Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G128.99 Capsicum annuum HOM05D003084 ORTHO05D003580 1.3e-186 656.4 374 100.0
CAN.G128.100 Capsicum annuum HOM05D003084 ORTHO05D003580 2.1e-99 366.7 305 65.2
Sopen10g031590 Solanum pennellii HOM05D003084 ORTHO05D003580 2.1e-99 366.7 305 65.2
PGSC0003DMG400028106 Solanum tuberosum HOM05D003084 ORTHO05D003580 2.1e-99 366.7 305 65.2
Migut.J01608 Erythranthe guttata HOM05D003084 ORTHO05D003580 3.6e-99 365.9 305 64.6
SGA_v2.0_scaffold106G30555 Striga asiatica HOM05D003084 ORTHO05D003580 6.2e-99 365.2 305 64.6
CANSAT01G3215 Cannabis sativa HOM05D003084 ORTHO05D003580 1.8e-98 363.6 305 64.3
Atru.chr2.3187 Acer truncatum HOM05D003084 ORTHO05D003580 3.1e-98 362.8 305 64.3
Atru.chr2.3199 Acer truncatum HOM05D003084 ORTHO05D003580 3.1e-98 362.8 305 64.3
COL.COLO4_32309 Corchorus olitorius HOM05D003084 ORTHO05D003580 3.1e-98 362.8 308 63.3
ECA233G4363 Erigeron canadensis HOM05D003084 ORTHO05D003580 4.0e-98 362.5 305 64.3
HanXRQChr02g0058761 Helianthus annuus HOM05D003084 ORTHO05D003580 4.0e-98 362.5 305 64.3
Atru.chr7.2125 Acer truncatum HOM05D003084 ORTHO05D003580 6.8e-98 361.7 305 63.9
DCAR_026599 Daucus carota HOM05D003084 ORTHO05D003580 6.8e-98 361.7 305 63.9
Lalb_Chr18g0060491 Lupinus albus HOM05D003084 ORTHO05D003580 6.8e-98 361.7 305 63.9
Hma1.2p1_0996F.1_g245870 Hydrangea macrophylla HOM05D003084 ORTHO05D003580 8.9e-98 361.3 305 63.6
MD17G1162000 Malus domestica HOM05D003084 ORTHO05D003580 8.9e-98 361.3 305 63.9
MD17G1162100 Malus domestica HOM05D003084 ORTHO05D003580 8.9e-98 361.3 305 63.9
BcaB04g19963 Brassica carinata HOM05D003084 ORTHO05D003580 1.2e-97 360.9 308 62.7
A09p08590 Brassica napus HOM05D003084 ORTHO05D003580 1.2e-97 360.9 308 62.7
C09p09710 Brassica napus HOM05D003084 ORTHO05D003580 1.2e-97 360.9 308 62.7
BolC9t53882H Brassica oleracea HOM05D003084 ORTHO05D003580 1.2e-97 360.9 308 62.7
BraA09t36508Z Brassica rapa HOM05D003084 ORTHO05D003580 1.2e-97 360.9 308 62.7
Cc02_g31230 Coffea canephora HOM05D003084 ORTHO05D003580 1.2e-97 360.9 305 63.6
Cc09_g09140 Coffea canephora HOM05D003084 ORTHO05D003580 1.2e-97 360.9 305 63.6
Dinv23897 Davidia involucrata HOM05D003084 ORTHO05D003580 1.5e-97 360.5 305 63.6
Dinv23905 Davidia involucrata HOM05D003084 ORTHO05D003580 1.5e-97 360.5 305 63.6
Lalb_Chr15g0090381 Lupinus albus HOM05D003084 ORTHO05D003580 1.5e-97 360.5 305 63.6
Peaxi162Scf00153g00138 Petunia axillaris HOM05D003084 ORTHO05D003580 1.5e-97 360.5 305 64.3
MSTRG.6294 Avicennia marina HOM05D003084 ORTHO05D003580 2.0e-97 360.1 305 63.6
Ciclev10010658m.g Citrus clementina HOM05D003084 ORTHO05D003580 2.0e-97 360.1 305 63.9
Oeu060755.1 Olea europaea HOM05D003084 ORTHO05D003580 2.0e-97 360.1 305 63.3
Thecc.02G134200 Theobroma cacao HOM05D003084 ORTHO05D003580 2.0e-97 360.1 305 63.6
CSS0001529 Camellia sinensis var. sinensis HOM05D003084 ORTHO05D003580 2.6e-97 359.8 305 63.3
AUR62004235 Chenopodium quinoa HOM05D003084 ORTHO05D003580 2.6e-97 359.8 308 63.0
AUR62007850 Chenopodium quinoa HOM05D003084 ORTHO05D003580 2.6e-97 359.8 308 63.0
AUR62013613 Chenopodium quinoa HOM05D003084 ORTHO05D003580 2.6e-97 359.8 308 63.0
Duzib052G0048 Durio zibethinus HOM05D003084 ORTHO05D003580 2.6e-97 359.8 305 63.3
PGR142G4455 Punica granatum HOM05D003084 ORTHO05D003580 2.6e-97 359.8 305 63.6
ATR0307G103 Amborella trichopoda HOM05D003084 ORTHO05D003580 3.4e-97 359.4 308 63.0
AagrBONN_evm.TU.Sc2ySwM_362.2841 Anthoceros agrestis HOM05D003084 ORTHO05D003580 3.4e-97 359.4 308 62.7
Aqoxy2G00351 Aquilegia oxysepala HOM05D003084 ORTHO05D003580 3.4e-97 359.4 308 63.0
Carub.0008s2506 Capsella rubella HOM05D003084 ORTHO05D003580 3.4e-97 359.4 305 63.0
Eucgr.I02637 Eucalyptus grandis HOM05D003084 ORTHO05D003580 3.4e-97 359.4 305 63.6
Prupe.8G065000 Prunus persica HOM05D003084 ORTHO05D003580 3.4e-97 359.4 305 63.3
RhsimUnG0019800 Rhododendron simsii HOM05D003084 ORTHO05D003580 3.4e-97 359.4 308 62.7
Sc13g0006780 Simmondsia chinensis HOM05D003084 ORTHO05D003580 3.4e-97 359.4 305 63.6
vmacro07762 Vaccinium macrocarpon HOM05D003084 ORTHO05D003580 3.4e-97 359.4 308 62.7
arahy.Tifrunner.gnm1.ann1.4W8ZMG Arachis hypogaea HOM05D003084 ORTHO05D003580 4.4e-97 359.0 305 63.6
arahy.Tifrunner.gnm1.ann1.PVIH4H Arachis hypogaea HOM05D003084 ORTHO05D003580 4.4e-97 359.0 305 63.6
FvH4_2g14010 Fragaria vesca HOM05D003084 ORTHO05D003580 4.4e-97 359.0 305 63.6
FAN20G2309 Fragaria x ananassa HOM05D003084 ORTHO05D003580 4.4e-97 359.0 305 63.6
FAN24G1613 Fragaria x ananassa HOM05D003084 ORTHO05D003580 4.4e-97 359.0 305 63.6
FAN27G2201 Fragaria x ananassa HOM05D003084 ORTHO05D003580 4.4e-97 359.0 305 63.6
Lj6g0000948 Lotus japonicus HOM05D003084 ORTHO05D003580 4.4e-97 359.0 305 63.6
Nn4g23295 Nelumbo nucifera HOM05D003084 ORTHO05D003580 4.4e-97 359.0 308 62.7
RcHm_v2.0_Chr6g0275901 Rosa chinensis HOM05D003084 ORTHO05D003580 4.4e-97 359.0 305 63.6
unitig_744.g24164 Utricularia gibba HOM05D003084 ORTHO05D003580 4.4e-97 359.0 305 63.6
Actinidia38769 Actinidia chinensis HOM05D003084 ORTHO05D003580 5.8e-97 358.6 308 62.7
Gohir.A12G015800 Gossypium hirsutum HOM05D003084 ORTHO05D003580 5.8e-97 358.6 305 63.3
Gohir.D12G016100 Gossypium hirsutum HOM05D003084 ORTHO05D003580 5.8e-97 358.6 305 63.3
Gorai.008G016300 Gossypium raimondii HOM05D003084 ORTHO05D003580 5.8e-97 358.6 305 63.3
Lsat_1_v5_gn_6_59920 Lactuca sativa HOM05D003084 ORTHO05D003580 5.8e-97 358.6 305 63.3
THA.LOC104799861 Tarenaya hassleriana HOM05D003084 ORTHO05D003580 5.8e-97 358.6 308 62.3
TWI23G0442 Tripterygium wilfordii HOM05D003084 ORTHO05D003580 5.8e-97 358.6 305 63.6
Ah.05g172970 Amaranthus hybridus HOM05D003084 ORTHO05D003580 9.9e-97 357.8 308 62.3
Ah.05g175190 Amaranthus hybridus HOM05D003084 ORTHO05D003580 9.9e-97 357.8 308 62.3
Glyma.15G083300 Glycine max HOM05D003084 ORTHO05D003580 9.9e-97 357.8 308 62.7
Lj3P537T27 Lonicera japonica HOM05D003084 ORTHO05D003580 9.9e-97 357.8 305 63.9
Lj3P547T47 Lonicera japonica HOM05D003084 ORTHO05D003580 9.9e-97 357.8 305 63.9
Mapoly0134s0023 Marchantia polymorpha HOM05D003084 ORTHO05D003580 9.9e-97 357.8 308 62.3
Phvul.006G175600 Phaseolus vulgaris HOM05D003084 ORTHO05D003580 9.9e-97 357.8 308 62.7
HPP92_010359 Vanilla planifolia HOM05D003084 ORTHO05D003580 9.9e-97 357.8 308 62.3
VMungo0540G2012 Vigna mungo HOM05D003084 ORTHO05D003580 9.9e-97 357.8 308 62.7
Ca_00144_v3 Cicer arietinum L. HOM05D003084 ORTHO05D003580 1.3e-96 357.5 305 63.3
MBI04_g36083_MAGBIO Magnolia biondii HOM05D003084 ORTHO05D003580 1.3e-96 357.5 308 62.7
MBI14_g36930_MAGBIO Magnolia biondii HOM05D003084 ORTHO05D003580 1.3e-96 357.5 308 62.7
Medtr2g009110 Medicago truncatula HOM05D003084 ORTHO05D003580 1.3e-96 357.5 305 63.3
Sed0019948 Sechium edule HOM05D003084 ORTHO05D003580 1.3e-96 357.5 305 63.0
TAR629G3161 Trochodendron aralioides HOM05D003084 ORTHO05D003580 1.3e-96 357.5 308 62.3
TAR636G3251 Trochodendron aralioides HOM05D003084 ORTHO05D003580 1.3e-96 357.5 308 62.3
EL10Ac1g00935 Beta vulgaris HOM05D003084 ORTHO05D003580 1.7e-96 357.1 308 62.7
Manes.10G104400 Manihot esculenta HOM05D003084 ORTHO05D003580 1.7e-96 357.1 308 62.0
TWI59G0520 Tripterygium wilfordii HOM05D003084 ORTHO05D003580 1.7e-96 357.1 305 63.0
AL8G41630 Arabidopsis lyrata HOM05D003084 ORTHO05D003580 2.2e-96 356.7 305 62.3
CiPaw.16G001600 Carya illinoinensis HOM05D003084 ORTHO05D003580 2.2e-96 356.7 305 63.3
CiPaw.16G001700 Carya illinoinensis HOM05D003084 ORTHO05D003580 2.2e-96 356.7 305 63.3
MELO3C024822.2 Cucumis melo HOM05D003084 ORTHO05D003580 2.2e-96 356.7 305 63.0
CsaV3_4G009520 Cucumis sativus L. HOM05D003084 ORTHO05D003580 2.2e-96 356.7 305 63.0
Glyma.13G229200 Glycine max HOM05D003084 ORTHO05D003580 2.2e-96 356.7 308 62.3
Aa31LG1G17630 Aethionema arabicum HOM05D003084 ORTHO05D003580 2.9e-96 356.3 308 62.0
arahy.Tifrunner.gnm1.ann1.6856EH Arachis hypogaea HOM05D003084 ORTHO05D003580 2.9e-96 356.3 305 63.3
CDE09G0434 Ceratophyllum demersum HOM05D003084 ORTHO05D003580 2.9e-96 356.3 308 62.0
Haze_17408 Corylus avellana HOM05D003084 ORTHO05D003580 2.9e-96 356.3 305 63.3
AT5G64270 Arabidopsis thaliana HOM05D003084 ORTHO05D003580 3.8e-96 355.9 305 62.3
PSO832G0894 Papaver somniferum HOM05D003084 ORTHO05D003580 3.8e-96 355.9 308 62.3
ClCG10G009340 Citrullus lanatus HOM05D003084 ORTHO05D003580 4.9e-96 355.5 305 62.6
Psat4g019320 Pisum sativum HOM05D003084 ORTHO05D003580 4.9e-96 355.5 305 63.0
AUR62032335 Chenopodium quinoa HOM05D003084 ORTHO05D003580 6.4e-96 355.1 308 62.0
Migut.D02560 Erythranthe guttata HOM05D003084 ORTHO05D003580 8.4e-96 354.8 305 62.6
Os02g0146400 Oryza sativa ssp. japonica HOM05D003084 ORTHO05D003580 8.4e-96 354.8 308 62.3
PSO063G3636 Papaver somniferum HOM05D003084 ORTHO05D003580 8.4e-96 354.8 308 62.0
QL12p003834 Quercus lobata HOM05D003084 ORTHO05D003580 8.4e-96 354.8 305 63.0
SEGI_22402 Sequoiadendron giganteum HOM05D003084 ORTHO05D003580 8.4e-96 354.8 308 62.3
Psat1g216360 Pisum sativum HOM05D003084 ORTHO05D003580 1.1e-95 354.4 305 62.3
Sp2g27330 Schrenkiella parvula HOM05D003084 ORTHO05D003580 1.1e-95 354.4 308 62.0
HanXRQChr07g0185681 Helianthus annuus HOM05D003084 ORTHO05D003580 1.4e-95 354.0 305 63.0
Zm00001eb232170 Zea mays HOM05D003084 ORTHO05D003580 1.4e-95 354.0 308 62.0
Pp3c11_14450 Physcomitrium patens HOM05D003084 ORTHO05D003580 1.9e-95 353.6 308 61.4
Potri.017G050800 Populus trichocarpa HOM05D003084 ORTHO05D003580 1.9e-95 353.6 305 62.3
CARHR278180 Cardamine hirsuta HOM05D003084 ORTHO05D003580 3.2e-95 352.8 308 61.4
SHI54885 Sapria himalayana HOM05D003084 ORTHO05D003580 3.2e-95 352.8 305 62.0
Zm00001eb208060 Zea mays HOM05D003084 ORTHO05D003580 3.2e-95 352.8 308 62.0
DCAR_017867 Daucus carota HOM05D003084 ORTHO05D003580 4.2e-95 352.4 308 61.0
Nitab4.5_0003286g0010 Nicotiana tabacum HOM05D003084 ORTHO05D003580 5.4e-95 352.1 305 63.6
Potri.001G310900 Populus trichocarpa HOM05D003084 ORTHO05D003580 5.4e-95 352.1 305 62.3
Sabra16G0196500 Salix brachista HOM05D003084 ORTHO05D003580 5.4e-95 352.1 305 62.3
Sabra17G0037200 Salix brachista HOM05D003084 ORTHO05D003580 5.4e-95 352.1 305 62.0
Sabra17G0042500 Salix brachista HOM05D003084 ORTHO05D003580 5.4e-95 352.1 305 62.0
HPP92_010380 Vanilla planifolia HOM05D003084 ORTHO05D003580 9.2e-95 351.3 309 62.1
COL.COLO4_32308 Corchorus olitorius HOM05D003084 ORTHO05D003580 2.3e-93 346.7 308 60.4
CBR_g38933 Chara braunii HOM05D003084 ORTHO05D003580 3.0e-93 346.3 305 60.0
CBR_g21841 Chara braunii HOM05D003084 ORTHO05D003580 3.9e-93 345.9 305 60.0
Haze_07018 Corylus avellana HOM05D003084 ORTHO05D003580 3.9e-93 345.9 302 62.6
CDE02G2072 Ceratophyllum demersum HOM05D003084 ORTHO05D003580 5.1e-93 345.5 289 64.0
DCAR_026292 Daucus carota HOM05D003084 ORTHO05D003580 7.3e-92 341.7 305 60.7
SMO134G0059 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 6.2e-91 338.6 304 59.5
Os02g0478900 Oryza sativa ssp. japonica HOM05D003084 ORTHO05D003580 2.4e-90 336.7 308 59.1
MCO09G793 Micromonas commoda HOM05D003084 ORTHO05D003580 1.5e-89 334.0 305 58.0
BolC3t18459H Brassica oleracea HOM05D003084 ORTHO05D003580 7.6e-89 331.6 305 59.3
Thhalv10005618m.g Eutrema salsugineum HOM05D003084 ORTHO05D003580 3.8e-88 329.3 308 58.4
A06p30960 Brassica napus HOM05D003084 ORTHO05D003580 4.2e-87 325.9 308 57.5
Cre12.g494100 Chlamydomonas reinhardtii HOM05D003084 ORTHO05D003580 5.4e-87 325.5 305 58.0
BraA06t26038Z Brassica rapa HOM05D003084 ORTHO05D003580 1.2e-86 324.3 308 57.5
Carub.0013s0010 Capsella rubella HOM05D003084 ORTHO05D003580 1.6e-86 323.9 295 60.0
FvH4_3g24440 Fragaria vesca HOM05D003084 ORTHO05D003580 2.7e-86 323.2 305 57.4
PRCOL_00002641 Prasinoderma coloniale HOM05D003084 ORTHO05D003580 2.7e-86 323.2 306 56.5
Actinidia38789 Actinidia chinensis HOM05D003084 ORTHO05D003580 3.5e-86 322.8 295 60.0
FAN11G1592 Fragaria x ananassa HOM05D003084 ORTHO05D003580 3.5e-86 322.8 305 57.4
Thhalv10024248m.g Eutrema salsugineum HOM05D003084 ORTHO05D003580 7.8e-86 321.6 308 58.1
RcHm_v2.0_Chr5g0043941 Rosa chinensis HOM05D003084 ORTHO05D003580 7.8e-86 321.6 289 57.8
HPP92_010409 Vanilla planifolia HOM05D003084 ORTHO05D003580 2.1e-83 313.5 268 63.4
HPP92_019915 Vanilla planifolia HOM05D003084 ORTHO05D003580 2.8e-83 313.2 267 62.5
FAN15G1682 Fragaria x ananassa HOM05D003084 ORTHO05D003580 1.8e-82 310.5 284 59.9
GSVIVG01025852001 Vitis vinifera HOM05D003084 ORTHO05D003580 1.8e-82 310.5 251 65.7
FAN21G2367 Fragaria x ananassa HOM05D003084 ORTHO05D003580 1.3e-80 304.3 282 57.8
Aqoxy3G02504 Aquilegia oxysepala HOM05D003084 ORTHO05D003580 9.3e-79 298.1 308 52.9
Cfa022297 Carpinus fangiana HOM05D003084 ORTHO05D003580 2.3e-77 293.5 308 50.6
SMO361G0653 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 6.2e-75 285.4 305 51.5
SMO361G0072 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 9.9e-73 278.1 305 50.5
vmacro02485 Vaccinium macrocarpon HOM05D003084 ORTHO05D003580 9.9e-73 278.1 281 56.2
Haze_26699 Corylus avellana HOM05D003084 ORTHO05D003580 8.7e-69 265.0 293 48.5
Nitab4.5_0000062g0290 Nicotiana tabacum HOM05D003084 ORTHO05D003580 1.6e-67 260.8 201 70.6
Actinidia28117 Actinidia chinensis HOM05D003084 ORTHO05D003580 3.7e-67 259.6 305 50.2
CSS0044491 Camellia sinensis var. sinensis HOM05D003084 ORTHO05D003580 2.5e-63 246.9 248 56.0
Peaxi162Scf00541g00066 Petunia axillaris HOM05D003084 ORTHO05D003580 1.9e-55 220.7 208 56.2
DCAR_028101 Daucus carota HOM05D003084 ORTHO05D003580 2.5e-55 220.3 238 51.7
TPR.G10901 Trifolium pratense HOM05D003084 ORTHO05D003580 1.2e-46 191.4 257 47.5
DCAR_024485 Daucus carota HOM05D003084 ORTHO05D003580 1.0e-45 188.3 231 47.2
Rhsim09G0053300 Rhododendron simsii HOM05D003084 ORTHO05D003580 9.4e-39 165.2 198 51.0
ATR0618G293 Amborella trichopoda HOM05D003084 ORTHO05D003580 3.0e-37 160.2 151 55.6
C03p62000 Brassica napus HOM05D003084 ORTHO05D003580 6.7e-37 159.1 142 62.7
Sopen10g031790 Solanum pennellii HOM05D003084 ORTHO05D003580 6.1e-30 136.0 154 47.4
PGSC0003DMG400040134 Solanum tuberosum HOM05D003084 ORTHO05D003580 8.0e-30 135.6 162 45.7
Actinidia17683 Actinidia chinensis HOM05D003084 ORTHO05D003580 1.4e-29 134.8 250 35.6
Solyc10g081290.2 Solanum lycopersicum HOM05D003084 ORTHO05D003580 2.6e-20 104.0 125 45.6
Actinidia15649 Actinidia chinensis HOM05D003084 ORTHO05D003580 5.9e-17 92.8 172 39.0
MD12G1233800 Malus domestica HOM05D003084 ORTHO05D003580 1.6e-14 84.7 60 65.0
Peaxi162Scf00920g00062 Petunia axillaris HOM05D003084 ORTHO05D003580 2.8e-14 84.0 133 41.4
Dinv04118 Davidia involucrata HOM05D003084 ORTHO05D003580 1.2e-12 78.6 114 44.7
Actinidia37731 Actinidia chinensis HOM05D003084 ORTHO05D003580 4.1e-10 70.1 142 35.2
DCAR_028103 Daucus carota HOM05D003084 ORTHO05D018407 4.3e-07 60.1 87 43.7
ATR0618G025 Amborella trichopoda HOM05D003084 ORTHO05D003580 3.6e-06 57.0 51 58.8


User provided reference genes

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