohir.D08G274833 Gossypium hirsutum HOM05D002037 ORTHO05D005261 3.7e-38 165.6 181 70.2
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 1.2e-28 134.0 193 47.7
Nitab4.5_0000919g0010 Nicotiana tabacum HOM05D002037 ORTHO05D021575 1.5e-23 117.1 76 78.9
Nitab4.5_0026868g0020 Nicotiana tabacum HOM05D002037 ORTHO05D005261 1.7e-19 103.6 52 92.3
Dinv03356 Davidia involucrata HOM05D002037 ORTHO05D005261 1.4e-16 94.0 165 38.8
arahy.Tifrunner.gnm1.ann1.ME62WN Arachis hypogaea HOM05D002037 ORTHO05D005261 4.9e-14 85.5 90 52.2
Hund03253 Selenicereus undatus HOM05D002037 ORTHO05D005261 4.1e-13 82.4 52 73.1
Atru.chr7.2708 Acer truncatum HOM05D002037 ORTHO05D005261 1.2e-12 80.9 127 70.9
Dinv42062 Davidia involucrata HOM05D000142 ORTHO05D000124 1.2e-12 80.9 153 38.6
MD08G1134600 Malus domestica HOM05D002037 ORTHO05D005261 1.0e-11 77.8 58 60.3
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 6.1e-09 68.6 33 84.8
PGSC0003DMG401029595 Solanum tuberosum HOM05D002037 ORTHO05D021575 8.0e-09 68.2 37 83.8
Nitab4.5_0026868g0010 Nicotiana tabacum HOM05D002037 ORTHO05D021575 6.8e-08 65.1 34 88.2


User provided reference genes

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