Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1537.14 Capsicum annuum HOM05D003032 ORTHO05D003456 1.1e-43 179.5 83 100.0
CAN.G1537.16 Capsicum annuum HOM05D003032 ORTHO05D003456 2.6e-34 148.3 88 81.8
Solyc03g005930.3 Solanum lycopersicum HOM05D003032 ORTHO05D003456 2.7e-31 138.3 88 73.9
Sopen03g001940 Solanum pennellii HOM05D003032 ORTHO05D003456 2.7e-31 138.3 88 73.9
Peaxi162Scf00047g00922 Petunia axillaris HOM05D003032 ORTHO05D003456 7.4e-29 130.2 88 71.6
Nitab4.5_0007204g0010 Nicotiana tabacum HOM05D003032 ORTHO05D003456 1.7e-28 129.0 86 72.1
Peaxi162Scf01055g00115 Petunia axillaris HOM05D003032 ORTHO05D003456 2.8e-28 128.3 88 70.5
Nitab4.5_0002507g0070 Nicotiana tabacum HOM05D003032 ORTHO05D003456 2.4e-27 125.2 88 71.6
Nitab4.5_0000982g0010 Nicotiana tabacum HOM05D003032 ORTHO05D003456 5.3e-27 124.0 88 70.5
Sopen02g020740 Solanum pennellii HOM05D003032 ORTHO05D003456 2.6e-26 121.7 86 68.6
Solyc02g071750.3 Solanum lycopersicum HOM05D003032 ORTHO05D003456 4.5e-26 120.9 86 68.6
Nitab4.5_0005138g0080 Nicotiana tabacum HOM05D003032 ORTHO05D003456 5.9e-26 120.6 88 68.2
PGSC0003DMG400028444 Solanum tuberosum HOM05D003032 ORTHO05D003456 1.3e-25 119.4 86 67.4
Peaxi162Scf00022g00037 Petunia axillaris HOM05D003032 ORTHO05D003456 7.2e-24 113.6 86 61.6
Lsat_1_v5_gn_7_26960 Lactuca sativa HOM05D003032 ORTHO05D003456 6.1e-23 110.5 88 63.6
SGA_v2.0_scaffold16G07719 Striga asiatica HOM05D003032 ORTHO05D003456 1.0e-22 109.8 89 62.9
MSTRG.16186 Avicennia marina HOM05D003032 ORTHO05D003456 1.8e-22 109.0 89 64.0
ECA236G0712 Erigeron canadensis HOM05D003032 ORTHO05D003456 1.8e-22 109.0 88 61.4
Dinv12722 Davidia involucrata HOM05D003032 ORTHO05D003456 3.0e-22 108.2 89 61.8
SalBow8G3374 Salvia bowleyana HOM05D003032 ORTHO05D003456 5.2e-22 107.5 88 62.5
Migut.M00987 Erythranthe guttata HOM05D003032 ORTHO05D003456 2.6e-21 105.1 88 61.4
Hma1.2p1_0336F.1_g129000 Hydrangea macrophylla HOM05D003032 ORTHO05D003456 2.6e-21 105.1 88 60.2
Lj1A1178T70 Lonicera japonica HOM05D003032 ORTHO05D003456 5.7e-21 104.0 88 59.1
Sed0025293 Sechium edule HOM05D003032 ORTHO05D003456 7.5e-21 103.6 88 51.1
Sed0013474 Sechium edule HOM05D003032 ORTHO05D003456 1.7e-20 102.4 88 55.7
Oeu004267.1 Olea europaea HOM05D003032 ORTHO05D003456 2.2e-20 102.1 88 59.1
Manes.17G061800 Manihot esculenta HOM05D003032 ORTHO05D003456 2.8e-20 101.7 85 57.6
Gorai.010G163600 Gossypium raimondii HOM05D003032 ORTHO05D003456 3.7e-20 101.3 88 56.8
CAN.G411.4 Capsicum annuum HOM05D003032 ORTHO05D003456 4.8e-20 100.9 86 59.3
QL05p052148 Quercus lobata HOM05D003032 ORTHO05D003456 6.3e-20 100.5 89 56.2
Thecc.06G161100 Theobroma cacao HOM05D003032 ORTHO05D003456 6.3e-20 100.5 88 58.0
Duzib160G0697 Durio zibethinus HOM05D003032 ORTHO05D003456 8.2e-20 100.1 89 58.4
ClCG01G024060 Citrullus lanatus HOM05D003032 ORTHO05D003456 1.1e-19 99.8 89 56.2
Gohir.D06G140200 Gossypium hirsutum HOM05D003032 ORTHO05D003456 1.1e-19 99.8 88 55.7
HanXRQChr04g0112231 Helianthus annuus HOM05D003032 ORTHO05D003456 1.1e-19 99.8 87 58.6
vmacro10933 Vaccinium macrocarpon HOM05D003032 ORTHO05D003456 1.4e-19 99.4 88 58.0
CANSAT35G0490 Cannabis sativa HOM05D003032 ORTHO05D003456 2.4e-19 98.6 88 54.5
Ciclev10016833m.g Citrus clementina HOM05D003032 ORTHO05D003456 2.4e-19 98.6 88 53.4
arahy.Tifrunner.gnm1.ann1.H1W4M4 Arachis hypogaea HOM05D003032 ORTHO05D003456 4.1e-19 97.8 85 57.6
arahy.Tifrunner.gnm1.ann1.KAT3SX Arachis hypogaea HOM05D003032 ORTHO05D003456 4.1e-19 97.8 85 57.6
TWI09G1589 Tripterygium wilfordii HOM05D003032 ORTHO05D003456 5.3e-19 97.4 87 51.7
Gohir.A06G122300 Gossypium hirsutum HOM05D003032 ORTHO05D003456 7.0e-19 97.1 88 54.5
TWI73G0283 Tripterygium wilfordii HOM05D003032 ORTHO05D003456 7.0e-19 97.1 88 55.7
Oeu040942.1 Olea europaea HOM05D003032 ORTHO05D003456 9.1e-19 96.7 88 54.5
QL05p049864 Quercus lobata HOM05D003032 ORTHO05D003456 9.1e-19 96.7 89 55.1
Rhsim11G0122800 Rhododendron simsii HOM05D003032 ORTHO05D003456 9.1e-19 96.7 88 53.4
CiPaw.09G133700 Carya illinoinensis HOM05D003032 ORTHO05D003456 1.2e-18 96.3 88 53.4
MELO3C007183.2 Cucumis melo HOM05D003032 ORTHO05D003456 2.0e-18 95.5 89 55.1
PGR042G1118 Punica granatum HOM05D003032 ORTHO05D003456 2.0e-18 95.5 88 55.7
QL05p052162 Quercus lobata HOM05D003032 ORTHO05D003456 2.0e-18 95.5 88 52.3
Lalb_Chr07g0186181 Lupinus albus HOM05D003032 ORTHO05D003456 2.7e-18 95.1 89 56.2
Potri.011G075600 Populus trichocarpa HOM05D003032 ORTHO05D003456 2.7e-18 95.1 88 54.5
GSVIVG01021300001 Vitis vinifera HOM05D003032 ORTHO05D003456 4.5e-18 94.4 88 54.5
Cc02_g16060 Coffea canephora HOM05D003032 ORTHO05D003456 7.7e-18 93.6 85 55.3
COL.COLO4_22831 Corchorus olitorius HOM05D003032 ORTHO05D003456 7.7e-18 93.6 87 54.0
Sed0002907 Sechium edule HOM05D003032 ORTHO05D003456 7.7e-18 93.6 88 52.3
Sabra11G0062800 Salix brachista HOM05D003032 ORTHO05D003456 2.2e-17 92.0 88 52.3
DCAR_027964 Daucus carota HOM05D003032 ORTHO05D003456 2.9e-17 91.7 88 53.4
Medtr8g087820 Medicago truncatula HOM05D003032 ORTHO05D003456 2.9e-17 91.7 89 52.8
Eucgr.E02848 Eucalyptus grandis HOM05D003032 ORTHO05D003456 3.8e-17 91.3 85 55.3
CiPaw.09G133800 Carya illinoinensis HOM05D003032 ORTHO05D003456 5.0e-17 90.9 85 51.8
Ca_17879_v3 Cicer arietinum L. HOM05D003032 ORTHO05D003456 6.5e-17 90.5 89 52.8
CsaV3_6G051200 Cucumis sativus L. HOM05D003032 ORTHO05D003456 8.5e-17 90.1 88 51.1
Eucgr.E02852 Eucalyptus grandis HOM05D003032 ORTHO05D003456 1.1e-16 89.7 85 54.1
Lj4g0005760 Lotus japonicus HOM05D003032 ORTHO05D003456 1.5e-16 89.4 88 51.1
TPR.G6813 Trifolium pratense HOM05D003032 ORTHO05D003456 1.9e-16 89.0 88 48.9
Aqoxy1G01907 Aquilegia oxysepala HOM05D003032 ORTHO05D003456 2.5e-16 88.6 87 52.9
Cfa001065 Carpinus fangiana HOM05D003032 ORTHO05D003456 2.5e-16 88.6 88 50.0
PSO478G0172 Papaver somniferum HOM05D003032 ORTHO05D003456 2.5e-16 88.6 87 50.6
Prupe.4G070300 Prunus persica HOM05D003032 ORTHO05D003456 2.5e-16 88.6 87 49.4
Sabra16G0207000 Salix brachista HOM05D003032 ORTHO05D003456 4.2e-16 87.8 86 53.5
TAR624G1316 Trochodendron aralioides HOM05D003032 ORTHO05D003456 5.5e-16 87.4 88 52.3
Aqoxy1G01906 Aquilegia oxysepala HOM05D003032 ORTHO05D003456 7.2e-16 87.0 84 54.8
CANSAT35G1927 Cannabis sativa HOM05D003032 ORTHO05D003456 7.2e-16 87.0 82 51.2
Eucgr.E02849 Eucalyptus grandis HOM05D003032 ORTHO05D003456 9.4e-16 86.7 87 49.4
MD10G1271300 Malus domestica HOM05D003032 ORTHO05D003456 9.4e-16 86.7 88 50.0
Nn1g07285 Nelumbo nucifera HOM05D003032 ORTHO05D003456 1.2e-15 86.3 87 51.7
Potri.001G324500 Populus trichocarpa HOM05D003032 ORTHO05D003456 1.2e-15 86.3 85 52.9
Sc05g0006760 Simmondsia chinensis HOM05D003032 ORTHO05D003456 1.2e-15 86.3 80 52.5
Psat7g066960 Pisum sativum HOM05D003032 ORTHO05D003456 1.6e-15 85.9 89 51.7
AUR62027657 Chenopodium quinoa HOM05D003032 ORTHO05D003456 2.1e-15 85.5 87 50.6
Eucgr.E02853 Eucalyptus grandis HOM05D003032 ORTHO05D003456 2.1e-15 85.5 87 49.4
FAN21G3139 Fragaria x ananassa HOM05D003032 ORTHO05D003456 2.1e-15 85.5 88 50.0
FAN21G3669 Fragaria x ananassa HOM05D003032 ORTHO05D003456 2.1e-15 85.5 88 50.0
Glyma.05G163100 Glycine max HOM05D003032 ORTHO05D003456 2.1e-15 85.5 89 50.6
FAN25G2432 Fragaria x ananassa HOM05D003032 ORTHO05D003456 2.7e-15 85.1 88 48.9
Haze_05444 Corylus avellana HOM05D003032 ORTHO05D003456 3.6e-15 84.7 86 50.0
RcHm_v2.0_Chr5g0012411 Rosa chinensis HOM05D003032 ORTHO05D003456 3.6e-15 84.7 88 48.9
THA.LOC104798447 Tarenaya hassleriana HOM05D003032 ORTHO05D003456 4.7e-15 84.3 88 50.0
Potri.017G062400 Populus trichocarpa HOM05D003032 ORTHO05D003456 1.0e-14 83.2 85 51.8
FvH4_3g06750 Fragaria vesca HOM05D003032 ORTHO05D003456 1.4e-14 82.8 88 47.7
MD10G1271200 Malus domestica HOM05D003032 ORTHO05D003456 1.8e-14 82.4 87 50.6
Hund21459 Selenicereus undatus HOM05D003032 ORTHO05D003456 1.8e-14 82.4 87 49.4
EL10Ac8g19855 Beta vulgaris HOM05D003032 ORTHO05D003456 3.0e-14 81.6 84 46.4
unitig_748.g7642 Utricularia gibba HOM05D003032 ORTHO05D003456 3.0e-14 81.6 88 47.7
FAN11G3274 Fragaria x ananassa HOM05D003032 ORTHO05D003456 4.0e-14 81.3 88 47.7
Sc05g0006770 Simmondsia chinensis HOM05D003032 ORTHO05D003456 5.2e-14 80.9 84 50.0
Aa31LG6G1600 Aethionema arabicum HOM05D003032 ORTHO05D003456 3.4e-13 78.2 88 47.7
Phvul.002G243100 Phaseolus vulgaris HOM05D003032 ORTHO05D003456 3.4e-13 78.2 88 45.5
EL10Ac8g19853 Beta vulgaris HOM05D003032 ORTHO05D003456 7.5e-13 77.0 85 47.1
Os05g0517900 Oryza sativa ssp. japonica HOM05D003032 ORTHO05D003456 9.8e-13 76.6 84 48.8
Sp7g17640 Schrenkiella parvula HOM05D003032 ORTHO05D003456 9.8e-13 76.6 88 44.3
VMungo0251G3180 Vigna mungo HOM05D003032 ORTHO05D003456 1.3e-12 76.3 88 43.2
ATR0602G011 Amborella trichopoda HOM05D003032 ORTHO05D003456 1.7e-12 75.9 84 51.2
CDE02G4586 Ceratophyllum demersum HOM05D003032 ORTHO05D003456 1.7e-12 75.9 87 46.0
Sabra17G0056300 Salix brachista HOM05D003032 ORTHO05D003456 1.7e-12 75.9 100 44.0
BcaC09g51459 Brassica carinata HOM05D001953 ORTHO05D003456 2.2e-12 75.5 88 44.3
AL7G35230 Arabidopsis lyrata HOM05D003032 ORTHO05D003456 2.8e-12 75.1 88 44.3
A01p10950 Brassica napus HOM05D001953 ORTHO05D003456 3.7e-12 74.7 88 44.3
C01p12970 Brassica napus HOM05D001953 ORTHO05D003456 3.7e-12 74.7 88 44.3
BolC1t01271H Brassica oleracea HOM05D001953 ORTHO05D003456 3.7e-12 74.7 88 44.3
BcaNung04871 Brassica carinata HOM05D003032 ORTHO05D003456 8.3e-12 73.6 88 43.2
HPP92_006379 Vanilla planifolia HOM05D003032 ORTHO05D003456 1.1e-11 73.2 85 44.7
CSS0022910 Camellia sinensis var. sinensis HOM05D003032 ORTHO05D003456 1.8e-11 72.4 88 47.7
Thhalv10026371m.g Eutrema salsugineum HOM05D003032 ORTHO05D003456 3.1e-11 71.6 88 42.0
AUR62035858 Chenopodium quinoa HOM05D003032 ORTHO05D003456 4.1e-11 71.2 88 44.3
FAN16G0417 Fragaria x ananassa HOM05D003032 ORTHO05D003456 4.1e-11 71.2 88 44.3
Aqoxy4G00103 Aquilegia oxysepala HOM05D003032 ORTHO05D003456 5.4e-11 70.9 83 48.2
Thhalv10026969m.g Eutrema salsugineum HOM05D003032 ORTHO05D003456 5.4e-11 70.9 83 44.6
Oeu041756.1 Olea europaea HOM05D003032 ORTHO05D003456 7.0e-11 70.5 59 54.2
CARHR225820 Cardamine hirsuta HOM05D003032 ORTHO05D003456 9.1e-11 70.1 83 43.4
BcaB04g18509 Brassica carinata HOM05D003032 ORTHO05D003456 1.2e-10 69.7 78 47.4
Carub.0007s2226 Capsella rubella HOM05D003032 ORTHO05D003456 1.2e-10 69.7 88 40.9
EL10Ac8g19854 Beta vulgaris HOM05D003032 ORTHO05D003456 2.0e-10 68.9 84 41.7
Thhalv10026357m.g Eutrema salsugineum HOM05D003032 ORTHO05D003456 2.0e-10 68.9 88 43.2
CARHR225810 Cardamine hirsuta HOM05D003032 ORTHO05D003456 3.5e-10 68.2 83 44.6
AT4G18930 Arabidopsis thaliana HOM05D003032 ORTHO05D003456 7.7e-10 67.0 88 40.9
Carub.0007s2225 Capsella rubella HOM05D003032 ORTHO05D003456 1.0e-09 66.6 83 47.0
AT4G18940 Arabidopsis thaliana HOM05D003032 ORTHO05D003456 1.3e-09 66.2 85 43.5
Cpa.g.c47569 Carica papaya HOM05D003032 ORTHO05D003456 1.7e-09 65.9 71 46.5
BraA08t33399Z Brassica rapa HOM05D003032 ORTHO05D003456 2.9e-09 65.1 78 44.9
SEGI_13714 Sequoiadendron giganteum HOM05D003032 ORTHO05D003456 2.9e-09 65.1 84 44.0
AUR62027659 Chenopodium quinoa HOM05D003032 ORTHO05D003456 3.8e-09 64.7 74 44.6
A08p14060 Brassica napus HOM05D003032 ORTHO05D003456 5.0e-09 64.3 78 46.2
FvH4_5g09390 Fragaria vesca HOM05D003032 ORTHO05D003456 6.5e-09 63.9 94 36.2
BcaC01g00580 Brassica carinata HOM05D003032 ORTHO05D003456 8.5e-09 63.5 78 44.9
C03p81580 Brassica napus HOM05D003032 ORTHO05D003456 8.5e-09 63.5 78 44.9
BolC3t20428H Brassica oleracea HOM05D003032 ORTHO05D003456 8.5e-09 63.5 78 44.9
FAN18G1730 Fragaria x ananassa HOM05D003032 ORTHO05D003456 8.5e-09 63.5 94 36.2
RcHm_v2.0_Chr3g0456921 Rosa chinensis HOM05D003032 ORTHO05D003456 8.5e-09 63.5 70 41.4
Carub.0007s2224 Capsella rubella HOM05D003032 ORTHO05D003456 1.9e-08 62.4 85 43.5
Rhsim02G0150300 Rhododendron simsii HOM05D003032 ORTHO05D003456 7.2e-08 60.5 88 39.8
AUR62035853 Chenopodium quinoa HOM05D003032 ORTHO05D003456 1.6e-07 59.3 42 61.9
AUR62044133 Chenopodium quinoa HOM05D003032 ORTHO05D003456 1.6e-07 59.3 42 61.9
AUR62035859 Chenopodium quinoa HOM05D003032 ORTHO05D003456 3.6e-07 58.2 73 43.8
Prupe.6G318900 Prunus persica HOM05D003032 ORTHO05D003456 6.1e-07 57.4 66 45.5
FAN14G4334 Fragaria x ananassa HOM05D003032 ORTHO05D003456 8.0e-07 57.0 94 35.1
Cfa001066 Carpinus fangiana HOM05D003032 ORTHO05D003456 1.8e-06 55.8 42 59.5
FvH4_1g19120 Fragaria vesca HOM05D003032 ORTHO05D003456 1.8e-06 55.8 40 52.5
FvH4_6g07310 Fragaria vesca HOM05D003032 ORTHO05D003456 2.3e-06 55.5 81 35.8
RcHm_v2.0_Chr2g0111591 Rosa chinensis HOM05D003032 ORTHO05D003456 3.0e-06 55.1 91 34.1
RcHm_v2.0_Chr2g0111631 Rosa chinensis HOM05D003032 ORTHO05D003456 3.0e-06 55.1 91 34.1
RcHm_v2.0_Chr3g0461521 Rosa chinensis HOM05D003032 ORTHO05D003456 3.0e-06 55.1 95 34.7
FAN20G1368 Fragaria x ananassa HOM05D003032 ORTHO05D003456 4.0e-06 54.7 60 41.7
Mapoly0108s0044 Marchantia polymorpha HOM05D003032 ORTHO05D003456 4.0e-06 54.7 80 37.5
FvH4_6g07700 Fragaria vesca HOM05D003032 ORTHO05D003456 5.2e-06 54.3 94 34.0
RcHm_v2.0_Chr3g0458451 Rosa chinensis HOM05D003032 ORTHO05D003456 5.2e-06 54.3 72 37.5
FAN27G2259 Fragaria x ananassa HOM05D003032 ORTHO05D003456 8.8e-06 53.5 35 57.1


User provided reference genes

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