Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1844.1 Capsicum annuum HOM05D000104 ORTHO05D004783 1.9e-31 138.7 77 100.0
Solyc02g062780.4 Solanum lycopersicum HOM05D000104 ORTHO05D006241 6.3e-14 80.5 75 69.3
Sopen02g013810 Solanum pennellii HOM05D000104 ORTHO05D006241 6.3e-14 80.5 75 69.3
PGSC0003DMG400015477 Solanum tuberosum HOM05D000104 ORTHO05D006241 6.3e-14 80.5 75 69.3
CAN.G53.25 Capsicum annuum HOM05D000104 ORTHO05D006241 1.4e-13 79.3 68 70.6
Nitab4.5_0000434g0120 Nicotiana tabacum HOM05D000104 ORTHO05D006241 9.1e-13 76.6 87 62.1
Nitab4.5_0004711g0010 Nicotiana tabacum HOM05D000104 ORTHO05D006241 1.2e-12 76.3 75 66.7
Solyc02g085390.4 Solanum lycopersicum HOM05D000104 ORTHO05D006241 1.2e-12 76.3 85 63.5
Nitab4.5_0003233g0020 Nicotiana tabacum HOM05D000104 ORTHO05D006241 1.5e-12 75.9 75 66.7
PGSC0003DMG400014895 Solanum tuberosum HOM05D000104 ORTHO05D006241 1.5e-12 75.9 86 62.8
unitig_37.g12365 Utricularia gibba HOM05D000104 ORTHO05D006241 2.0e-12 75.5 67 65.7
Nitab4.5_0000136g0450 Nicotiana tabacum HOM05D000104 ORTHO05D006241 2.6e-12 75.1 75 65.3
Peaxi162Scf00515g00516 Petunia axillaris HOM05D000104 ORTHO05D006241 2.6e-12 75.1 86 62.8
Peaxi162Scf00008g03717 Petunia axillaris HOM05D000104 ORTHO05D006241 3.4e-12 74.7 64 73.4
Sopen02g030080 Solanum pennellii HOM05D000104 ORTHO05D006241 3.4e-12 74.7 85 62.4
CAN.G358.104 Capsicum annuum HOM05D000104 ORTHO05D006241 4.5e-12 74.3 75 65.3
Cc07_g09410 Coffea canephora HOM05D000104 ORTHO05D006241 4.5e-12 74.3 86 61.6
Oeu044136.1 Olea europaea HOM05D000104 ORTHO05D006241 4.5e-12 74.3 75 62.7
Migut.L00514 Erythranthe guttata HOM05D000104 ORTHO05D006241 7.7e-12 73.6 75 62.7
Potri.019G129900 Populus trichocarpa HOM05D000104 ORTHO05D006241 1.3e-11 72.8 86 58.1
Aqoxy2G01756 Aquilegia oxysepala HOM05D004245 ORTHO05D004783 2.2e-11 72.0 77 58.4
Aqoxy5G01651 Aquilegia oxysepala HOM05D000104 ORTHO05D006241 2.2e-11 72.0 77 58.4
Dinv39973 Davidia involucrata HOM05D000682 ORTHO05D006241 2.2e-11 72.0 86 60.5
FAN28G2553 Fragaria x ananassa HOM05D000104 ORTHO05D006241 3.8e-11 71.2 85 60.0
arahy.Tifrunner.gnm1.ann1.5H7P5J Arachis hypogaea HOM05D000104 ORTHO05D006241 5.0e-11 70.9 86 58.1
arahy.Tifrunner.gnm1.ann1.C2GR1Y Arachis hypogaea HOM05D000104 ORTHO05D006241 5.0e-11 70.9 86 58.1
Rhsim01G0038800 Rhododendron simsii HOM05D000104 ORTHO05D006241 5.0e-11 70.9 86 59.3
RcHm_v2.0_Chr2g0101811 Rosa chinensis HOM05D000104 ORTHO05D006241 5.0e-11 70.9 84 60.7
HPP92_024928 Vanilla planifolia HOM05D000104 ORTHO05D006241 5.0e-11 70.9 76 56.6
HPP92_024942 Vanilla planifolia HOM05D000104 ORTHO05D006241 5.0e-11 70.9 76 56.6
Hma1.2p1_0717F.1_g208150 Hydrangea macrophylla HOM05D000104 ORTHO05D006241 6.5e-11 70.5 85 60.0
Nn1g05024 Nelumbo nucifera HOM05D000104 ORTHO05D006241 6.5e-11 70.5 86 58.1
Zm00001eb117870 Zea mays HOM05D000104 ORTHO05D006241 6.5e-11 70.5 76 60.5
AUR62003161 Chenopodium quinoa HOM05D000104 ORTHO05D006241 8.5e-11 70.1 85 57.6
FvH4_1g13430 Fragaria vesca HOM05D000104 ORTHO05D006241 8.5e-11 70.1 85 60.0
FAN19G2747 Fragaria x ananassa HOM05D000104 ORTHO05D006241 8.5e-11 70.1 85 60.0
FAN23G2807 Fragaria x ananassa HOM05D000104 ORTHO05D006241 8.5e-11 70.1 85 60.0
MSTRG.15275 Avicennia marina HOM05D000104 ORTHO05D006241 1.1e-10 69.7 75 60.0
CDE06G0270 Ceratophyllum demersum HOM05D000104 ORTHO05D006241 1.1e-10 69.7 86 57.0
AUR62007981 Chenopodium quinoa HOM05D000104 ORTHO05D006241 1.1e-10 69.7 75 60.0
Hma1.2p1_0400F.1_g144480 Hydrangea macrophylla HOM05D000104 ORTHO05D006241 1.1e-10 69.7 86 58.1
MD02G1149400 Malus domestica HOM05D000104 ORTHO05D006241 1.1e-10 69.7 86 57.0
Os03g0722400 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D006241 1.1e-10 69.7 77 58.4
Potri.007G026700 Populus trichocarpa HOM05D000104 ORTHO05D006241 1.1e-10 69.7 86 57.0
COL.COLO4_22093 Corchorus olitorius HOM05D000104 ORTHO05D006241 1.4e-10 69.3 73 63.0
Medtr5g020000 Medicago truncatula HOM05D000104 ORTHO05D006241 1.4e-10 69.3 86 58.1
Os09g0442700 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D006241 1.4e-10 69.3 76 59.2
Psat2g160360 Pisum sativum HOM05D000104 ORTHO05D006241 1.4e-10 69.3 86 57.0
GSVIVG01018979001 Vitis vinifera HOM05D000104 ORTHO05D006241 1.4e-10 69.3 84 59.5
Lj2A452T23 Lonicera japonica HOM05D000104 ORTHO05D006241 1.9e-10 68.9 75 60.0
MD15G1264100 Malus domestica HOM05D000104 ORTHO05D006241 1.9e-10 68.9 86 57.0
Manes.01G134600 Manihot esculenta HOM05D000104 ORTHO05D006241 1.9e-10 68.9 86 57.0
vmacro17844 Vaccinium macrocarpon HOM05D000104 ORTHO05D006241 1.9e-10 68.9 75 60.0
Duzib147G0357 Durio zibethinus HOM05D000104 ORTHO05D006241 2.5e-10 68.6 77 58.4
vmacro01888 Vaccinium macrocarpon HOM05D000104 ORTHO05D006241 2.5e-10 68.6 86 57.0
vmacro01889 Vaccinium macrocarpon HOM05D000104 ORTHO05D006241 2.5e-10 68.6 86 57.0
Zm00001eb055640 Zea mays HOM05D000104 ORTHO05D006241 2.5e-10 68.6 76 57.9
Ca_24840_v3 Cicer arietinum L. HOM05D000104 ORTHO05D006241 3.2e-10 68.2 86 57.0
THA.LOC104826939 Tarenaya hassleriana HOM05D000104 ORTHO05D006241 3.2e-10 68.2 75 60.0
FAN26G2391 Fragaria x ananassa HOM05D000104 ORTHO05D006241 4.2e-10 67.8 85 58.8
PSO210G5504 Papaver somniferum HOM05D000104 ORTHO05D006241 4.2e-10 67.8 56 67.9
PSO731G0017 Papaver somniferum HOM05D000104 ORTHO05D006241 4.2e-10 67.8 56 67.9
Sabra07G0023400 Salix brachista HOM05D000104 ORTHO05D006241 4.2e-10 67.8 86 55.8
Actinidia19178 Actinidia chinensis HOM05D000104 ORTHO05D006241 5.5e-10 67.4 86 55.8
ClCG07G009110 Citrullus lanatus HOM05D000104 ORTHO05D006241 5.5e-10 67.4 75 61.3
MELO3C017558.2 Cucumis melo HOM05D000104 ORTHO05D006241 5.5e-10 67.4 86 58.1
MBI16_g31217_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D006241 5.5e-10 67.4 77 61.0
QL06p045767 Quercus lobata HOM05D000104 ORTHO05D006241 5.5e-10 67.4 85 58.8
Prupe.7G153400 Prunus persica HOM05D000104 ORTHO05D006241 7.2e-10 67.0 86 57.0
Thecc.01G037200 Theobroma cacao HOM05D000104 ORTHO05D006241 7.2e-10 67.0 75 60.0
TAR381G0133 Trochodendron aralioides HOM05D000104 ORTHO05D006241 7.2e-10 67.0 77 58.4
Atru.chr3.558 Acer truncatum HOM05D000682 ORTHO05D006241 9.4e-10 66.6 76 55.3
BcaC06g34741 Brassica carinata HOM05D000104 ORTHO05D006241 9.4e-10 66.6 77 58.4
C07p25040 Brassica napus HOM05D000104 ORTHO05D006241 9.4e-10 66.6 77 58.4
BolC7t43036H Brassica oleracea HOM05D000104 ORTHO05D006241 9.4e-10 66.6 77 58.4
Cfa004299 Carpinus fangiana HOM05D000104 ORTHO05D006241 9.4e-10 66.6 86 54.7
Ciclev10024956m.g Citrus clementina HOM05D000104 ORTHO05D006241 9.4e-10 66.6 86 57.0
Haze_15102 Corylus avellana HOM05D000104 ORTHO05D006241 9.4e-10 66.6 86 54.7
Lj2g0008105 Lotus japonicus HOM05D000104 ORTHO05D006241 9.4e-10 66.6 86 57.0
Lalb_Chr09g0322481 Lupinus albus HOM05D000104 ORTHO05D006241 9.4e-10 66.6 86 55.8
Sc03g0000760 Simmondsia chinensis HOM05D000104 ORTHO05D006241 9.4e-10 66.6 75 58.7
Aa31LG1G15310 Aethionema arabicum HOM05D000104 ORTHO05D006241 1.2e-09 66.2 75 61.3
EL10Ac6g14940 Beta vulgaris HOM05D000104 ORTHO05D006241 1.2e-09 66.2 75 58.7
CiPaw.01G036800 Carya illinoinensis HOM05D000104 ORTHO05D006241 1.2e-09 66.2 86 55.8
BcaB02g09994 Brassica carinata HOM05D000104 ORTHO05D006241 1.6e-09 65.9 86 57.0
Glyma.01G175300 Glycine max HOM05D000104 ORTHO05D006241 1.6e-09 65.9 77 57.1
Gohir.A12G065100 Gossypium hirsutum HOM05D000104 ORTHO05D006241 1.6e-09 65.9 77 57.1
Sed0015545 Sechium edule HOM05D000104 ORTHO05D006241 1.6e-09 65.9 86 55.8
Cpa.g.sc55.93 Carica papaya HOM05D000104 ORTHO05D006241 2.1e-09 65.5 86 54.7
Manes.02G092800 Manihot esculenta HOM05D000104 ORTHO05D006241 2.1e-09 65.5 86 54.7
PGR119G0582 Punica granatum HOM05D000104 ORTHO05D006241 2.1e-09 65.5 86 54.7
A07p17180 Brassica napus HOM05D000104 ORTHO05D006241 2.7e-09 65.1 77 57.1
A09p09800 Brassica napus HOM05D000104 ORTHO05D006241 2.7e-09 65.1 77 57.1
BraA07t29446Z Brassica rapa HOM05D000104 ORTHO05D006241 2.7e-09 65.1 77 57.1
BraA09t36627Z Brassica rapa HOM05D000104 ORTHO05D006241 2.7e-09 65.1 77 57.1
Thhalv10003684m.g Eutrema salsugineum HOM05D000104 ORTHO05D006241 2.7e-09 65.1 86 57.0
CANSAT01G0026 Cannabis sativa HOM05D000104 ORTHO05D006241 3.6e-09 64.7 75 57.3
Carub.0008s2774 Capsella rubella HOM05D000104 ORTHO05D006241 3.6e-09 64.7 86 55.8
CARHR280950 Cardamine hirsuta HOM05D000104 ORTHO05D006241 3.6e-09 64.7 85 60.0
CsaV3_4G005100 Cucumis sativus L. HOM05D000104 ORTHO05D006241 3.6e-09 64.7 86 57.0
AL8G44720 Arabidopsis lyrata HOM05D000104 ORTHO05D006241 4.6e-09 64.3 86 57.0
CSS0036611 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006241 4.6e-09 64.3 87 57.5
BcaB04g20104 Brassica carinata HOM05D000104 ORTHO05D006241 6.1e-09 63.9 86 55.8
BcaC04g23157 Brassica carinata HOM05D000104 ORTHO05D006241 6.1e-09 63.9 86 55.8
C09p11600 Brassica napus HOM05D000104 ORTHO05D006241 6.1e-09 63.9 86 55.8
BolC9t54052H Brassica oleracea HOM05D000104 ORTHO05D006241 6.1e-09 63.9 86 55.8
SGA_v2.0_scaffold248G44899 Striga asiatica HOM05D000104 ORTHO05D006241 6.1e-09 63.9 86 54.7
Oeu024883.1 Olea europaea HOM05D000104 ORTHO05D006241 1.4e-08 62.8 72 59.7
AT5G66750 Arabidopsis thaliana HOM05D000104 ORTHO05D006241 3.0e-08 61.6 86 54.7
Eucgr.I02455 Eucalyptus grandis HOM05D000104 ORTHO05D006241 3.0e-08 61.6 84 57.1
Mapoly0011s0202 Marchantia polymorpha HOM05D000104 ORTHO05D006241 3.0e-08 61.6 78 53.8
Phvul.002G029500 Phaseolus vulgaris HOM05D000104 ORTHO05D006241 3.9e-08 61.2 86 53.5
Pp3c17_19520 Physcomitrium patens HOM05D000104 ORTHO05D006241 3.9e-08 61.2 69 58.0
SHI22928 Sapria himalayana HOM05D000104 ORTHO05D006241 3.9e-08 61.2 86 53.5
TWI73G0548 Tripterygium wilfordii HOM05D000104 ORTHO05D006241 3.9e-08 61.2 86 53.5
VMungo1215G1562 Vigna mungo HOM05D000104 ORTHO05D006241 3.9e-08 61.2 86 53.5
Gohir.D12G065200 Gossypium hirsutum HOM05D000104 ORTHO05D006241 8.8e-08 60.1 40 82.5
Gorai.008G068400 Gossypium raimondii HOM05D000104 ORTHO05D006241 8.8e-08 60.1 40 82.5
Sp2g29930 Schrenkiella parvula HOM05D000104 ORTHO05D006241 8.8e-08 60.1 77 54.5
Lsat_1_v5_gn_2_76200 Lactuca sativa HOM05D000104 ORTHO05D006241 1.1e-07 59.7 77 51.9
SEGI_00841 Sequoiadendron giganteum HOM05D000104 ORTHO05D006241 1.1e-07 59.7 78 55.1
ECA238G3434 Erigeron canadensis HOM05D000104 ORTHO05D006241 1.5e-07 59.3 77 54.5
Glyma.11G067500 Glycine max HOM05D000104 ORTHO05D006241 2.6e-07 58.5 40 80.0
CBR_g48883 Chara braunii HOM05D000104 ORTHO05D006241 4.4e-07 57.8 53 66.0
HanXRQChr07g0192851 Helianthus annuus HOM05D000104 ORTHO05D006241 5.7e-07 57.4 77 49.4
Rhsim08G0115000 Rhododendron simsii HOM05D000030 ORTHO05D000009 2.8e-06 55.1 37 78.4
ATR0733G030 Amborella trichopoda HOM05D000104 ORTHO05D006241 4.8e-06 54.3 78 48.7
PRCOL_00004682 Prasinoderma coloniale HOM05D000104 ORTHO05D006241 6.3e-06 53.9 61 52.5


User provided reference genes

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