Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G157.24 Capsicum annuum HOM05D005984 ORTHO05D007754 1.6e-233 812.4 401 100.0
Sopen02g003530 Solanum pennellii HOM05D005984 ORTHO05D007754 5.6e-215 750.7 396 94.2
PGSC0003DMG400002324 Solanum tuberosum HOM05D005984 ORTHO05D007754 3.6e-214 748.0 394 93.7
Solyc02g014150.4 Solanum lycopersicum HOM05D005984 ORTHO05D007754 3.5e-201 704.9 373 93.6
PSO063G6567 Papaver somniferum HOM05D005984 ORTHO05D007754 3.3e-183 645.2 363 85.7
TWI53G1952 Tripterygium wilfordii HOM05D005984 ORTHO05D007754 4.3e-183 644.8 398 81.2
PSO782G0234 Papaver somniferum HOM05D005984 ORTHO05D007754 7.4e-183 644.0 363 85.4
TAR629G1998 Trochodendron aralioides HOM05D005984 ORTHO05D007754 8.2e-182 640.6 366 86.1
Sed0006813 Sechium edule HOM05D005984 ORTHO05D007754 3.1e-181 638.6 365 84.1
Thecc.02G160200 Theobroma cacao HOM05D005984 ORTHO05D007754 3.1e-181 638.6 399 79.2
Cpa.g.sc44.38 Carica papaya HOM05D005984 ORTHO05D007754 5.3e-181 637.9 357 86.8
ClCG09G004540 Citrullus lanatus HOM05D005984 ORTHO05D007754 6.9e-181 637.5 361 85.9
VMungo1127G1047 Vigna mungo HOM05D005984 ORTHO05D007754 9.0e-181 637.1 359 85.8
Glyma.11G100800 Glycine max HOM05D005984 ORTHO05D007754 1.2e-180 636.7 359 86.4
GSVIVG01012045001 Vitis vinifera HOM05D005984 ORTHO05D007754 2.6e-180 635.6 359 85.0
CsaV3_7G030600 Cucumis sativus L. HOM05D005984 ORTHO05D007754 3.4e-180 635.2 391 81.1
PGR044G2022 Punica granatum HOM05D005984 ORTHO05D007754 3.4e-180 635.2 367 83.7
DCAR_002576 Daucus carota HOM05D005984 ORTHO05D007754 1.0e-179 633.6 375 82.7
Gohir.A03G164600 Gossypium hirsutum HOM05D005984 ORTHO05D007754 1.0e-179 633.6 376 82.7
VMungo0647G2306 Vigna mungo HOM05D005984 ORTHO05D007754 1.3e-179 633.3 359 85.5
Gohir.D02G187800 Gossypium hirsutum HOM05D005984 ORTHO05D007754 5.0e-179 631.3 413 77.5
Gorai.005G210500 Gossypium raimondii HOM05D005984 ORTHO05D007754 5.0e-179 631.3 413 77.5
Zm00001eb271820 Zea mays HOM05D005984 ORTHO05D007754 5.0e-179 631.3 394 78.9
MSTRG.431 Avicennia marina HOM05D005984 ORTHO05D007754 8.5e-179 630.6 360 85.3
Actinidia38413 Actinidia chinensis HOM05D005984 ORTHO05D007754 1.4e-178 629.8 355 86.2
Actinidia13710 Actinidia chinensis HOM05D005984 ORTHO05D007754 1.9e-178 629.4 384 81.0
Aqoxy3G04258 Aquilegia oxysepala HOM05D005984 ORTHO05D007754 2.5e-178 629.0 376 81.4
Cfa008738 Carpinus fangiana HOM05D005984 ORTHO05D007754 2.5e-178 629.0 412 76.5
Glyma.12G026900 Glycine max HOM05D005984 ORTHO05D007754 2.5e-178 629.0 410 77.8
THA.LOC104800911 Tarenaya hassleriana HOM05D005984 ORTHO05D007754 3.2e-178 628.6 360 85.6
Hma1.2p1_0122F.1_g057600 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 4.2e-178 628.2 412 77.4
CiPaw.06G060100 Carya illinoinensis HOM05D005984 ORTHO05D007754 5.5e-178 627.9 358 84.9
Phvul.011G029800 Phaseolus vulgaris HOM05D005984 ORTHO05D007754 7.2e-178 627.5 402 77.6
TPR.G32343 Trifolium pratense HOM05D005984 ORTHO05D007754 1.2e-177 626.7 359 85.0
Cc11_g02280 Coffea canephora HOM05D005984 ORTHO05D007754 1.6e-177 626.3 388 80.9
MD13G1005900 Malus domestica HOM05D005984 ORTHO05D007754 1.6e-177 626.3 412 77.2
Psat7g177360 Pisum sativum HOM05D005984 ORTHO05D007754 1.6e-177 626.3 359 84.7
arahy.Tifrunner.gnm1.ann1.0C6YUW Arachis hypogaea HOM05D005984 ORTHO05D007754 3.6e-177 625.2 382 80.9
Sabra07G0060100 Salix brachista HOM05D005984 ORTHO05D007754 6.1e-177 624.4 386 79.3
Medtr4g075040 Medicago truncatula HOM05D005984 ORTHO05D007754 7.9e-177 624.0 405 77.8
Os06g0729650 Oryza sativa ssp. japonica HOM05D005984 ORTHO05D007754 7.9e-177 624.0 382 81.2
Duzib052G0297 Durio zibethinus HOM05D005984 ORTHO05D007754 2.3e-176 622.5 358 83.5
ATR0618G114 Amborella trichopoda HOM05D005984 ORTHO05D007754 3.0e-176 622.1 378 82.3
arahy.Tifrunner.gnm1.ann1.B6F48P Arachis hypogaea HOM05D005984 ORTHO05D007754 3.9e-176 621.7 382 80.6
Lj3A850G95 Lonicera japonica HOM05D005984 ORTHO05D007754 3.9e-176 621.7 425 75.5
CSS0012805 Camellia sinensis var. sinensis HOM05D005984 ORTHO05D007754 8.8e-176 620.5 407 77.1
AT5G23120 Arabidopsis thaliana HOM05D005984 ORTHO05D007754 1.1e-175 620.2 358 84.4
BolC7t44963H Brassica oleracea HOM05D005984 ORTHO05D007754 2.0e-175 619.4 394 78.2
Potri.007G071300 Populus trichocarpa HOM05D005984 ORTHO05D007754 3.3e-175 618.6 386 79.0
unitig_8.g2892 Utricularia gibba HOM05D005984 ORTHO05D007754 3.3e-175 618.6 387 80.4
A03p46390 Brassica napus HOM05D005984 ORTHO05D007754 4.3e-175 618.2 360 83.6
BraA03t13765Z Brassica rapa HOM05D005984 ORTHO05D007754 4.3e-175 618.2 360 83.6
C07p44410 Brassica napus HOM05D005984 ORTHO05D007754 5.7e-175 617.8 394 77.9
COL.COLO4_19602 Corchorus olitorius HOM05D005984 ORTHO05D007754 9.7e-175 617.1 445 71.9
HPP92_012878 Vanilla planifolia HOM05D005984 ORTHO05D007754 1.3e-174 616.7 362 82.9
Ca_19021_v3 Cicer arietinum L. HOM05D005984 ORTHO05D007754 1.7e-174 616.3 381 80.6
Carub.0006s2091 Capsella rubella HOM05D005984 ORTHO05D007754 2.8e-174 615.5 360 82.8
Nitab4.5_0000133g0050 Nicotiana tabacum HOM05D005984 ORTHO05D007754 2.8e-174 615.5 542 62.7
Thhalv10004338m.g Eutrema salsugineum HOM05D005984 ORTHO05D007754 3.7e-174 615.1 358 83.2
EL10Ac9g22946 Beta vulgaris HOM05D005984 ORTHO05D007754 1.8e-173 612.8 414 74.6
Nitab4.5_0006277g0020 Nicotiana tabacum HOM05D005984 ORTHO05D007754 9.1e-173 610.5 574 60.5
Lsat_1_v5_gn_3_35480 Lactuca sativa HOM05D005984 ORTHO05D007754 3.4e-172 608.6 417 75.3
Rhsim04G0167300 Rhododendron simsii HOM05D005984 ORTHO05D007754 4.5e-172 608.2 380 79.5
Haze_11755 Corylus avellana HOM05D005984 ORTHO05D007754 2.5e-170 602.4 424 72.2
Hund08579 Selenicereus undatus HOM05D005984 ORTHO05D007754 4.2e-170 601.7 423 74.2
MELO3C023596.2 Cucumis melo HOM05D005984 ORTHO05D007754 1.0e-168 597.0 378 78.8
ECA246G1868 Erigeron canadensis HOM05D005984 ORTHO05D007754 3.9e-168 595.1 365 80.0
Nn3g18651 Nelumbo nucifera HOM05D005984 ORTHO05D007754 8.8e-168 594.0 385 78.4
FvH4_4g36890 Fragaria vesca HOM05D005984 ORTHO05D007754 1.5e-167 593.2 398 74.6
Migut.E00699 Erythranthe guttata HOM05D005984 ORTHO05D007754 2.6e-167 592.4 402 76.1
FAN12G1392 Fragaria x ananassa HOM05D005984 ORTHO05D007754 2.6e-167 592.4 400 75.0
vmacro08597 Vaccinium macrocarpon HOM05D005984 ORTHO05D007754 3.3e-167 592.0 364 80.8
CDE07G0658 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 5.7e-167 591.3 363 79.9
AUR62017696 Chenopodium quinoa HOM05D005984 ORTHO05D007754 5.7e-167 591.3 359 81.9
Ciclev10031672m.g Citrus clementina HOM05D005984 ORTHO05D007754 7.4e-167 590.9 382 76.7
Eucgr.J00865 Eucalyptus grandis HOM05D005984 ORTHO05D007754 2.8e-166 589.0 362 80.4
Sed0023953 Sechium edule HOM05D005984 ORTHO05D007754 4.8e-166 588.2 396 75.5
CANSAT56G2432 Cannabis sativa HOM05D005984 ORTHO05D007754 8.2e-166 587.4 394 75.1
Dinv11718 Davidia involucrata HOM05D005984 ORTHO05D007754 1.4e-165 586.6 364 79.9
Lj3g0024041 Lotus japonicus HOM05D005984 ORTHO05D007754 3.1e-165 585.5 359 80.2
Atru.chr11.1117 Acer truncatum HOM05D005984 ORTHO05D007754 1.2e-164 583.6 398 74.4
Sc10g0006780 Simmondsia chinensis HOM05D005984 ORTHO05D007754 1.2e-164 583.6 335 84.8
MD16G1002000 Malus domestica HOM05D005984 ORTHO05D007754 1.6e-164 583.2 408 73.5
RcHm_v2.0_Chr4g0446671 Rosa chinensis HOM05D005984 ORTHO05D007754 2.0e-164 582.8 400 74.0
Lalb_Chr03g0024761 Lupinus albus HOM05D005984 ORTHO05D007754 2.6e-164 582.4 385 75.8
Prupe.1G347100 Prunus persica HOM05D005984 ORTHO05D007754 4.5e-164 581.6 414 72.7
QL03p045967 Quercus lobata HOM05D005984 ORTHO05D007754 4.5e-164 581.6 500 63.2
AUR62015232 Chenopodium quinoa HOM05D005984 ORTHO05D007754 7.7e-164 580.9 328 86.0
AUR62015234 Chenopodium quinoa HOM05D005984 ORTHO05D007754 7.7e-164 580.9 328 86.0
Oeu026903.3 Olea europaea HOM05D005984 ORTHO05D007754 1.3e-163 580.1 416 72.4
FAN07G1379 Fragaria x ananassa HOM05D005984 ORTHO05D007754 5.0e-163 578.2 426 70.2
Manes.04G064200 Manihot esculenta HOM05D005984 ORTHO05D007754 6.5e-163 577.8 401 73.3
SGA_v2.0_scaffold88G27230 Striga asiatica HOM05D005984 ORTHO05D007754 1.5e-162 576.6 380 77.6
CARHR190410 Cardamine hirsuta HOM05D005984 ORTHO05D007754 1.6e-161 573.2 362 78.7
Manes.11G108100 Manihot esculenta HOM05D005984 ORTHO05D007754 4.7e-161 571.6 401 74.3
AL6G34310 Arabidopsis lyrata HOM05D005984 ORTHO05D007754 6.1e-161 571.2 391 74.2
Sp2g24000 Schrenkiella parvula HOM05D005984 ORTHO05D007754 3.0e-160 568.9 360 78.3
Aa31LG11G2610 Aethionema arabicum HOM05D005984 ORTHO05D007754 5.2e-160 568.2 418 70.3
HanXRQChr17g0544921 Helianthus annuus HOM05D005984 ORTHO05D007754 5.7e-159 564.7 382 75.1
Ah.01g001560 Amaranthus hybridus HOM05D005984 ORTHO05D007754 1.3e-158 563.5 352 79.3
SMO347G0352 Selaginella moellendorffii HOM05D005984 ORTHO05D007754 2.8e-158 562.4 356 76.1
HanXRQChr06g0171511 Helianthus annuus HOM05D005984 ORTHO05D007754 2.9e-155 552.4 347 78.4
SalBow2G1456 Salvia bowleyana HOM05D005984 ORTHO05D007754 1.5e-154 550.1 497 61.6
Pp3c15_7930 Physcomitrium patens HOM05D005984 ORTHO05D007754 8.5e-147 524.2 360 71.9
Mapoly0020s0149 Marchantia polymorpha HOM05D005984 ORTHO05D007754 1.1e-146 523.9 362 68.8
Peaxi162Scf00363g00317 Petunia axillaris HOM05D005984 ORTHO05D007754 4.7e-145 518.5 524 58.6
Pp3c9_10350 Physcomitrium patens HOM05D005984 ORTHO05D007754 9.8e-143 510.8 360 70.6
CDE04G0799 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 1.6e-137 493.4 363 70.2
AagrBONN_evm.TU.Sc2ySwM_369.365 Anthoceros agrestis HOM05D005984 ORTHO05D007754 1.6e-121 440.3 337 66.2
FAN17G0887 Fragaria x ananassa HOM05D005984 ORTHO05D007754 5.2e-120 435.3 428 57.5
CBR_g11122 Chara braunii HOM05D005984 ORTHO05D007754 6.8e-120 434.9 338 63.6
Hma1.2p1_0122F.1_g057590 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 3.8e-110 402.5 209 90.4
MCO05G498 Micromonas commoda HOM05D005984 ORTHO05D007754 1.2e-108 397.5 365 54.2
Cre06.g273700 Chlamydomonas reinhardtii HOM05D005984 ORTHO05D007754 1.7e-107 393.7 384 53.4
Dinv01185 Davidia involucrata HOM05D005984 ORTHO05D007754 5.1e-107 392.1 203 91.6
PRCOL_00000217 Prasinoderma coloniale HOM05D005984 ORTHO05D007754 2.5e-77 293.5 292 50.3
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 3.6e-60 236.5 372 38.2
SEGI_34707 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 2.4e-56 223.8 122 84.4
MD15G1106700 Malus domestica HOM05D005984 ORTHO05D007754 5.3e-56 222.6 114 91.2
C09p07860 Brassica napus HOM05D005984 ORTHO05D007754 4.8e-49 199.5 181 60.8
MD00G1043400 Malus domestica HOM05D005984 ORTHO05D007754 8.8e-43 178.7 111 80.2
BcaB04g19886 Brassica carinata HOM05D005984 ORTHO05D007754 7.7e-39 165.6 211 48.8
C09p07870 Brassica napus HOM05D005984 ORTHO05D042888 3.1e-32 143.7 103 68.9
HanXRQChr10g0318441 Helianthus annuus HOM05D005984 ORTHO05D007754 1.2e-28 131.7 69 85.5
AUR62024854 Chenopodium quinoa HOM05D005984 ORTHO05D007754 1.2e-26 125.2 73 84.9
arahy.Tifrunner.gnm1.ann1.25R2K9 Arachis hypogaea HOM05D005984 ORTHO05D014444 6.3e-25 119.4 85 69.4
arahy.Tifrunner.gnm1.ann1.B9R6EW Arachis hypogaea HOM05D005984 ORTHO05D014444 7.0e-24 115.9 83 68.7
BolC9t53702H Brassica oleracea HOM05D005984 ORTHO05D042888 2.5e-21 107.5 80 67.5
SEGI_27749 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 3.4e-18 97.1 53 81.1
MBI03_g15323_MAGBIO Magnolia biondii HOM05D002934 ORTHO05D003937 1.0e-14 85.5 43 90.7
Zm00001eb227280 Zea mays HOM05D005984 ORTHO05D007754 1.1e-13 82.0 62 64.5
Glyma.01G000174 Glycine max HOM05D036214 ORTHO05D007754 6.2e-12 76.3 43 83.7
Glyma.06G237300 Glycine max HOM05D005984 ORTHO05D007754 7.5e-10 69.3 70 57.1
Pp3c24_8290 Physcomitrium patens HOM05D013586 ORTHO05D011470 1.7e-09 68.2 38 76.3
SGA_v2.0_scaffold57G20111 Striga asiatica HOM05D005984 ORTHO05D402503 9.2e-08 62.4 39 71.8
AUR62043071 Chenopodium quinoa HOM05D003339 ORTHO05D003847 6.0e-07 59.7 72 47.2


User provided reference genes

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