Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1444.6 Capsicum annuum HOM05D004433 ORTHO05D005251 0.0e+00 1154.8 593 100.0
Solyc08g066180.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 9.0e-294 1013.1 596 89.1
Sopen08g019860 Solanum pennellii HOM05D004433 ORTHO05D005251 1.2e-293 1012.7 596 88.9
Nitab4.5_0008242g0010 Nicotiana tabacum HOM05D004433 ORTHO05D005251 9.0e-278 959.9 593 85.7
Nitab4.5_0000318g0140 Nicotiana tabacum HOM05D004433 ORTHO05D005251 1.9e-267 925.6 594 83.5
Peaxi162Scf00699g00520 Petunia axillaris HOM05D004433 ORTHO05D005251 4.8e-255 884.4 593 79.1
MSTRG.25921 Avicennia marina HOM05D004433 ORTHO05D005251 7.2e-227 790.8 601 70.5
Migut.A00179 Erythranthe guttata HOM05D004433 ORTHO05D005251 3.6e-226 788.5 612 70.8
CSS0005257 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 1.0e-225 786.9 603 71.8
CSS0005508 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 1.0e-225 786.9 603 71.8
CANSAT21G1878 Cannabis sativa HOM05D004433 ORTHO05D005251 6.8e-225 784.3 606 69.5
TAR639G0002 Trochodendron aralioides HOM05D004433 ORTHO05D005251 1.2e-224 783.5 585 72.1
Dinv27935 Davidia involucrata HOM05D004433 ORTHO05D005251 1.3e-223 780.0 581 72.8
Oeu019243.1 Olea europaea HOM05D004433 ORTHO05D005251 1.3e-223 780.0 506 79.2
PGR031G3150 Punica granatum HOM05D004433 ORTHO05D005251 8.3e-223 777.3 595 70.1
CANSAT21G2561 Cannabis sativa HOM05D004433 ORTHO05D005251 1.6e-221 773.1 543 74.2
Actinidia14688 Actinidia chinensis HOM05D004433 ORTHO05D005251 5.9e-221 771.2 625 69.4
GSVIVG01035316001 Vitis vinifera HOM05D004433 ORTHO05D005251 1.7e-220 769.6 547 72.6
Eucgr.C00613 Eucalyptus grandis HOM05D004433 ORTHO05D005251 8.6e-220 767.3 556 72.1
HanXRQChr02g0047921 Helianthus annuus HOM05D004433 ORTHO05D005251 1.5e-219 766.5 604 69.0
RcHm_v2.0_Chr6g0306711 Rosa chinensis HOM05D004433 ORTHO05D005251 1.2e-218 763.5 579 70.3
FvH4_2g35220 Fragaria vesca HOM05D004433 ORTHO05D005251 2.1e-218 762.7 596 68.8
TWI34G1917 Tripterygium wilfordii HOM05D004433 ORTHO05D005251 3.6e-218 761.9 601 68.4
Nn8g39044 Nelumbo nucifera HOM05D004433 ORTHO05D005251 6.1e-218 761.1 591 71.2
Cfa013388 Carpinus fangiana HOM05D004433 ORTHO05D005251 1.0e-217 760.4 606 70.3
Ciclev10007803m.g Citrus clementina HOM05D004433 ORTHO05D005251 2.0e-216 756.1 606 68.6
Aqoxy5G01364 Aquilegia oxysepala HOM05D004433 ORTHO05D005251 4.4e-216 755.0 541 72.3
A04p20080 Brassica napus HOM05D004433 ORTHO05D005251 5.7e-216 754.6 598 68.1
arahy.Tifrunner.gnm1.ann1.AK26AV Arachis hypogaea HOM05D004433 ORTHO05D005251 7.5e-216 754.2 606 67.5
ECA233G5497 Erigeron canadensis HOM05D004433 ORTHO05D005251 1.7e-215 753.1 509 76.0
Medtr1g007320 Medicago truncatula HOM05D004433 ORTHO05D005251 1.7e-215 753.1 558 72.4
THA.LOC104818595 Tarenaya hassleriana HOM05D004433 ORTHO05D005251 4.9e-215 751.5 596 67.6
QL12p040912 Quercus lobata HOM05D004433 ORTHO05D005251 8.3e-215 750.7 508 76.4
Atru.chr7.2050 Acer truncatum HOM05D004433 ORTHO05D005251 1.1e-214 750.4 584 69.3
BraA04t17590Z Brassica rapa HOM05D004433 ORTHO05D005251 1.4e-214 750.0 605 67.6
Sed0005675 Sechium edule HOM05D004433 ORTHO05D005251 1.8e-214 749.6 510 74.9
FAN15G1676 Fragaria x ananassa HOM05D004433 ORTHO05D005251 2.4e-214 749.2 614 66.4
ClCG11G015050 Citrullus lanatus HOM05D004433 ORTHO05D005251 3.2e-214 748.8 510 75.5
CiPaw.08G027400 Carya illinoinensis HOM05D004433 ORTHO05D005251 5.4e-214 748.0 588 69.9
Gohir.D06G090400 Gossypium hirsutum HOM05D004433 ORTHO05D005251 7.0e-214 747.7 566 69.1
Psat6g036080 Pisum sativum HOM05D004433 ORTHO05D005251 7.0e-214 747.7 508 76.6
Potri.018G057500 Populus trichocarpa HOM05D004433 ORTHO05D005251 7.0e-214 747.7 595 68.4
Ca_03360_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 1.2e-213 746.9 501 77.6
Lalb_Chr22g0360911 Lupinus albus HOM05D004433 ORTHO05D005251 1.2e-213 746.9 541 74.1
BcaB06g29637 Brassica carinata HOM05D004433 ORTHO05D005251 2.0e-213 746.1 598 67.7
BolC4t27102H Brassica oleracea HOM05D004433 ORTHO05D005251 2.0e-213 746.1 598 67.7
MELO3C003474.2 Cucumis melo HOM05D004433 ORTHO05D005251 4.6e-213 745.0 510 74.7
CsaV3_3G048450 Cucumis sativus L. HOM05D004433 ORTHO05D005251 4.6e-213 745.0 510 74.1
Thhalv10001936m.g Eutrema salsugineum HOM05D004433 ORTHO05D005251 7.8e-213 744.2 547 70.9
ATR0705G146 Amborella trichopoda HOM05D004433 ORTHO05D005251 1.0e-212 743.8 513 73.9
SGA_v2.0_scaffold103G30047 Striga asiatica HOM05D004433 ORTHO05D005251 1.0e-212 743.8 671 62.7
Aa31LG5G9810 Aethionema arabicum HOM05D004433 ORTHO05D005251 1.3e-212 743.4 541 71.0
BcaB06g29638 Brassica carinata HOM05D004433 ORTHO05D005251 1.7e-212 743.0 591 67.3
Prupe.1G444400 Prunus persica HOM05D004433 ORTHO05D005251 1.7e-212 743.0 586 67.7
Lsat_1_v5_gn_6_7781 Lactuca sativa HOM05D004433 ORTHO05D005251 2.3e-212 742.7 592 67.7
C04p55760 Brassica napus HOM05D004433 ORTHO05D005251 3.0e-212 742.3 598 67.4
Sp4g05710 Schrenkiella parvula HOM05D004433 ORTHO05D005251 3.0e-212 742.3 612 65.5
Thecc.09G048300 Theobroma cacao HOM05D004433 ORTHO05D005251 5.0e-212 741.5 546 71.2
Glyma.14G144100 Glycine max HOM05D004433 ORTHO05D005251 1.1e-211 740.3 594 68.0
Phvul.001G078300 Phaseolus vulgaris HOM05D004433 ORTHO05D005251 1.5e-211 740.0 565 69.7
Duzib168G1809 Durio zibethinus HOM05D004433 ORTHO05D005251 1.6e-210 736.5 596 65.6
PSO210G3373 Papaver somniferum HOM05D004433 ORTHO05D005251 1.6e-210 736.5 584 66.6
Gohir.A06G091200 Gossypium hirsutum HOM05D004433 ORTHO05D005251 2.1e-210 736.1 609 65.5
CDE09G0966 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 3.6e-210 735.3 515 72.8
Carub.0004s0569 Capsella rubella HOM05D004433 ORTHO05D005251 6.2e-210 734.6 509 73.1
Gorai.010G104100 Gossypium raimondii HOM05D004433 ORTHO05D005251 1.1e-209 733.8 592 66.2
AL4G17700 Arabidopsis lyrata HOM05D004433 ORTHO05D005251 1.4e-209 733.4 522 72.2
Duzib150G0295 Durio zibethinus HOM05D004433 ORTHO05D005251 1.4e-209 733.4 607 65.4
Sc23g0005440 Simmondsia chinensis HOM05D004433 ORTHO05D005251 2.3e-209 732.6 523 71.7
Lj1g0025930 Lotus japonicus HOM05D004433 ORTHO05D005251 1.2e-208 730.3 559 70.8
MD08G1110200 Malus domestica HOM05D004433 ORTHO05D005251 2.0e-208 729.6 596 66.8
VMungo1383G1648 Vigna mungo HOM05D004433 ORTHO05D005251 2.0e-208 729.6 596 65.6
AT2G25870 Arabidopsis thaliana HOM05D004433 ORTHO05D005251 4.4e-208 728.4 509 72.9
SalBow4G2164 Salvia bowleyana HOM05D004433 ORTHO05D005251 4.4e-208 728.4 602 66.3
CARHR115360 Cardamine hirsuta HOM05D004433 ORTHO05D005251 1.7e-207 726.5 508 73.0
vmacro00182 Vaccinium macrocarpon HOM05D004433 ORTHO05D005251 3.7e-207 725.3 613 65.9
TPR.G24519 Trifolium pratense HOM05D004433 ORTHO05D005251 5.4e-206 721.5 505 74.7
AUR62040221 Chenopodium quinoa HOM05D004433 ORTHO05D005251 7.0e-206 721.1 583 66.4
AUR62009222 Chenopodium quinoa HOM05D004433 ORTHO05D005251 1.2e-205 720.3 591 65.8
DCAR_003083 Daucus carota HOM05D004433 ORTHO05D005251 1.7e-204 716.5 583 68.8
arahy.Tifrunner.gnm1.ann1.YGB7WG Arachis hypogaea HOM05D004433 ORTHO05D005251 7.3e-203 711.1 603 65.2
FAN20G2992 Fragaria x ananassa HOM05D004433 ORTHO05D005251 9.5e-203 710.7 604 64.4
Ah.10g034740 Amaranthus hybridus HOM05D004433 ORTHO05D005251 5.2e-201 704.9 599 63.3
Lj7C697T10 Lonicera japonica HOM05D004433 ORTHO05D005251 1.1e-198 697.2 580 65.7
Actinidia18212 Actinidia chinensis HOM05D004433 ORTHO05D005251 1.9e-198 696.4 461 78.5
FAN27G1484 Fragaria x ananassa HOM05D004433 ORTHO05D005251 9.2e-198 694.1 639 61.2
MBI04_g07004_MAGBIO Magnolia biondii HOM05D004433 ORTHO05D005251 7.3e-195 684.5 587 63.7
COL.COLO4_21003 Corchorus olitorius HOM05D004433 ORTHO05D005251 3.1e-193 679.1 551 67.2
Rhsim11G0049500 Rhododendron simsii HOM05D004433 ORTHO05D005251 5.8e-192 674.9 634 60.6
Manes.03G060700 Manihot esculenta HOM05D004433 ORTHO05D005251 2.3e-188 662.9 455 74.1
Prupe.1G444500 Prunus persica HOM05D004433 ORTHO05D005251 3.0e-188 662.5 586 61.6
FvH4_2g35230 Fragaria vesca HOM05D004433 ORTHO05D005251 4.4e-184 648.7 514 65.8
Manes.16G073200 Manihot esculenta HOM05D004433 ORTHO05D005251 1.7e-183 646.7 604 61.9
EL10Ac2g03971 Beta vulgaris HOM05D004433 ORTHO05D005251 1.4e-182 643.7 581 61.8
Zm00001eb153790 Zea mays HOM05D004433 ORTHO05D005251 7.8e-181 637.9 487 65.1
Hund03376 Selenicereus undatus HOM05D004433 ORTHO05D005251 1.7e-180 636.7 458 71.4
RcHm_v2.0_Chr6g0306701 Rosa chinensis HOM05D004433 ORTHO05D005251 7.3e-179 631.3 539 62.2
FAN27G0398 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.3e-178 630.6 540 62.0
Sabra18G0052000 Salix brachista HOM05D004433 ORTHO05D005251 2.0e-176 623.2 641 56.0
PSO210G0672 Papaver somniferum HOM05D004433 ORTHO05D005251 1.4e-174 617.1 584 59.1
Dinv23396 Davidia involucrata HOM05D004433 ORTHO05D005251 1.9e-166 590.1 373 80.7
Glyma.17G192300 Glycine max HOM05D004433 ORTHO05D005251 6.0e-165 585.1 485 66.8
ATR1159G027 Amborella trichopoda HOM05D004433 ORTHO05D005251 4.3e-163 578.9 558 57.9
MD08G1110300 Malus domestica HOM05D004433 ORTHO05D005251 1.0e-159 567.8 438 66.9
FAN15G3540 Fragaria x ananassa HOM05D004433 ORTHO05D005251 5.7e-155 552.0 522 58.6
Os01g0739400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 8.2e-154 548.1 550 54.5
Lj8A567T31 Lonicera japonica HOM05D004433 ORTHO05D005251 2.0e-136 490.3 344 75.3
unitig_32.g11476 Utricularia gibba HOM05D004433 ORTHO05D005251 2.3e-132 476.9 515 52.8
Os02g0227000 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.3e-127 461.1 436 53.9
Pp3c15_25010 Physcomitrium patens HOM05D004433 ORTHO05D005251 1.7e-127 460.7 486 51.0
Mapoly0124s0034 Marchantia polymorpha HOM05D004433 ORTHO05D005251 2.2e-127 460.3 533 47.7
Cc08_g09950 Coffea canephora HOM05D004433 ORTHO05D005251 6.1e-125 452.2 421 62.0
HPP92_005557 Vanilla planifolia HOM05D004433 ORTHO05D005251 3.7e-122 443.0 393 59.3
Zm00001eb239610 Zea mays HOM05D004433 ORTHO05D005251 3.7e-122 443.0 532 46.1
Oeu008300.1 Olea europaea HOM05D004433 ORTHO05D005251 1.2e-120 438.0 505 52.7
Haze_21925 Corylus avellana HOM05D004433 ORTHO05D005251 3.0e-116 423.3 315 72.7
Ca_19223_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 1.5e-107 394.4 266 77.1
Ciclev10010169m.g Citrus clementina HOM05D004433 ORTHO05D005251 2.7e-104 383.6 389 56.0
CBR_g31496 Chara braunii HOM05D004433 ORTHO05D005251 2.1e-101 374.0 488 44.3
Os09g0388400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 4.1e-89 333.2 332 54.2
Cc08_g09960 Coffea canephora HOM05D004433 ORTHO05D005251 1.1e-84 318.5 204 77.5
HPP92_003623 Vanilla planifolia HOM05D004433 ORTHO05D005251 5.8e-75 286.2 225 64.9
SEGI_35823 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 1.2e-67 261.9 202 63.4
Cpa.g.sc7.220 Carica papaya HOM05D004433 ORTHO05D005251 1.5e-67 261.5 173 73.4
SEGI_12418 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 1.6e-64 251.5 277 51.6
SMO352G0038 Selaginella moellendorffii HOM05D004433 ORTHO05D005251 2.1e-64 251.1 262 48.9
PRCOL_00001006 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 8.7e-63 245.7 390 37.9
Cpa.g.sc7.222 Carica papaya HOM05D004433 ORTHO05D005251 1.1e-60 238.8 244 57.4
Potri.006G235301 Populus trichocarpa HOM05D004433 ORTHO05D005251 7.6e-59 232.6 174 66.1
CDE02G1264 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 3.5e-56 223.8 132 80.3
FAN20G0434 Fragaria x ananassa HOM05D004433 ORTHO05D005251 4.3e-54 216.9 220 52.7
MCO02G391 Micromonas commoda HOM05D004433 ORTHO05D005251 3.8e-50 203.8 292 42.8
Hma1.2p1_0049F.1_g028280 Hydrangea macrophylla HOM05D004433 ORTHO05D005251 9.6e-46 189.1 113 82.3
Ca_12764_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 3.7e-45 187.2 177 61.6
Hund19490 Selenicereus undatus HOM05D004433 ORTHO05D005251 7.6e-43 179.5 128 69.5
Cre06.g252150 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 6.7e-39 166.4 272 40.1
Oeu059683.2 Olea europaea HOM05D004433 ORTHO05D005251 7.2e-33 146.4 106 67.0
Hund19491 Selenicereus undatus HOM05D004433 ORTHO05D005251 4.6e-32 143.7 133 57.9
Gohir.A08G152250 Gossypium hirsutum HOM05D004433 ORTHO05D005251 1.8e-31 141.7 122 59.8
MCO10G003 Micromonas commoda HOM05D004433 ORTHO05D005251 3.0e-31 141.0 269 35.3
Solyc06g011570.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 2.2e-29 134.8 112 62.5
CDE02G2445 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 2.0e-27 128.3 95 70.5
Cre09.g402997 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 5.5e-25 120.2 117 52.1
Sopen06g006790 Solanum pennellii HOM05D004433 ORTHO05D005251 9.4e-25 119.4 88 69.3
PRCOL_00006247 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 1.8e-23 115.2 268 33.2
TAR383G0959 Trochodendron aralioides HOM05D004433 ORTHO05D005251 1.5e-22 112.1 233 39.1
Os09g0393801 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.8e-20 105.1 91 58.2
Os09g0393501 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 9.1e-20 102.8 91 57.1
VMungo1215G2735 Vigna mungo HOM05D004433 ORTHO05D005251 1.2e-19 102.4 83 60.2
Lj8A567T30 Lonicera japonica HOM05D004433 ORTHO05D005251 2.2e-18 98.2 56 91.1
SGA_v2.0_scaffold266G46140 Striga asiatica HOM05D004433 ORTHO05D005251 7.2e-17 93.2 57 86.0
RcHm_v2.0_Chr6g0271151 Rosa chinensis HOM05D004433 ORTHO05D005251 1.4e-15 89.0 71 60.6
RcHm_v2.0_Chr6g0310261 Rosa chinensis HOM05D004433 ORTHO05D005251 9.7e-14 82.8 71 56.3
HPP92_005558 Vanilla planifolia HOM05D004433 ORTHO05D005251 9.7e-14 82.8 55 76.4
Ca_29420_v3 Cicer arietinum L. HOM05D003834 ORTHO05D044391 1.7e-10 72.0 109 40.4
Ca_28629_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 1.1e-09 69.3 249 26.1
TAR625G0121 Trochodendron aralioides HOM05D004433 ORTHO05D005251 1.9e-09 68.6 40 87.5
AT5G38747 Arabidopsis thaliana HOM05D004433 ORTHO05D081644 2.5e-09 68.2 59 57.6
MD15G1112400 Malus domestica HOM05D004433 ORTHO05D005251 6.1e-08 63.5 36 80.6
Pp3s32_540 Physcomitrium patens HOM05D004878 ORTHO05D021266 3.0e-07 61.2 277 24.9
CDE02G0724 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 3.4e-06 57.8 53 58.5


User provided reference genes

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