Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1344.6 Capsicum annuum HOM05D004350 ORTHO05D005260 4.8e-134 481.1 231 100.0
Solyc11g010590.3 Solanum lycopersicum HOM05D004350 ORTHO05D005260 6.8e-56 221.5 163 66.9
CAN.G525.29 Capsicum annuum HOM05D004350 ORTHO05D005260 7.4e-26 121.7 222 38.3
Sopen11g005390 Solanum pennellii HOM05D004350 ORTHO05D005260 1.3e-25 120.9 215 41.4
Nitab4.5_0004153g0110 Nicotiana tabacum HOM05D004350 ORTHO05D005260 3.7e-25 119.4 171 48.0
Solyc04g014370.4 Solanum lycopersicum HOM05D004350 ORTHO05D005260 8.1e-25 118.2 222 38.3
Sopen04g006490 Solanum pennellii HOM05D004350 ORTHO05D005260 1.4e-24 117.5 222 37.8
Hma1.2p1_0433F.1_g152050 Hydrangea macrophylla HOM05D004350 ORTHO05D005260 1.8e-24 117.1 222 36.9
vmacro18559 Vaccinium macrocarpon HOM05D004350 ORTHO05D005260 1.8e-24 117.1 222 36.5
Ah.02g123600 Amaranthus hybridus HOM05D004350 ORTHO05D005260 6.9e-24 115.2 198 38.4
AUR62017968 Chenopodium quinoa HOM05D004350 ORTHO05D005260 6.9e-24 115.2 173 42.2
PGSC0003DMG400023576 Solanum tuberosum HOM05D004350 ORTHO05D005260 1.5e-23 114.0 223 36.8
Prupe.6G201300 Prunus persica HOM05D004350 ORTHO05D005260 4.5e-23 112.5 224 36.2
Rhsim08G0016400 Rhododendron simsii HOM05D004350 ORTHO05D005260 7.6e-23 111.7 223 35.9
Hund16535 Selenicereus undatus HOM05D004350 ORTHO05D005260 9.9e-23 111.3 222 36.0
ClCG10G007720 Citrullus lanatus HOM05D004350 ORTHO05D005260 1.7e-22 110.5 209 36.8
MD01G1038800 Malus domestica HOM05D004350 ORTHO05D005260 2.2e-22 110.2 222 35.6
Aqoxy5G01391 Aquilegia oxysepala HOM05D004350 ORTHO05D005260 2.9e-22 109.8 221 35.3
CSS0009628 Camellia sinensis var. sinensis HOM05D004350 ORTHO05D005260 3.8e-22 109.4 222 36.0
Haze_03867 Corylus avellana HOM05D004350 ORTHO05D005260 3.8e-22 109.4 170 40.0
FAN19G0871 Fragaria x ananassa HOM05D004350 ORTHO05D005260 3.8e-22 109.4 205 37.6
Actinidia28826 Actinidia chinensis HOM05D004350 ORTHO05D005260 4.9e-22 109.0 222 36.9
Nitab4.5_0001468g0120 Nicotiana tabacum HOM05D004350 ORTHO05D005260 4.9e-22 109.0 207 40.6
CiPaw.08G140000 Carya illinoinensis HOM05D004350 ORTHO05D005260 6.4e-22 108.6 221 34.8
Sc03g0000310 Simmondsia chinensis HOM05D004350 ORTHO05D005260 6.4e-22 108.6 221 36.2
TAR625G1314 Trochodendron aralioides HOM05D004350 ORTHO05D005260 8.4e-22 108.2 149 45.6
HanXRQChr14g0442921 Helianthus annuus HOM05D004350 ORTHO05D005260 1.1e-21 107.8 222 36.9
Phvul.003G289100 Phaseolus vulgaris HOM05D004350 ORTHO05D005260 1.1e-21 107.8 221 35.3
FAN26G2403 Fragaria x ananassa HOM05D004350 ORTHO05D005260 1.4e-21 107.5 205 37.1
ECA238G4457 Erigeron canadensis HOM05D004350 ORTHO05D005260 2.5e-21 106.7 225 35.6
FAN28G1749 Fragaria x ananassa HOM05D004350 ORTHO05D005260 2.5e-21 106.7 204 37.3
Glyma.18G146900 Glycine max HOM05D004350 ORTHO05D005260 3.2e-21 106.3 221 35.3
AUR62003659 Chenopodium quinoa HOM05D004350 ORTHO05D005260 4.2e-21 105.9 221 36.2
FAN23G0465 Fragaria x ananassa HOM05D004350 ORTHO05D005260 4.2e-21 105.9 205 36.6
CsaV3_3G006860 Cucumis sativus L. HOM05D004350 ORTHO05D005260 5.5e-21 105.5 221 35.7
Duzib264G0362 Durio zibethinus HOM05D004350 ORTHO05D005260 5.5e-21 105.5 225 34.7
Oeu003728.1 Olea europaea HOM05D004350 ORTHO05D005260 7.1e-21 105.1 221 36.2
Eucgr.K02898 Eucalyptus grandis HOM05D004350 ORTHO05D005260 9.3e-21 104.8 221 34.4
THA.LOC104798725 Tarenaya hassleriana HOM05D004350 ORTHO05D005260 9.3e-21 104.8 221 36.2
Actinidia30847 Actinidia chinensis HOM05D004350 ORTHO05D005260 1.2e-20 104.4 223 33.2
C09p66790 Brassica napus HOM05D004350 ORTHO05D005260 1.2e-20 104.4 222 36.0
Nitab4.5_0009469g0010 Nicotiana tabacum HOM05D004350 ORTHO05D005260 2.1e-20 103.6 222 36.0
Sed0019313 Sechium edule HOM05D004350 ORTHO05D005260 2.1e-20 103.6 221 34.4
Nn1g05564 Nelumbo nucifera HOM05D004350 ORTHO05D005260 2.7e-20 103.2 221 33.9
THA.LOC104819292 Tarenaya hassleriana HOM05D004350 ORTHO05D005260 2.7e-20 103.2 222 34.2
CiPaw.07G047800 Carya illinoinensis HOM05D004350 ORTHO05D005260 3.5e-20 102.8 221 33.5
Gohir.A11G206700 Gossypium hirsutum HOM05D004350 ORTHO05D005260 3.5e-20 102.8 225 32.9
Lalb_Chr05g0216341 Lupinus albus HOM05D004350 ORTHO05D005260 3.5e-20 102.8 222 35.6
Os04g0271200 Oryza sativa ssp. japonica HOM05D004350 ORTHO05D005260 3.5e-20 102.8 224 35.3
Psat4g119600 Pisum sativum HOM05D004350 ORTHO05D005260 3.5e-20 102.8 222 35.6
GSVIVG01005931001 Vitis vinifera HOM05D004350 ORTHO05D005260 3.5e-20 102.8 221 34.8
Nn5g29888 Nelumbo nucifera HOM05D004350 ORTHO05D005260 4.6e-20 102.4 221 34.4
VMungo0251G2520 Vigna mungo HOM05D004350 ORTHO05D005260 4.6e-20 102.4 221 33.0
MBI16_g27585_MAGBIO Magnolia biondii HOM05D004350 ORTHO05D005260 6.0e-20 102.1 148 43.2
HPP92_014310 Vanilla planifolia HOM05D004350 ORTHO05D005260 7.9e-20 101.7 224 34.8
BolC9t59459H Brassica oleracea HOM05D004350 ORTHO05D005260 1.0e-19 101.3 238 34.5
Duzib187G1704 Durio zibethinus HOM05D004350 ORTHO05D005260 1.0e-19 101.3 225 32.0
TWI53G1737 Tripterygium wilfordii HOM05D004350 ORTHO05D005260 1.0e-19 101.3 222 36.5
FvH4_1g19690 Fragaria vesca HOM05D004350 ORTHO05D005260 1.3e-19 100.9 223 35.0
Oeu055598.1 Olea europaea HOM05D004350 ORTHO05D005260 1.3e-19 100.9 222 33.8
PSO017G6956 Papaver somniferum HOM05D004350 ORTHO05D005260 1.3e-19 100.9 222 33.3
PSO170G2632 Papaver somniferum HOM05D004350 ORTHO05D005260 1.3e-19 100.9 222 33.3
PSO170G6309 Papaver somniferum HOM05D004350 ORTHO05D005260 1.3e-19 100.9 222 33.3
TPR.G14596 Trifolium pratense HOM05D004350 ORTHO05D005260 1.3e-19 100.9 224 34.8
Glyma.08G279700 Glycine max HOM05D004350 ORTHO05D005260 1.8e-19 100.5 221 34.8
Medtr8g471160 Medicago truncatula HOM05D004350 ORTHO05D005260 3.0e-19 99.8 224 33.5
Dinv13605 Davidia involucrata HOM05D004350 ORTHO05D005260 3.9e-19 99.4 249 32.5
Lsat_1_v5_gn_2_70580 Lactuca sativa HOM05D004350 ORTHO05D005260 3.9e-19 99.4 225 34.2
Os01g0150200 Oryza sativa ssp. japonica HOM05D004350 ORTHO05D005260 3.9e-19 99.4 224 34.4
Potri.007G010900 Populus trichocarpa HOM05D004350 ORTHO05D005260 3.9e-19 99.4 221 34.4
PGR031G0248 Punica granatum HOM05D004350 ORTHO05D005260 3.9e-19 99.4 221 33.9
Nitab4.5_0000902g0360 Nicotiana tabacum HOM05D004350 ORTHO05D005260 5.1e-19 99.0 208 35.1
Manes.13G099500 Manihot esculenta HOM05D004350 ORTHO05D005260 6.7e-19 98.6 221 32.6
TWI74G1117 Tripterygium wilfordii HOM05D004350 ORTHO05D005260 6.7e-19 98.6 221 33.9
Lj4g0019109 Lotus japonicus HOM05D004350 ORTHO05D005260 8.7e-19 98.2 221 34.4
Ca_22608_v3 Cicer arietinum L. HOM05D004350 ORTHO05D005260 1.1e-18 97.8 223 35.0
Gohir.D11G216900 Gossypium hirsutum HOM05D004350 ORTHO05D005260 1.1e-18 97.8 225 32.4
Cc07_g14130 Coffea canephora HOM05D004350 ORTHO05D005260 1.9e-18 97.1 221 33.5
COL.COLO4_27351 Corchorus olitorius HOM05D004350 ORTHO05D005260 2.5e-18 96.7 169 36.7
BraA03t09799Z Brassica rapa HOM05D004350 ORTHO05D005260 3.3e-18 96.3 229 34.5
Carub.0006s0896 Capsella rubella HOM05D004350 ORTHO05D005260 3.3e-18 96.3 225 34.2
CDE04G1055 Ceratophyllum demersum HOM05D004350 ORTHO05D005260 3.3e-18 96.3 221 34.4
CDE06G0701 Ceratophyllum demersum HOM05D004350 ORTHO05D005260 3.3e-18 96.3 222 35.1
Zm00001eb124340 Zea mays HOM05D004350 ORTHO05D005260 3.3e-18 96.3 224 33.5
BcaB01g06282 Brassica carinata HOM05D004350 ORTHO05D005260 4.3e-18 95.9 221 33.9
C03p05130 Brassica napus HOM05D004350 ORTHO05D005260 4.3e-18 95.9 221 33.5
CANSAT01G3290 Cannabis sativa HOM05D004350 ORTHO05D005260 4.3e-18 95.9 221 33.5
Sp6g32950 Schrenkiella parvula HOM05D004350 ORTHO05D005260 4.3e-18 95.9 221 33.9
A03p04570 Brassica napus HOM05D004350 ORTHO05D005260 5.6e-18 95.5 221 33.9
Thhalv10014620m.g Eutrema salsugineum HOM05D004350 ORTHO05D005260 5.6e-18 95.5 221 33.5
Thecc.01G091200 Theobroma cacao HOM05D004350 ORTHO05D005260 5.6e-18 95.5 225 31.6
EL10Ac6g15209 Beta vulgaris HOM05D004350 ORTHO05D005260 7.4e-18 95.1 222 31.1
BcaB08g37102 Brassica carinata HOM05D004350 ORTHO05D005260 7.4e-18 95.1 221 33.9
PSO170G6456 Papaver somniferum HOM05D004350 ORTHO05D005260 7.4e-18 95.1 222 33.8
PSO541G1644 Papaver somniferum HOM05D004350 ORTHO05D005260 9.6e-18 94.7 222 32.0
BcaB01g05531 Brassica carinata HOM05D004350 ORTHO05D005260 1.3e-17 94.4 221 33.5
BolC3t13038H Brassica oleracea HOM05D004350 ORTHO05D005260 2.1e-17 93.6 229 33.6
BraA10t44761Z Brassica rapa HOM05D004350 ORTHO05D005260 2.1e-17 93.6 233 33.5
CARHR202810 Cardamine hirsuta HOM05D004350 ORTHO05D005260 2.1e-17 93.6 225 33.8
HanXRQChr11g0346981 Helianthus annuus HOM05D004350 ORTHO05D005260 2.8e-17 93.2 222 31.5
Ca_22603_v3 Cicer arietinum L. HOM05D004350 ORTHO05D005260 8.2e-17 91.7 221 30.8
Atru.chr3.1251 Acer truncatum HOM05D004350 ORTHO05D005260 1.1e-16 91.3 176 38.1
SalBow6G1994 Salvia bowleyana HOM05D004350 ORTHO05D005260 3.1e-16 89.7 225 31.6
SGA_v2.0_scaffold32G13177 Striga asiatica HOM05D004350 ORTHO05D005260 3.1e-16 89.7 222 34.2
AL6G21000 Arabidopsis lyrata HOM05D004350 ORTHO05D005260 4.0e-16 89.4 225 32.4
RcHm_v2.0_Chr2g0111251 Rosa chinensis HOM05D004350 ORTHO05D005260 4.0e-16 89.4 222 32.0
ATR0767G219 Amborella trichopoda HOM05D004350 ORTHO05D005260 5.3e-16 89.0 221 31.7
AT5G10480 Arabidopsis thaliana HOM05D004350 ORTHO05D005260 6.9e-16 88.6 225 32.4
DCAR_014186 Daucus carota HOM05D004350 ORTHO05D005260 9.0e-16 88.2 153 39.9
Phvul.002G147400 Phaseolus vulgaris HOM05D004350 ORTHO05D005260 9.0e-16 88.2 222 32.9
SGA_v2.0_scaffold58G20514 Striga asiatica HOM05D004350 ORTHO05D005260 2.0e-15 87.0 222 32.0
ECA246G1176 Erigeron canadensis HOM05D004350 ORTHO05D005260 2.6e-15 86.7 200 33.0
TAR381G0377 Trochodendron aralioides HOM05D004350 ORTHO05D005260 7.6e-15 85.1 181 33.7
PSO170G2166 Papaver somniferum HOM05D004350 ORTHO05D005260 1.0e-14 84.7 213 31.5
Gorai.007G233000 Gossypium raimondii HOM05D004350 ORTHO05D005260 1.7e-14 84.0 177 33.3
Os01g0150500 Oryza sativa ssp. japonica HOM05D004350 ORTHO05D005260 1.7e-14 84.0 164 35.4
QL06p035732 Quercus lobata HOM05D004350 ORTHO05D005260 2.9e-14 83.2 225 29.8
arahy.Tifrunner.gnm1.ann1.4PU0PP Arachis hypogaea HOM05D004350 ORTHO05D005260 8.4e-14 81.6 172 37.8
arahy.Tifrunner.gnm1.ann1.Y3UPDN Arachis hypogaea HOM05D004350 ORTHO05D005260 8.4e-14 81.6 172 37.8
Aa31LG5G22920 Aethionema arabicum HOM05D004350 ORTHO05D005260 1.1e-13 81.3 175 36.6
A10p27090 Brassica napus HOM05D004350 ORTHO05D005260 1.1e-13 81.3 188 34.6
MD15G1313000 Malus domestica HOM05D004350 ORTHO05D005260 1.1e-13 81.3 107 43.0
MELO3C016419.2 Cucumis melo HOM05D004350 ORTHO05D005260 4.2e-13 79.3 107 43.9
Cfa006886 Carpinus fangiana HOM05D004350 ORTHO05D005260 7.1e-13 78.6 177 32.2
VMungo1215G0627 Vigna mungo HOM05D004350 ORTHO05D005260 1.6e-12 77.4 175 34.9
Aa31LG3G16680 Aethionema arabicum HOM05D004350 ORTHO05D005260 2.1e-12 77.0 172 34.3
AUR62043746 Chenopodium quinoa HOM05D004350 ORTHO05D005260 3.5e-12 76.3 81 45.7
Peaxi162Scf00196g00225 Petunia axillaris HOM05D004350 ORTHO05D005260 6.0e-12 75.5 194 32.5
Lalb_Chr16g0381651 Lupinus albus HOM05D004350 ORTHO05D005260 7.9e-12 75.1 108 40.7
SEGI_08262 Sequoiadendron giganteum HOM05D004350 ORTHO05D005260 1.0e-11 74.7 107 42.1
Lsat_1_v5_gn_6_77521 Lactuca sativa HOM05D002474 ORTHO05D006727 5.1e-11 72.4 82 42.7
Migut.B00221 Erythranthe guttata HOM05D004350 ORTHO05D005260 6.7e-11 72.0 107 41.1
PGSC0003DMG400016135 Solanum tuberosum HOM05D004350 ORTHO05D005260 1.1e-10 71.2 40 82.5
Pp3c2_13410 Physcomitrium patens HOM05D004350 ORTHO05D005260 4.3e-10 69.3 217 29.5
Lsat_1_v5_gn_3_62861 Lactuca sativa HOM05D004350 ORTHO05D005260 2.8e-09 66.6 78 43.6
Os01g0150800 Oryza sativa ssp. japonica HOM05D004350 ORTHO05D005260 2.4e-08 63.5 224 28.1
Mapoly0034s0103 Marchantia polymorpha HOM05D004350 ORTHO05D005260 6.9e-08 62.0 107 35.5
Dinv36926 Davidia involucrata HOM05D004350 ORTHO05D005260 1.5e-07 60.8 38 76.3
PRCOL_00006117 Prasinoderma coloniale HOM05D004350 ORTHO05D005260 4.5e-07 59.3 114 33.3
Lju188A2T35 Lonicera japonica HOM05D004350 ORTHO05D005260 1.0e-06 58.2 61 49.2
FAN19G1284 Fragaria x ananassa HOM05D004350 ORTHO05D005260 1.7e-06 57.4 38 71.1
Cpa.g.sc55.29 Carica papaya HOM05D004350 ORTHO05D005260 2.2e-06 57.0 37 73.0
SMO266G0038 Selaginella moellendorffii HOM05D004350 ORTHO05D005260 2.2e-06 57.0 165 29.1
Sabra07G0008400 Salix brachista HOM05D004350 ORTHO05D005260 8.5e-06 55.1 37 70.3


User provided reference genes

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