Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G184.38 Capsicum annuum HOM05D005544 ORTHO05D007303 2.5e-255 885.2 533 100.0
Nitab4.5_0009496g0010 Nicotiana tabacum HOM05D005544 ORTHO05D007303 6.5e-219 764.2 531 78.0
Nitab4.5_0001651g0120 Nicotiana tabacum HOM05D005544 ORTHO05D007303 9.4e-218 760.4 531 76.8
Sopen05g006280 Solanum pennellii HOM05D005544 ORTHO05D007303 1.2e-217 760.0 532 75.8
PGSC0003DMG400043560 Solanum tuberosum HOM05D005544 ORTHO05D007303 8.0e-217 757.3 532 83.6
Nitab4.5_0015534g0010 Nicotiana tabacum HOM05D005544 ORTHO05D007303 2.2e-214 749.2 531 76.8
Solyc05g010470.4 Solanum lycopersicum HOM05D005544 ORTHO05D007303 7.2e-210 734.2 478 79.5
Cc01_g20090 Coffea canephora HOM05D005544 ORTHO05D007303 6.0e-188 661.4 530 73.6
CSS0033644 Camellia sinensis var. sinensis HOM05D005544 ORTHO05D007303 3.0e-179 632.5 529 62.8
Oeu047906.1 Olea europaea HOM05D005544 ORTHO05D007303 1.1e-178 630.6 534 62.2
Rhsim13G0018400 Rhododendron simsii HOM05D005544 ORTHO05D007303 9.9e-175 617.5 530 63.6
DCAR_018371 Daucus carota HOM05D005544 ORTHO05D007303 8.3e-174 614.4 528 70.3
Dinv11286 Davidia involucrata HOM05D005544 ORTHO05D007303 1.6e-172 610.1 530 64.5
Lj1C40T13 Lonicera japonica HOM05D005544 ORTHO05D007303 1.7e-171 606.7 531 61.2
vmacro02516 Vaccinium macrocarpon HOM05D005544 ORTHO05D007303 1.1e-170 604.0 538 60.0
Lsat_1_v5_gn_5_189761 Lactuca sativa HOM05D005544 ORTHO05D007303 2.8e-169 599.4 535 59.4
Peaxi162Scf00017g00211 Petunia axillaris HOM05D005544 ORTHO05D007303 2.4e-168 596.3 533 63.0
Prupe.1G201800 Prunus persica HOM05D005544 ORTHO05D007303 1.5e-167 593.6 557 66.6
Ciclev10019671m.g Citrus clementina HOM05D005544 ORTHO05D007303 2.0e-167 593.2 530 61.7
TWI59G1451 Tripterygium wilfordii HOM05D005544 ORTHO05D007303 2.0e-167 593.2 533 59.3
Duzib211G0556 Durio zibethinus HOM05D005544 ORTHO05D007303 1.1e-165 587.4 536 59.7
MD03G1274200 Malus domestica HOM05D005544 ORTHO05D007303 1.4e-165 587.0 555 59.8
QL12p023649 Quercus lobata HOM05D005544 ORTHO05D007303 4.2e-165 585.5 531 67.8
Atru.chr5.1295 Acer truncatum HOM05D005544 ORTHO05D007303 1.2e-164 583.9 528 67.4
MD11G1296600 Malus domestica HOM05D005544 ORTHO05D007303 1.2e-164 583.9 555 60.0
QL12p023600 Quercus lobata HOM05D005544 ORTHO05D007303 2.7e-164 582.8 531 67.2
QL02p074655 Quercus lobata HOM05D005544 ORTHO05D007303 3.5e-164 582.4 531 67.6
QL05p077001 Quercus lobata HOM05D005544 ORTHO05D007303 6.0e-164 581.6 531 67.2
Potri.014G135600 Populus trichocarpa HOM05D005544 ORTHO05D007303 1.3e-163 580.5 531 61.2
COL.COLO4_08045 Corchorus olitorius HOM05D005544 ORTHO05D007303 6.6e-163 578.2 537 58.5
ECA248G0063 Erigeron canadensis HOM05D005544 ORTHO05D007303 6.6e-163 578.2 535 60.4
Thecc.01G288500 Theobroma cacao HOM05D005544 ORTHO05D007303 1.5e-162 577.0 534 58.6
RcHm_v2.0_Chr7g0215731 Rosa chinensis HOM05D005544 ORTHO05D007303 2.5e-162 576.2 551 65.9
SGA_v2.0_scaffold172G39056 Striga asiatica HOM05D005544 ORTHO05D007303 3.3e-162 575.9 537 57.4
TAR362G0205 Trochodendron aralioides HOM05D005544 ORTHO05D007303 3.3e-162 575.9 526 66.7
Manes.02G181800 Manihot esculenta HOM05D005544 ORTHO05D007303 5.6e-162 575.1 533 58.7
Cfa004766 Carpinus fangiana HOM05D005544 ORTHO05D007303 7.3e-162 574.7 524 66.8
CsaV3_7G028370 Cucumis sativus L. HOM05D005544 ORTHO05D007303 9.6e-162 574.3 531 66.9
SalBow2G1504 Salvia bowleyana HOM05D005544 ORTHO05D007303 9.6e-162 574.3 531 58.4
CiPaw.07G098400 Carya illinoinensis HOM05D005544 ORTHO05D007303 1.6e-161 573.5 535 66.7
Potri.002G213500 Populus trichocarpa HOM05D005544 ORTHO05D007303 1.6e-161 573.5 531 58.2
Haze_10363 Corylus avellana HOM05D005544 ORTHO05D007303 6.2e-161 571.6 524 66.4
Sabra14G0102000 Salix brachista HOM05D005544 ORTHO05D007303 6.2e-161 571.6 531 62.0
Actinidia00706 Actinidia chinensis HOM05D005544 ORTHO05D007303 1.8e-160 570.1 529 58.0
PGR044G1528 Punica granatum HOM05D005544 ORTHO05D007303 4.0e-160 568.9 530 66.4
PGR088G0006 Punica granatum HOM05D005544 ORTHO05D007303 4.0e-160 568.9 530 66.4
HanXRQChr11g0334851 Helianthus annuus HOM05D005544 ORTHO05D007303 5.3e-160 568.5 539 57.5
MELO3C015885.2 Cucumis melo HOM05D005544 ORTHO05D007303 6.9e-160 568.2 529 66.5
FvH4_5g25500 Fragaria vesca HOM05D005544 ORTHO05D007303 2.0e-159 566.6 552 64.5
Hma1.2p1_0358F.1_g134770 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 7.6e-159 564.7 500 69.4
FAN08G3375 Fragaria x ananassa HOM05D005544 ORTHO05D007303 1.3e-158 563.9 552 64.7
FAN18G1194 Fragaria x ananassa HOM05D005544 ORTHO05D007303 1.3e-158 563.9 552 64.7
Lalb_Chr02g0143021 Lupinus albus HOM05D005544 ORTHO05D007303 1.3e-158 563.9 530 65.7
CANSAT25G0498 Cannabis sativa HOM05D005544 ORTHO05D007303 1.7e-158 563.5 536 65.9
Cpa.g.sc9.148 Carica papaya HOM05D005544 ORTHO05D007303 2.9e-158 562.8 532 57.0
Sed0004995 Sechium edule HOM05D005544 ORTHO05D007303 8.4e-158 561.2 528 65.2
Phvul.007G167300 Phaseolus vulgaris HOM05D005544 ORTHO05D007303 1.1e-157 560.8 531 56.7
VMungo0720G2755 Vigna mungo HOM05D005544 ORTHO05D007303 1.1e-157 560.8 530 56.8
Migut.O00595 Erythranthe guttata HOM05D005544 ORTHO05D007303 3.2e-157 559.3 538 56.1
Migut.N02122 Erythranthe guttata HOM05D005544 ORTHO05D007303 9.3e-157 557.8 538 56.3
Nn3g18705 Nelumbo nucifera HOM05D005544 ORTHO05D007303 4.6e-156 555.4 533 63.6
Nn4g24755 Nelumbo nucifera HOM05D005544 ORTHO05D007303 6.0e-156 555.1 533 63.8
FAN13G2222 Fragaria x ananassa HOM05D005544 ORTHO05D007303 3.0e-155 552.7 552 64.5
Gohir.D08G054000 Gossypium hirsutum HOM05D005544 ORTHO05D007303 6.2e-153 545.0 527 57.5
Gorai.004G054300 Gossypium raimondii HOM05D005544 ORTHO05D007303 6.2e-153 545.0 527 57.5
Ca_10382_v3 Cicer arietinum L. HOM05D005544 ORTHO05D007303 1.4e-152 543.9 530 56.0
Ca_29660_v3 Cicer arietinum L. HOM05D005544 ORTHO05D007303 1.4e-152 543.9 530 56.0
Gohir.A08G044300 Gossypium hirsutum HOM05D005544 ORTHO05D007303 5.3e-152 542.0 527 56.9
Medtr1g089260 Medicago truncatula HOM05D005544 ORTHO05D007303 9.0e-152 541.2 534 55.4
AUR62042230 Chenopodium quinoa HOM05D005544 ORTHO05D007303 5.8e-151 538.5 532 62.6
unitig_22.g6695 Utricularia gibba HOM05D005544 ORTHO05D007303 1.3e-150 537.3 534 52.1
AUR62037787 Chenopodium quinoa HOM05D005544 ORTHO05D007303 2.9e-150 536.2 532 62.6
Ah.09g228790 Amaranthus hybridus HOM05D005544 ORTHO05D007303 4.9e-150 535.4 534 62.4
THA.LOC104802213 Tarenaya hassleriana HOM05D005544 ORTHO05D007303 4.9e-150 535.4 529 54.3
QL12p023632 Quercus lobata HOM05D005544 ORTHO05D007303 7.1e-149 531.6 541 54.7
Lj5g0002288 Lotus japonicus HOM05D005544 ORTHO05D007303 7.9e-148 528.1 541 55.5
Aa31LG1G29410 Aethionema arabicum HOM05D005544 ORTHO05D007303 1.8e-144 516.9 529 53.5
Glyma.02G151500 Glycine max HOM05D005544 ORTHO05D007303 1.8e-144 516.9 533 55.2
Hma1.2p1_0358F.1_g134780 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 1.5e-143 513.8 529 63.3
Sc17g0005190 Simmondsia chinensis HOM05D005544 ORTHO05D007303 7.6e-143 511.5 535 61.5
Actinidia24289 Actinidia chinensis HOM05D005544 ORTHO05D007303 6.5e-142 508.4 529 53.7
Glyma.10G022600 Glycine max HOM05D005544 ORTHO05D007303 1.9e-141 506.9 521 60.8
PSO675G2029 Papaver somniferum HOM05D005544 ORTHO05D007303 4.2e-141 505.8 530 60.2
Thhalv10001392m.g Eutrema salsugineum HOM05D005544 ORTHO05D007303 9.3e-141 504.6 532 51.7
BolC3t12848H Brassica oleracea HOM05D005544 ORTHO05D007303 6.0e-140 501.9 532 51.3
PSO541G2439 Papaver somniferum HOM05D005544 ORTHO05D007303 1.3e-139 500.7 535 59.8
Sp4g29910 Schrenkiella parvula HOM05D005544 ORTHO05D007303 1.8e-139 500.4 533 50.7
AT2G47990 Arabidopsis thaliana HOM05D005544 ORTHO05D007303 6.7e-139 498.4 530 54.0
CARHR143370 Cardamine hirsuta HOM05D005544 ORTHO05D007303 1.5e-138 497.3 529 51.4
C03p02930 Brassica napus HOM05D005544 ORTHO05D007303 2.5e-138 496.5 532 50.9
AL4G47580 Arabidopsis lyrata HOM05D005544 ORTHO05D007303 4.3e-138 495.7 529 51.4
Carub.0004s3071 Capsella rubella HOM05D005544 ORTHO05D007303 9.6e-138 494.6 527 50.5
Aqoxy2G03155 Aquilegia oxysepala HOM05D005544 ORTHO05D007303 2.1e-137 493.4 538 59.5
BcaB01g05978 Brassica carinata HOM05D005544 ORTHO05D007303 4.8e-137 492.3 532 50.8
A03p02590 Brassica napus HOM05D005544 ORTHO05D007303 8.2e-137 491.5 531 50.8
BraA03t09620Z Brassica rapa HOM05D005544 ORTHO05D007303 1.8e-136 490.3 532 50.8
BcaB02g08729 Brassica carinata HOM05D005544 ORTHO05D007303 2.6e-135 486.5 527 58.8
Psat6g168560 Pisum sativum HOM05D005544 ORTHO05D007303 3.9e-131 472.6 459 64.9
QL12p023536 Quercus lobata HOM05D005544 ORTHO05D007303 4.5e-127 459.1 326 69.0
EL10Ac2g03124 Beta vulgaris HOM05D005544 ORTHO05D007303 1.1e-125 454.5 508 57.7
GSVIVG01011022001 Vitis vinifera HOM05D005544 ORTHO05D007303 7.2e-125 451.8 531 58.8
MBI11_g11983_MAGBIO Magnolia biondii HOM05D005544 ORTHO05D007303 8.8e-123 444.9 530 48.3
ATR0691G265 Amborella trichopoda HOM05D005544 ORTHO05D007303 4.5e-111 406.0 526 44.7
CDE07G0705 Ceratophyllum demersum HOM05D005544 ORTHO05D007303 3.7e-105 386.3 528 43.8
SHI20711 Sapria himalayana HOM05D005544 ORTHO05D007303 1.8e-104 384.0 526 45.6
Os07g0224900 Oryza sativa ssp. japonica HOM05D005544 ORTHO05D007303 1.2e-103 381.3 529 43.1
Zm00001eb303580 Zea mays HOM05D005544 ORTHO05D007303 1.1e-101 374.8 542 42.1
Sc17g0005180 Simmondsia chinensis HOM05D005544 ORTHO05D007303 9.1e-88 328.6 387 60.2
Pp3c8_11620 Physcomitrium patens HOM05D005544 ORTHO05D007303 2.4e-80 303.9 524 44.5
HPP92_015605 Vanilla planifolia HOM05D005544 ORTHO05D007303 3.9e-78 296.6 277 52.7
Mapoly0066s0060 Marchantia polymorpha HOM05D005544 ORTHO05D007303 9.5e-77 292.0 533 44.1
SMO119G0317 Selaginella moellendorffii HOM05D005544 ORTHO05D007303 2.6e-74 283.9 528 38.4
TPR.G16943 Trifolium pratense HOM05D005544 ORTHO05D007303 9.2e-72 275.4 534 45.5
SEGI_38002 Sequoiadendron giganteum HOM05D005544 ORTHO05D007303 1.6e-68 264.6 332 42.8
Sed0004423 Sechium edule HOM05D005544 ORTHO05D007303 7.5e-66 255.8 398 39.7
Hma1.2p1_1992F.1_g310250 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 7.8e-63 245.7 307 47.2
Cre03.g196850 Chlamydomonas reinhardtii HOM05D005544 ORTHO05D007303 2.6e-58 230.7 504 32.7
PRCOL_00005139 Prasinoderma coloniale HOM05D005544 ORTHO05D007303 2.9e-49 200.7 518 29.2
CBR_g11128 Chara braunii HOM05D005544 ORTHO05D007303 6.6e-46 189.5 382 32.2
COL.COLO4_19838 Corchorus olitorius HOM05D005544 ORTHO05D007303 1.1e-45 188.7 224 49.6
PGSC0003DMG400036093 Solanum tuberosum HOM05D005544 ORTHO05D007303 5.3e-43 179.9 101 81.2
Hma1.2p1_3416F.1_g335940 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 4.4e-42 176.8 307 38.4
SalBow3G0398 Salvia bowleyana HOM05D005544 ORTHO05D002055 4.0e-35 153.7 181 48.1
C04p71990 Brassica napus HOM05D002853 ORTHO05D003030 3.7e-28 130.6 131 51.1
BcaC06g36661 Brassica carinata HOM05D005544 ORTHO05D027614 1.4e-27 128.6 119 58.0
CAN.G111.2 Capsicum annuum HOM05D000002 ORTHO05D000001 5.3e-27 126.7 115 59.1
Sc17g0005170 Simmondsia chinensis HOM05D005544 ORTHO05D007303 3.4e-26 124.0 102 63.7
HPP92_015604 Vanilla planifolia HOM05D005544 ORTHO05D007303 3.5e-23 114.0 248 36.3
SGA_v2.0_scaffold75G25026 Striga asiatica HOM05D005544 ORTHO05D007303 6.0e-23 113.2 104 54.8
CAN.G708.1 Capsicum annuum HOM05D005544 ORTHO05D027614 3.0e-22 110.9 75 80.0
BolC7t40575H Brassica oleracea HOM05D005544 ORTHO05D027614 8.7e-22 109.4 102 58.8
Cfa022606 Carpinus fangiana HOM05D005544 ORTHO05D007303 3.7e-20 104.0 552 25.5
A07p00730 Brassica napus HOM05D005544 ORTHO05D027614 1.2e-18 99.0 157 42.0
SGA_v2.0_scaffold419G51287 Striga asiatica HOM05D005544 ORTHO05D007303 2.4e-11 74.7 71 52.1
SGA_v2.0_scaffold175G39332 Striga asiatica HOM05D005544 ORTHO05D007303 4.1e-11 73.9 71 50.7
Nn3g19125 Nelumbo nucifera HOM05D005544 ORTHO05D007303 7.7e-10 69.7 57 56.1
SEGI_41146 Sequoiadendron giganteum HOM05D005544 ORTHO05D007303 2.2e-09 68.2 70 48.6
SGA_v2.0_scaffold45G17255 Striga asiatica HOM05D005544 ORTHO05D007303 3.2e-08 64.3 71 46.5


User provided reference genes

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