Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1733.2 Capsicum annuum HOM05D004190 ORTHO05D004692 1.7e-160 569.3 299 100.0
CAN.G745.26 Capsicum annuum HOM05D004190 ORTHO05D004692 6.0e-97 358.2 293 68.3
CAN.G745.23 Capsicum annuum HOM05D004190 ORTHO05D004692 1.7e-91 340.1 287 67.6
CAN.G1733.1 Capsicum annuum HOM05D004190 ORTHO05D004692 5.7e-71 271.9 314 51.6
CAN.G1733.5 Capsicum annuum HOM05D004190 ORTHO05D004692 2.8e-70 269.6 287 58.2
CAN.G1733.7 Capsicum annuum HOM05D000006 ORTHO05D004030 1.3e-62 244.2 259 56.0
CAN.G745.24 Capsicum annuum HOM05D004190 ORTHO05D004692 9.2e-45 184.9 126 77.8
PGSC0003DMG400026344 Solanum tuberosum HOM05D004190 ORTHO05D004692 1.0e-43 181.4 228 48.7
Sopen11g027450 Solanum pennellii HOM05D004190 ORTHO05D004692 1.5e-42 177.6 231 46.3
Solyc11g068740.2 Solanum lycopersicum HOM05D004190 ORTHO05D004692 3.3e-42 176.4 231 45.9
Peaxi162Scf00224g00513 Petunia axillaris HOM05D004190 ORTHO05D004692 5.2e-40 169.1 206 48.1
CAN.G1733.3 Capsicum annuum HOM05D004190 ORTHO05D004692 1.7e-38 164.1 143 61.5
Nitab4.5_0003516g0050 Nicotiana tabacum HOM05D004190 ORTHO05D004692 4.1e-37 159.5 227 41.4
Nitab4.5_0001135g0020 Nicotiana tabacum HOM05D004190 ORTHO05D004692 4.6e-36 156.0 227 42.3
CAN.G1733.4 Capsicum annuum HOM05D004190 ORTHO05D004692 2.9e-30 136.7 133 60.2
CAN.G1733.6 Capsicum annuum HOM05D004190 ORTHO05D004692 4.9e-30 136.0 233 42.1
PGSC0003DMG400024773 Solanum tuberosum HOM05D004190 ORTHO05D004692 1.8e-24 117.5 123 49.6
CAN.G745.25 Capsicum annuum HOM05D004190 ORTHO05D004692 4.0e-24 116.3 152 43.4
CAN.G745.27 Capsicum annuum HOM05D004190 ORTHO05D004692 1.5e-23 114.4 97 68.0
PGSC0003DMG400006228 Solanum tuberosum HOM05D004190 ORTHO05D004692 1.0e-19 101.7 178 38.8
Actinidia07264 Actinidia chinensis HOM05D004190 ORTHO05D004692 1.5e-18 97.8 204 31.9
ClCG03G001470 Citrullus lanatus HOM05D004190 ORTHO05D004692 4.7e-17 92.8 123 37.4
Oeu048854.1 Olea europaea HOM05D004190 ORTHO05D004692 1.8e-16 90.9 135 36.3
Sed0018693 Sechium edule HOM05D004190 ORTHO05D004692 2.4e-16 90.5 135 38.5
CsaV3_1G034280 Cucumis sativus L. HOM05D004190 ORTHO05D004692 4.0e-16 89.7 141 36.2
Gohir.A13G227300 Gossypium hirsutum HOM05D004190 ORTHO05D004692 4.0e-16 89.7 189 32.8
Gorai.013G263700 Gossypium raimondii HOM05D004190 ORTHO05D004692 5.2e-16 89.4 190 31.1
Atru.chr3.3912 Acer truncatum HOM05D004190 ORTHO05D004692 8.9e-16 88.6 125 36.0
THA.LOC104810778 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 1.2e-15 88.2 125 37.6
Prupe.6G076700 Prunus persica HOM05D004190 ORTHO05D004692 2.6e-15 87.0 121 35.5
Sed0024869 Sechium edule HOM05D004190 ORTHO05D004692 2.6e-15 87.0 124 36.3
CiPaw.04G135700 Carya illinoinensis HOM05D004190 ORTHO05D004692 4.4e-15 86.3 167 32.9
Gohir.D13G232900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 4.4e-15 86.3 190 30.5
Duzib150G1353 Durio zibethinus HOM05D004190 ORTHO05D004692 5.8e-15 85.9 134 35.8
PGR119G1862 Punica granatum HOM05D004190 ORTHO05D004692 7.6e-15 85.5 119 37.8
MD11G1107500 Malus domestica HOM05D004190 ORTHO05D004692 1.3e-14 84.7 120 36.7
Potri.009G031100 Populus trichocarpa HOM05D004190 ORTHO05D004692 1.3e-14 84.7 177 29.9
FvH4_3g36180 Fragaria vesca HOM05D004190 ORTHO05D004692 2.2e-14 84.0 119 38.7
CDE02G2475 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 3.8e-14 83.2 209 29.2
COL.COLO4_18512 Corchorus olitorius HOM05D004190 ORTHO05D004692 3.8e-14 83.2 125 36.0
TWI31G0561 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 6.4e-14 82.4 130 33.8
FAN11G2049 Fragaria x ananassa HOM05D004190 ORTHO05D004692 8.4e-14 82.0 119 37.8
FAN16G2398 Fragaria x ananassa HOM05D004190 ORTHO05D004692 1.1e-13 81.6 119 37.8
MD03G1092700 Malus domestica HOM05D004190 ORTHO05D004692 1.1e-13 81.6 120 31.7
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 1.4e-13 81.3 121 35.5
RcHm_v2.0_Chr5g0064931 Rosa chinensis HOM05D004190 ORTHO05D004692 1.4e-13 81.3 119 37.8
Cc01_g08740 Coffea canephora HOM05D004190 ORTHO05D004692 1.9e-13 80.9 176 33.5
Dinv22804 Davidia involucrata HOM05D004190 ORTHO05D004692 1.9e-13 80.9 191 31.4
Duzib170G0106 Durio zibethinus HOM05D004190 ORTHO05D004692 1.9e-13 80.9 135 35.6
Sopen00g012630 Solanum pennellii HOM05D004190 ORTHO05D004692 1.9e-13 80.9 84 48.8
Sopen01g043570 Solanum pennellii HOM05D004190 ORTHO05D004692 1.9e-13 80.9 84 48.8
Thecc.09G321100 Theobroma cacao HOM05D004190 ORTHO05D004692 1.9e-13 80.9 125 33.6
Cpa.g.sc81.141 Carica papaya HOM05D004190 ORTHO05D004692 2.4e-13 80.5 131 33.6
Nn2g13344 Nelumbo nucifera HOM05D004190 ORTHO05D004692 2.4e-13 80.5 131 34.4
FAN25G3130 Fragaria x ananassa HOM05D004190 ORTHO05D004692 3.2e-13 80.1 119 37.0
Gorai.009G099200 Gossypium raimondii HOM05D004190 ORTHO05D004692 3.2e-13 80.1 125 33.6
CiPaw.13G093900 Carya illinoinensis HOM05D004190 ORTHO05D004692 4.2e-13 79.7 121 35.5
Solyc10g049990.1 Solanum lycopersicum HOM05D004190 ORTHO05D018124 4.2e-13 79.7 156 37.8
Gohir.A05G095600 Gossypium hirsutum HOM05D004190 ORTHO05D004692 5.4e-13 79.3 125 33.6
BcaB01g04586 Brassica carinata HOM05D004190 ORTHO05D004692 7.1e-13 79.0 144 37.5
Gohir.D05G095900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 7.1e-13 79.0 125 32.8
THA.LOC104814877 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 7.1e-13 79.0 125 34.4
TAR623G1294 Trochodendron aralioides HOM05D004190 ORTHO05D004692 7.1e-13 79.0 213 28.2
FAN21G2646 Fragaria x ananassa HOM05D004190 ORTHO05D004692 9.2e-13 78.6 119 37.0
BraA10t43742Z Brassica rapa HOM05D000173 ORTHO05D000316 2.1e-12 77.4 129 31.8
BcaC01g06528 Brassica carinata HOM05D004190 ORTHO05D004692 4.6e-12 76.3 126 33.3
TWI79G1380 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 4.6e-12 76.3 157 29.9
Sp6g21060 Schrenkiella parvula HOM05D004190 ORTHO05D004692 6.0e-12 75.9 122 32.0
MSTRG.17696 Avicennia marina HOM05D004190 ORTHO05D004692 1.0e-11 75.1 119 36.1
BraA03t10485Z Brassica rapa HOM05D004190 ORTHO05D004692 1.0e-11 75.1 140 30.0
Thhalv10014530m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 1.0e-11 75.1 125 30.4
SalBow3G0001 Salvia bowleyana HOM05D004190 ORTHO05D004692 1.3e-11 74.7 118 37.3
PGSC0003DMG400024416 Solanum tuberosum HOM05D004190 ORTHO05D018124 1.3e-11 74.7 142 36.6
Aqoxy4G02933 Aquilegia oxysepala HOM05D004190 ORTHO05D004692 2.3e-11 73.9 128 33.6
Dinv08914 Davidia involucrata HOM05D004190 ORTHO05D004692 2.3e-11 73.9 111 37.8
Hma1.2p1_0220F.1_g093040 Hydrangea macrophylla HOM05D004190 ORTHO05D004692 2.3e-11 73.9 95 36.8
Hma1.2p1_1227F.1_g268580 Hydrangea macrophylla HOM05D004190 ORTHO05D004692 2.3e-11 73.9 95 36.8
Ciclev10029152m.g Citrus clementina HOM05D004190 ORTHO05D004692 3.9e-11 73.2 182 28.6
C03p13790 Brassica napus HOM05D004190 ORTHO05D004692 5.1e-11 72.8 130 39.2
BcaC03g14013 Brassica carinata HOM05D004190 ORTHO05D004692 6.6e-11 72.4 120 32.5
BolC2t07349H Brassica oleracea HOM05D004190 ORTHO05D004692 6.6e-11 72.4 120 32.5
BcaB01g04590 Brassica carinata HOM05D004190 ORTHO05D004692 8.7e-11 72.0 124 41.1
C02p12490 Brassica napus HOM05D000173 ORTHO05D000316 8.7e-11 72.0 120 32.5
BolC3t13827H Brassica oleracea HOM05D004190 ORTHO05D004692 8.7e-11 72.0 129 36.4
Thhalv10002683m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 8.7e-11 72.0 150 32.0
AT3G46580 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 1.1e-10 71.6 127 30.7
BcaC04g19780 Brassica carinata HOM05D004190 ORTHO05D004692 1.1e-10 71.6 130 31.5
C09p51780 Brassica napus HOM05D000173 ORTHO05D004692 1.1e-10 71.6 130 31.5
BolC9t58040H Brassica oleracea HOM05D000173 ORTHO05D004692 1.1e-10 71.6 130 31.5
Aa31LG4G15580 Aethionema arabicum HOM05D004190 ORTHO05D004692 1.5e-10 71.2 128 33.6
CANSAT54G1895 Cannabis sativa HOM05D004190 ORTHO05D004692 1.5e-10 71.2 224 27.7
PGSC0003DMG400042312 Solanum tuberosum HOM05D004190 ORTHO05D018124 1.5e-10 71.2 166 34.3
AL5G25450 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 2.5e-10 70.5 126 29.4
Sc24g0002450 Simmondsia chinensis HOM05D004190 ORTHO05D004692 2.5e-10 70.5 147 32.7
PGSC0003DMG400044882 Solanum tuberosum HOM05D004190 ORTHO05D004692 2.5e-10 70.5 199 33.2
Sopen10g021100 Solanum pennellii HOM05D004190 ORTHO05D018124 4.3e-10 69.7 170 34.7
BraA02t05794Z Brassica rapa HOM05D004190 ORTHO05D004692 9.6e-10 68.6 129 29.5
Migut.N02470 Erythranthe guttata HOM05D004190 ORTHO05D004692 1.3e-09 68.2 150 32.0
Eucgr.J02050 Eucalyptus grandis HOM05D004190 ORTHO05D004692 2.1e-09 67.4 171 28.1
GSVIVG01024954001 Vitis vinifera HOM05D004190 ORTHO05D004692 2.1e-09 67.4 125 32.0
Carub.0008s2005 Capsella rubella HOM05D004190 ORTHO05D004692 3.6e-09 66.6 119 31.1
CARHR285750 Cardamine hirsuta HOM05D004190 ORTHO05D004692 3.6e-09 66.6 126 28.6
Sc21g0005810 Simmondsia chinensis HOM05D004190 ORTHO05D004692 3.6e-09 66.6 121 32.2
BcaB05g22507 Brassica carinata HOM05D004190 ORTHO05D004692 4.8e-09 66.2 140 27.9
Hund04953 Selenicereus undatus HOM05D004190 ORTHO05D004692 4.8e-09 66.2 125 32.8
PGSC0003DMG400026343 Solanum tuberosum HOM05D004190 ORTHO05D004692 4.8e-09 66.2 61 54.1
unitig_8.g3659 Utricularia gibba HOM05D004190 ORTHO05D004692 6.2e-09 65.9 76 44.7
Aa31sc23G430 Aethionema arabicum HOM05D004190 ORTHO05D004692 8.1e-09 65.5 167 26.9
ATR0559G266 Amborella trichopoda HOM05D004190 ORTHO05D004692 8.1e-09 65.5 132 31.1
Haze_24100 Corylus avellana HOM05D004190 ORTHO05D004692 8.1e-09 65.5 107 31.8
BcaB08g36263 Brassica carinata HOM05D004190 ORTHO05D004692 1.4e-08 64.7 60 46.7
MBI05_g22031_MAGBIO Magnolia biondii HOM05D004190 ORTHO05D004692 1.4e-08 64.7 227 27.8
Carub.0005s1285 Capsella rubella HOM05D004190 ORTHO05D004692 1.8e-08 64.3 122 29.5
Cfa011508 Carpinus fangiana HOM05D004190 ORTHO05D004692 1.8e-08 64.3 68 44.1
SHI05942 Sapria himalayana HOM05D004190 ORTHO05D004692 3.1e-08 63.5 136 32.4
BraA01t02543Z Brassica rapa HOM05D004190 ORTHO05D004692 5.3e-08 62.8 128 32.8
AL8G35820 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 6.9e-08 62.4 124 26.6
AT5G59380 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 2.0e-07 60.8 122 28.7
BcaC09g49754 Brassica carinata HOM05D004190 ORTHO05D004692 2.6e-07 60.5 128 32.0
C01p33300 Brassica napus HOM05D004190 ORTHO05D004692 2.6e-07 60.5 128 32.0
BolC1t03263H Brassica oleracea HOM05D004190 ORTHO05D004692 2.6e-07 60.5 128 32.0
SEGI_09707 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 3.4e-07 60.1 138 26.8
Sp5g15120 Schrenkiella parvula HOM05D004190 ORTHO05D004692 4.4e-07 59.7 124 30.6
CDE08G1317 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 7.6e-07 58.9 102 34.3
Sabra09G0021900 Salix brachista HOM05D004190 ORTHO05D004692 7.6e-07 58.9 184 24.5
SEGI_04263 Sequoiadendron giganteum HOM05D016141 ORTHO05D004692 7.6e-07 58.9 100 31.0
DCAR_002216 Daucus carota HOM05D002742 ORTHO05D002959 9.9e-07 58.5 105 33.3
Duzib093G1405 Durio zibethinus HOM05D006496 ORTHO05D004692 1.7e-06 57.8 144 28.5
Potri.001G240100 Populus trichocarpa HOM05D004190 ORTHO05D004692 1.7e-06 57.8 85 36.5
TWI60G1121 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 1.7e-06 57.8 69 44.9
FvH4_6g13651 Fragaria vesca HOM05D022761 ORTHO05D022494 2.9e-06 57.0 118 30.5
FAN09G4791 Fragaria x ananassa HOM05D004190 ORTHO05D022494 2.9e-06 57.0 118 30.5
FAN14G3185 Fragaria x ananassa HOM05D022761 ORTHO05D022494 2.9e-06 57.0 118 30.5
PGSC0003DMG400024415 Solanum tuberosum HOM05D004190 ORTHO05D018124 2.9e-06 57.0 119 35.3
PSO339G5527 Papaver somniferum HOM05D066660 ORTHO05D004692 3.8e-06 56.6 55 41.8
PSO384G5141 Papaver somniferum HOM05D066660 ORTHO05D004692 3.8e-06 56.6 55 41.8
Rhsim13G0195100 Rhododendron simsii HOM05D004190 ORTHO05D004692 4.9e-06 56.2 95 32.6
BcaB05g23553 Brassica carinata HOM05D004190 ORTHO05D004692 6.4e-06 55.8 158 33.5
CAN.G1062.1 Capsicum annuum HOM05D000739 ORTHO05D115208 6.4e-06 55.8 48 52.1
SEGI_27595 Sequoiadendron giganteum HOM05D027190 ORTHO05D004692 6.4e-06 55.8 164 26.2


User provided reference genes

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