Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G184.48 Capsicum annuum HOM05D004662 ORTHO05D005771 7.7e-135 483.8 241 100.0
GSVIVG01026585001 Vitis vinifera HOM05D004662 ORTHO05D005771 3.5e-55 219.2 255 52.9
AUR62014898 Chenopodium quinoa HOM05D004662 ORTHO05D005771 1.5e-53 213.8 258 51.9
Hma1.2p1_0006F.1_g004870 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 9.6e-53 211.1 255 51.4
Solyc05g051070.3 Solanum lycopersicum HOM05D004662 ORTHO05D005771 1.1e-51 207.6 306 45.8
Nitab4.5_0009675g0010 Nicotiana tabacum HOM05D004662 ORTHO05D005771 1.4e-51 207.2 291 48.5
Sopen05g029520 Solanum pennellii HOM05D004662 ORTHO05D005771 1.8e-51 206.8 292 47.3
CAN.G112.7 Capsicum annuum HOM05D004662 ORTHO05D005771 2.4e-51 206.5 292 47.3
Actinidia06666 Actinidia chinensis HOM05D004662 ORTHO05D005771 3.1e-51 206.1 296 44.9
Sabra17G0054100 Salix brachista HOM05D004662 ORTHO05D005771 5.3e-51 205.3 293 45.7
Dinv15114 Davidia involucrata HOM05D004662 ORTHO05D005771 9.0e-51 204.5 212 58.5
PGSC0003DMG400006987 Solanum tuberosum HOM05D004662 ORTHO05D005771 9.0e-51 204.5 292 46.9
Cfa012638 Carpinus fangiana HOM05D004662 ORTHO05D005771 1.2e-50 204.1 296 45.9
AUR62031104 Chenopodium quinoa HOM05D004662 ORTHO05D005771 1.2e-50 204.1 256 50.4
Haze_08022 Corylus avellana HOM05D004662 ORTHO05D005771 1.2e-50 204.1 296 45.9
CSS0002771 Camellia sinensis var. sinensis HOM05D004662 ORTHO05D005771 1.5e-50 203.8 296 45.6
Nitab4.5_0000777g0160 Nicotiana tabacum HOM05D004662 ORTHO05D005771 2.0e-50 203.4 290 47.9
THA.LOC104815455 Tarenaya hassleriana HOM05D004662 ORTHO05D005771 2.0e-50 203.4 293 46.1
Dinv09932 Davidia involucrata HOM05D004662 ORTHO05D005771 2.6e-50 203.0 301 45.2
Ciclev10016087m.g Citrus clementina HOM05D004662 ORTHO05D005771 3.4e-50 202.6 294 45.2
Nn5g28723 Nelumbo nucifera HOM05D004662 ORTHO05D005771 4.5e-50 202.2 287 46.3
Gohir.D03G048900 Gossypium hirsutum HOM05D004662 ORTHO05D005771 7.6e-50 201.4 292 46.9
Gorai.003G050200 Gossypium raimondii HOM05D004662 ORTHO05D005771 7.6e-50 201.4 292 46.9
Cpa.g.sc42.90 Carica papaya HOM05D004662 ORTHO05D005771 1.0e-49 201.1 295 45.4
CDE08G1373 Ceratophyllum demersum HOM05D004662 ORTHO05D005771 1.3e-49 200.7 288 46.2
Manes.01G056600 Manihot esculenta HOM05D004662 ORTHO05D005771 1.3e-49 200.7 295 45.8
Rhsim10G0141700 Rhododendron simsii HOM05D004662 ORTHO05D005771 1.3e-49 200.7 292 45.5
CiPaw.11G076400 Carya illinoinensis HOM05D004662 ORTHO05D005771 1.7e-49 200.3 296 46.3
QL09p054497 Quercus lobata HOM05D004662 ORTHO05D005771 1.7e-49 200.3 326 42.3
Duzib187G0757 Durio zibethinus HOM05D004662 ORTHO05D005771 2.2e-49 199.9 291 46.7
Peaxi162Scf00424g00027 Petunia axillaris HOM05D004662 ORTHO05D005771 2.2e-49 199.9 291 46.4
Potri.017G060200 Populus trichocarpa HOM05D004662 ORTHO05D005771 2.2e-49 199.9 295 44.7
TAR376G0935 Trochodendron aralioides HOM05D004662 ORTHO05D005771 2.2e-49 199.9 287 46.0
Lj4A308T25 Lonicera japonica HOM05D004662 ORTHO05D005771 2.9e-49 199.5 294 46.3
Lalb_Chr01g0006671 Lupinus albus HOM05D004662 ORTHO05D005771 2.9e-49 199.5 295 45.4
Aqoxy6G00053 Aquilegia oxysepala HOM05D004662 ORTHO05D005771 3.8e-49 199.1 288 46.2
Atru.chr10.136 Acer truncatum HOM05D004662 ORTHO05D005771 4.9e-49 198.7 293 45.7
Gohir.A02G138300 Gossypium hirsutum HOM05D004662 ORTHO05D005771 4.9e-49 198.7 292 45.5
QL12p002363 Quercus lobata HOM05D004662 ORTHO05D005771 4.9e-49 198.7 296 44.6
vmacro12830 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 4.9e-49 198.7 292 45.2
Ah.05g168710 Amaranthus hybridus HOM05D004662 ORTHO05D005771 6.5e-49 198.4 290 45.5
Peaxi162Scf00751g00215 Petunia axillaris HOM05D004662 ORTHO05D005771 6.5e-49 198.4 297 44.4
Thecc.01G121500 Theobroma cacao HOM05D004662 ORTHO05D005771 6.5e-49 198.4 294 45.9
TWI75G1338 Tripterygium wilfordii HOM05D004662 ORTHO05D005771 6.5e-49 198.4 293 45.1
MELO3C023475.2 Cucumis melo HOM05D004662 ORTHO05D005771 8.4e-49 198.0 296 45.6
CsaV3_7G031820 Cucumis sativus L. HOM05D004662 ORTHO05D005771 8.4e-49 198.0 296 45.6
Eucgr.C00068 Eucalyptus grandis HOM05D004662 ORTHO05D005771 8.4e-49 198.0 293 45.1
SHI06523 Sapria himalayana HOM05D004662 ORTHO05D005771 8.4e-49 198.0 285 45.6
Lj3g0018695 Lotus japonicus HOM05D004662 ORTHO05D005771 1.4e-48 197.2 296 44.3
COL.COLO4_22423 Corchorus olitorius HOM05D004662 ORTHO05D005771 1.9e-48 196.8 294 44.9
Glyma.09G114600 Glycine max HOM05D004662 ORTHO05D005771 1.9e-48 196.8 292 46.2
HanXRQChr03g0092051 Helianthus annuus HOM05D004662 ORTHO05D005771 1.9e-48 196.8 292 45.2
Aa31LG8G5630 Aethionema arabicum HOM05D004662 ORTHO05D005771 2.5e-48 196.4 292 44.9
arahy.Tifrunner.gnm1.ann1.MTS4VB Arachis hypogaea HOM05D004662 ORTHO05D005771 2.5e-48 196.4 293 44.7
CARHR094200 Cardamine hirsuta HOM05D004662 ORTHO05D005771 3.2e-48 196.1 291 44.0
ClCG01G004580 Citrullus lanatus HOM05D004662 ORTHO05D005771 3.2e-48 196.1 296 45.3
ClCG01G004620 Citrullus lanatus HOM05D004662 ORTHO05D005771 3.2e-48 196.1 296 45.3
Thhalv10021236m.g Eutrema salsugineum HOM05D004662 ORTHO05D005771 3.2e-48 196.1 288 43.8
Glyma.14G078500 Glycine max HOM05D004662 ORTHO05D005771 3.2e-48 196.1 292 46.6
PSO210G1432 Papaver somniferum HOM05D004662 ORTHO05D005771 3.2e-48 196.1 287 44.6
BcaB04g20746 Brassica carinata HOM05D004662 ORTHO05D005771 4.2e-48 195.7 287 44.3
Lalb_Chr03g0030851 Lupinus albus HOM05D004662 ORTHO05D005771 4.2e-48 195.7 298 45.0
Lalb_Chr03g0030921 Lupinus albus HOM05D004662 ORTHO05D005771 4.2e-48 195.7 298 45.0
Lalb_Chr03g0030931 Lupinus albus HOM05D004662 ORTHO05D005771 4.2e-48 195.7 298 45.0
Sed0008619 Sechium edule HOM05D004662 ORTHO05D005771 4.2e-48 195.7 296 45.3
PGR142G0905 Punica granatum HOM05D004662 ORTHO05D005771 7.1e-48 194.9 290 45.2
EL10Ac8g20458 Beta vulgaris HOM05D004662 ORTHO05D005771 9.3e-48 194.5 286 45.5
Sp3g16880 Schrenkiella parvula HOM05D004662 ORTHO05D005771 9.3e-48 194.5 291 44.0
Sc23g0004520 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.2e-47 194.1 294 44.6
Cc07_g17380 Coffea canephora HOM05D004662 ORTHO05D005771 1.6e-47 193.7 293 44.7
Ca_07798_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 2.1e-47 193.4 296 44.3
DCAR_001862 Daucus carota HOM05D004662 ORTHO05D005771 2.1e-47 193.4 289 43.9
DCAR_011479 Daucus carota HOM05D004662 ORTHO05D005771 2.1e-47 193.4 289 43.9
Glyma.06G234100 Glycine max HOM05D004662 ORTHO05D005771 2.1e-47 193.4 294 45.6
TAR628G0746 Trochodendron aralioides HOM05D004662 ORTHO05D005771 2.1e-47 193.4 287 44.9
BcaC05g28571 Brassica carinata HOM05D004662 ORTHO05D005771 2.7e-47 193.0 289 43.3
C05p46730 Brassica napus HOM05D004662 ORTHO05D005771 2.7e-47 193.0 289 43.3
BolC5t33400H Brassica oleracea HOM05D004662 ORTHO05D005771 2.7e-47 193.0 289 43.3
BraA05t21923Z Brassica rapa HOM05D004662 ORTHO05D005771 2.7e-47 193.0 290 43.1
CANSAT21G0749 Cannabis sativa HOM05D004662 ORTHO05D005771 2.7e-47 193.0 294 43.2
BcaB06g25932 Brassica carinata HOM05D004662 ORTHO05D005771 4.6e-47 192.2 291 43.0
Ca_05756_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 4.6e-47 192.2 296 43.9
A05p30810 Brassica napus HOM05D004662 ORTHO05D005771 6.0e-47 191.8 290 42.8
ECA240G2833 Erigeron canadensis HOM05D004662 ORTHO05D005771 6.0e-47 191.8 292 44.2
ATR0051G034 Amborella trichopoda HOM05D004662 ORTHO05D005771 1.3e-46 190.7 289 44.3
Prupe.7G048200 Prunus persica HOM05D004662 ORTHO05D005771 1.8e-46 190.3 294 43.2
Phvul.008G233000 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 2.3e-46 189.9 296 44.6
Migut.M00378 Erythranthe guttata HOM05D004662 ORTHO05D005771 3.9e-46 189.1 292 41.4
Medtr5g095510 Medicago truncatula HOM05D004662 ORTHO05D005771 5.1e-46 188.7 296 43.6
Phvul.006G049400 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 1.1e-45 187.6 296 44.3
ATR0772G105 Amborella trichopoda HOM05D004662 ORTHO05D005771 1.5e-45 187.2 289 43.9
AL3G32170 Arabidopsis lyrata HOM05D004662 ORTHO05D005771 1.5e-45 187.2 293 42.0
RcHm_v2.0_Chr4g0411521 Rosa chinensis HOM05D004662 ORTHO05D005771 1.9e-45 186.8 295 42.4
MBI17_g31489_MAGBIO Magnolia biondii HOM05D004662 ORTHO05D005771 3.3e-45 186.0 293 42.3
SEGI_04038 Sequoiadendron giganteum HOM05D004662 ORTHO05D005771 3.3e-45 186.0 289 43.3
AT3G18790 Arabidopsis thaliana HOM05D004662 ORTHO05D005771 5.7e-45 185.3 293 42.0
MSTRG.2689 Avicennia marina HOM05D004662 ORTHO05D005771 9.6e-45 184.5 293 42.3
Carub.0003s1861 Capsella rubella HOM05D004662 ORTHO05D005771 1.6e-44 183.7 290 42.1
FvH4_4g12620 Fragaria vesca HOM05D004662 ORTHO05D005771 4.8e-44 182.2 295 41.7
FAN12G2661 Fragaria x ananassa HOM05D004662 ORTHO05D005771 4.8e-44 182.2 295 41.7
FAN17G2854 Fragaria x ananassa HOM05D004662 ORTHO05D005771 4.8e-44 182.2 295 41.7
MD12G1216200 Malus domestica HOM05D004662 ORTHO05D005771 6.3e-44 181.8 294 41.2
SGA_v2.0_scaffold137G35115 Striga asiatica HOM05D004662 ORTHO05D005771 8.2e-44 181.4 290 40.0
SalBow5G3393 Salvia bowleyana HOM05D004662 ORTHO05D005771 1.8e-43 180.3 293 41.3
FAN07G1901 Fragaria x ananassa HOM05D004662 ORTHO05D005771 5.3e-43 178.7 295 41.4
AagrBONN_evm.TU.Sc2ySwM_368.1726 Anthoceros agrestis HOM05D004662 ORTHO05D005771 1.5e-42 177.2 284 42.3
ClCG09G016740 Citrullus lanatus HOM05D004662 ORTHO05D005771 2.9e-41 172.9 132 67.4
Mapoly0026s0083 Marchantia polymorpha HOM05D004662 ORTHO05D005771 6.5e-41 171.8 286 40.2
TPR.G8614 Trifolium pratense HOM05D004662 ORTHO05D005771 1.9e-40 170.2 132 66.7
BcaC09g48849 Brassica carinata HOM05D004662 ORTHO05D005771 7.2e-40 168.3 199 50.8
Psat2g008160 Pisum sativum HOM05D004662 ORTHO05D005771 9.3e-40 167.9 132 65.9
SMO134G0084 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 9.3e-40 167.9 255 42.0
Pp3c13_15060 Physcomitrium patens HOM05D004662 ORTHO05D005771 1.2e-39 167.5 274 41.2
COL.COLO4_10520 Corchorus olitorius HOM05D004662 ORTHO05D005771 2.7e-39 166.4 242 44.2
C01p45240 Brassica napus HOM05D004662 ORTHO05D005771 7.9e-39 164.9 284 40.5
Gohir.A03G042500 Gossypium hirsutum HOM05D004662 ORTHO05D005771 7.9e-39 164.9 267 43.4
Zm00001eb246450 Zea mays HOM05D004662 ORTHO05D005771 1.3e-38 164.1 301 38.5
unitig_699.g19713 Utricularia gibba HOM05D004662 ORTHO05D005771 1.8e-38 163.7 132 64.4
Lsat_1_v5_gn_3_121781 Lactuca sativa HOM05D004662 ORTHO05D005771 2.3e-38 163.3 276 41.7
Hma1.2p1_0006F.1_g004860 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 2.5e-37 159.8 127 65.4
Cre10.g427150 Chlamydomonas reinhardtii HOM05D004662 ORTHO05D005771 1.3e-36 157.5 264 39.0
Peaxi162Scf00134g00137 Petunia axillaris HOM05D004662 ORTHO05D005771 1.3e-36 157.5 132 61.4
HPP92_002769 Vanilla planifolia HOM05D004662 ORTHO05D005771 1.4e-35 154.1 132 59.8
SMO274G0029 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 1.8e-35 153.7 292 36.6
CBR_g84973 Chara braunii HOM05D004662 ORTHO05D005771 5.3e-35 152.1 315 34.9
MCO03G092 Micromonas commoda HOM05D004662 ORTHO05D005771 2.0e-34 150.2 267 38.2
Prupe.6G322400 Prunus persica HOM05D004662 ORTHO05D005771 2.6e-34 149.8 234 45.3
Sc23g0004080 Simmondsia chinensis HOM05D004662 ORTHO05D005771 2.1e-31 140.2 236 40.3
Atru.chr9.1310 Acer truncatum HOM05D004662 ORTHO05D005771 5.9e-26 122.1 98 62.2
Haze_26219 Corylus avellana HOM05D004662 ORTHO05D005771 2.9e-25 119.8 166 46.4
PRCOL_00003362 Prasinoderma coloniale HOM05D004662 ORTHO05D005771 8.5e-25 118.2 290 33.1
Zm00001eb267310 Zea mays HOM05D004662 ORTHO05D005771 2.1e-23 113.6 80 62.5
Zm00001eb040030 Zea mays HOM05D000558 ORTHO05D003075 1.1e-16 91.3 61 63.9
VMungo1309G1313 Vigna mungo HOM05D004662 ORTHO05D005771 3.6e-15 86.3 47 83.0
Sc23g0003810 Simmondsia chinensis HOM05D004662 ORTHO05D005771 4.7e-15 85.9 132 42.4
Zm00001eb162730 Zea mays HOM05D000558 ORTHO05D003075 2.3e-14 83.6 69 59.4
Dinv05182 Davidia involucrata HOM05D004662 ORTHO05D005771 1.2e-13 81.3 177 36.7
A01p35650 Brassica napus HOM05D004662 ORTHO05D005771 1.5e-13 80.9 210 33.3
BraA01t03647Z Brassica rapa HOM05D004662 ORTHO05D005771 4.4e-13 79.3 210 33.3
Gohir.D03G125150 Gossypium hirsutum HOM05D004662 ORTHO05D005771 7.7e-10 68.6 157 38.2
Sc23g0004530 Simmondsia chinensis HOM05D004662 ORTHO05D005771 2.2e-09 67.0 50 70.0
vmacro12447 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 3.8e-09 66.2 56 67.9
VMungo1309G1891 Vigna mungo HOM05D004662 ORTHO05D005771 1.1e-08 64.7 50 70.0
Gorai.003G131300 Gossypium raimondii HOM05D004662 ORTHO05D005771 1.5e-08 64.3 168 33.9
CAN.G1058.32 Capsicum annuum HOM05D004662 ORTHO05D005771 2.5e-08 63.5 52 75.0
VMungo0720G0221 Vigna mungo HOM05D004662 ORTHO05D005771 6.1e-07 58.9 49 63.3
Os02g0602500 Oryza sativa ssp. japonica HOM05D004662 ORTHO05D005771 8.0e-07 58.5 51 60.8
Zm00001eb424510 Zea mays HOM05D004662 ORTHO05D005771 1.0e-06 58.2 58 48.3
VMungo0540G2311 Vigna mungo HOM05D004662 ORTHO05D005771 3.0e-06 56.6 50 64.0


User provided reference genes

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