Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1231.26 Capsicum annuum HOM05D004180 ORTHO05D005323 2.4e-44 181.8 92 100.0
CAN.G352.60 Capsicum annuum HOM05D004180 ORTHO05D005323 1.2e-30 136.3 73 97.3
Nitab4.5_0001311g0030 Nicotiana tabacum HOM05D004180 ORTHO05D005323 2.6e-30 135.2 73 95.9
Nitab4.5_0011188g0020 Nicotiana tabacum HOM05D004180 ORTHO05D005323 2.6e-30 135.2 73 95.9
Peaxi162Scf00089g00242 Petunia axillaris HOM05D004180 ORTHO05D005323 2.6e-30 135.2 73 95.9
Solyc03g110910.4 Solanum lycopersicum HOM05D004180 ORTHO05D005323 2.6e-30 135.2 73 95.9
Sopen03g030100 Solanum pennellii HOM05D004180 ORTHO05D005323 2.6e-30 135.2 73 95.9
PGSC0003DMG401015202 Solanum tuberosum HOM05D004180 ORTHO05D005323 2.6e-30 135.2 73 95.9
Lsat_1_v5_gn_1_8721 Lactuca sativa HOM05D004180 ORTHO05D005323 8.2e-29 130.2 73 93.2
HanXRQChr02g0035141 Helianthus annuus HOM05D004180 ORTHO05D005323 1.1e-28 129.8 73 91.8
Lj5C100T5 Lonicera japonica HOM05D004180 ORTHO05D005323 1.1e-28 129.8 73 91.8
Lalb_Chr08g0236941 Lupinus albus HOM05D004180 ORTHO05D005323 1.1e-28 129.8 73 91.8
Oeu037582.1 Olea europaea HOM05D004180 ORTHO05D005323 1.1e-28 129.8 73 90.4
Cc04_g10350 Coffea canephora HOM05D004180 ORTHO05D005323 1.8e-28 129.0 73 90.4
Dinv38470 Davidia involucrata HOM05D004180 ORTHO05D005323 2.4e-28 128.6 73 89.0
Oeu044608.1 Olea europaea HOM05D004180 ORTHO05D005323 2.4e-28 128.6 73 89.0
Aqoxy3G01433 Aquilegia oxysepala HOM05D004180 ORTHO05D005323 3.1e-28 128.3 73 90.4
arahy.Tifrunner.gnm1.ann1.598RU2 Arachis hypogaea HOM05D004180 ORTHO05D005323 3.1e-28 128.3 73 89.0
arahy.Tifrunner.gnm1.ann1.Y3SZAS Arachis hypogaea HOM05D004180 ORTHO05D005323 3.1e-28 128.3 73 89.0
Haze_07277 Corylus avellana HOM05D004180 ORTHO05D005323 3.1e-28 128.3 73 89.0
QL10p005240 Quercus lobata HOM05D004180 ORTHO05D005323 3.1e-28 128.3 73 89.0
THA.LOC104811605 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 3.1e-28 128.3 73 90.4
CiPaw.12G035600 Carya illinoinensis HOM05D004180 ORTHO05D005323 4.1e-28 127.9 73 89.0
ClCG06G017620 Citrullus lanatus HOM05D004180 ORTHO05D005323 4.1e-28 127.9 73 89.0
Medtr1g107255 Medicago truncatula HOM05D004180 ORTHO05D005323 4.1e-28 127.9 73 90.4
Psat6g217640 Pisum sativum HOM05D004180 ORTHO05D005323 4.1e-28 127.9 73 90.4
Aa31LG3G5910 Aethionema arabicum HOM05D004180 ORTHO05D005323 5.3e-28 127.5 73 90.4
CANSAT80G2894 Cannabis sativa HOM05D004180 ORTHO05D005323 5.3e-28 127.5 73 89.0
Migut.I00474 Erythranthe guttata HOM05D004180 ORTHO05D005323 5.3e-28 127.5 73 89.0
Glyma.04G192900 Glycine max HOM05D004180 ORTHO05D005323 5.3e-28 127.5 73 89.0
SalBow5G4699 Salvia bowleyana HOM05D004180 ORTHO05D005323 5.3e-28 127.5 73 87.7
SGA_v2.0_scaffold338G49249 Striga asiatica HOM05D004180 ORTHO05D005323 5.3e-28 127.5 73 87.7
TPR.G3286 Trifolium pratense HOM05D004180 ORTHO05D005323 5.3e-28 127.5 73 89.0
Actinidia19386 Actinidia chinensis HOM05D004180 ORTHO05D005323 7.0e-28 127.1 73 89.0
Ca_16090_v3 Cicer arietinum L. HOM05D004180 ORTHO05D005323 7.0e-28 127.1 73 90.4
unitig_22.g5936 Utricularia gibba HOM05D004180 ORTHO05D005323 7.0e-28 127.1 73 87.7
Actinidia16192 Actinidia chinensis HOM05D004180 ORTHO05D005323 9.1e-28 126.7 84 75.0
MELO3C026234.2 Cucumis melo HOM05D004180 ORTHO05D005323 9.1e-28 126.7 73 87.7
CsaV3_1G000820 Cucumis sativus L. HOM05D004180 ORTHO05D005323 9.1e-28 126.7 73 87.7
Nn4g22462 Nelumbo nucifera HOM05D004180 ORTHO05D005323 9.1e-28 126.7 73 89.0
Sed0010285 Sechium edule HOM05D004180 ORTHO05D005323 9.1e-28 126.7 73 87.7
TAR622G0515 Trochodendron aralioides HOM05D004180 ORTHO05D005323 9.1e-28 126.7 73 89.0
Lj1g0008389 Lotus japonicus HOM05D004180 ORTHO05D005323 1.2e-27 126.3 73 87.7
Phvul.009G168900 Phaseolus vulgaris HOM05D004180 ORTHO05D005323 1.2e-27 126.3 73 87.7
Hma1.2p1_0046F.1_g027540 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 1.6e-27 125.9 73 87.7
Hma1.2p1_0046F.1_g027550 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 1.6e-27 125.9 73 87.7
RcHm_v2.0_Chr7g0191201 Rosa chinensis HOM05D004180 ORTHO05D005323 2.0e-27 125.6 73 86.3
THA.LOC104803140 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 2.0e-27 125.6 73 87.7
Ah.08g218120 Amaranthus hybridus HOM05D004180 ORTHO05D005323 2.7e-27 125.2 73 86.3
MSTRG.22929 Avicennia marina HOM05D004180 ORTHO05D005323 2.7e-27 125.2 73 86.3
CSS0024351 Camellia sinensis var. sinensis HOM05D004180 ORTHO05D005323 2.7e-27 125.2 73 87.7
Potri.015G090500 Populus trichocarpa HOM05D004180 ORTHO05D005323 2.7e-27 125.2 73 87.7
Prupe.5G157100 Prunus persica HOM05D004180 ORTHO05D005323 2.7e-27 125.2 73 86.3
FvH4_5g07340 Fragaria vesca HOM05D004180 ORTHO05D005323 3.5e-27 124.8 73 86.3
FAN04G2334 Fragaria x ananassa HOM05D004180 ORTHO05D005323 3.5e-27 124.8 73 86.3
FAN08G3357 Fragaria x ananassa HOM05D004180 ORTHO05D005323 3.5e-27 124.8 73 86.3
FAN13G2268 Fragaria x ananassa HOM05D004180 ORTHO05D005323 3.5e-27 124.8 73 86.3
FAN18G2865 Fragaria x ananassa HOM05D004180 ORTHO05D005323 3.5e-27 124.8 73 86.3
Potri.012G092800 Populus trichocarpa HOM05D004180 ORTHO05D005323 3.5e-27 124.8 73 87.7
AUR62001277 Chenopodium quinoa HOM05D004180 ORTHO05D005323 4.5e-27 124.4 73 86.3
AUR62025729 Chenopodium quinoa HOM05D004180 ORTHO05D005323 4.5e-27 124.4 73 86.3
ECA247G0271 Erigeron canadensis HOM05D004180 ORTHO05D005323 4.5e-27 124.4 73 87.7
Glyma.06G173000 Glycine max HOM05D004180 ORTHO05D005323 4.5e-27 124.4 73 87.7
MBI11_g17238_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 4.5e-27 124.4 73 87.7
Sabra12G0067400 Salix brachista HOM05D004180 ORTHO05D005323 4.5e-27 124.4 73 87.7
VMungo1309G1699 Vigna mungo HOM05D004180 ORTHO05D005323 4.5e-27 124.4 72 87.5
Atru.chr9.1011 Acer truncatum HOM05D004180 ORTHO05D005323 5.9e-27 124.0 73 86.3
COL.COLO4_09266 Corchorus olitorius HOM05D004180 ORTHO05D005323 5.9e-27 124.0 73 86.3
Duzib084G0269 Durio zibethinus HOM05D004180 ORTHO05D005323 5.9e-27 124.0 73 86.3
Gohir.A11G035300 Gossypium hirsutum HOM05D004180 ORTHO05D005323 5.9e-27 124.0 73 86.3
Gohir.D11G038900 Gossypium hirsutum HOM05D004180 ORTHO05D005323 5.9e-27 124.0 73 86.3
Gorai.007G041800 Gossypium raimondii HOM05D004180 ORTHO05D005323 5.9e-27 124.0 73 86.3
MD14G1163700 Malus domestica HOM05D004180 ORTHO05D005323 5.9e-27 124.0 73 84.9
Manes.14G055300 Manihot esculenta HOM05D004180 ORTHO05D005323 5.9e-27 124.0 73 86.3
PSO063G5665 Papaver somniferum HOM05D004180 ORTHO05D005323 5.9e-27 124.0 73 84.9
Cpa.g.sc4.68 Carica papaya HOM05D004180 ORTHO05D005323 7.7e-27 123.6 73 86.3
Eucgr.B00149 Eucalyptus grandis HOM05D004180 ORTHO05D005323 7.7e-27 123.6 73 84.9
Eucgr.L01338 Eucalyptus grandis HOM05D004180 ORTHO05D005323 7.7e-27 123.6 73 84.9
FvH4_5g07410 Fragaria vesca HOM05D004180 ORTHO05D005323 7.7e-27 123.6 73 84.9
Nn3g16580 Nelumbo nucifera HOM05D004180 ORTHO05D005323 1.0e-26 123.2 73 86.3
Rhsim12G0172100 Rhododendron simsii HOM05D004180 ORTHO05D005323 1.0e-26 123.2 73 87.7
AL664U10020 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 1.3e-26 122.9 73 84.9
AL8G24380 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 1.3e-26 122.9 73 84.9
AT5G50320 Arabidopsis thaliana HOM05D004180 ORTHO05D005323 1.3e-26 122.9 73 84.9
CARHR258210 Cardamine hirsuta HOM05D004180 ORTHO05D005323 1.3e-26 122.9 73 84.9
Ciclev10019518m.g Citrus clementina HOM05D004180 ORTHO05D005323 1.3e-26 122.9 73 84.9
Manes.06G115200 Manihot esculenta HOM05D004180 ORTHO05D005323 1.3e-26 122.9 73 84.9
Sp6g12400 Schrenkiella parvula HOM05D004180 ORTHO05D005323 1.3e-26 122.9 73 84.9
Thecc.03G122700 Theobroma cacao HOM05D004180 ORTHO05D005323 1.3e-26 122.9 73 84.9
TWI14G0632 Tripterygium wilfordii HOM05D004180 ORTHO05D005323 1.3e-26 122.9 73 86.3
Gohir.D07G057966 Gossypium hirsutum HOM05D004180 ORTHO05D005323 2.2e-26 122.1 73 86.3
Gorai.001G061500 Gossypium raimondii HOM05D004180 ORTHO05D005323 2.2e-26 122.1 73 86.3
Carub.0008s1036 Capsella rubella HOM05D004180 ORTHO05D005323 2.9e-26 121.7 73 83.6
Thhalv10013124m.g Eutrema salsugineum HOM05D004180 ORTHO05D005323 2.9e-26 121.7 73 83.6
Mapoly0095s0008 Marchantia polymorpha HOM05D004180 ORTHO05D005323 2.9e-26 121.7 73 82.2
Sabra15G0112600 Salix brachista HOM05D004180 ORTHO05D005323 2.9e-26 121.7 73 84.9
Os04g0484900 Oryza sativa ssp. japonica HOM05D004180 ORTHO05D005323 3.8e-26 121.3 73 83.6
Hund05645 Selenicereus undatus HOM05D004180 ORTHO05D005323 3.8e-26 121.3 73 84.9
Zm00001eb079280 Zea mays HOM05D004180 ORTHO05D005323 3.8e-26 121.3 73 83.6
ATR0824G280 Amborella trichopoda HOM05D004180 ORTHO05D005323 5.0e-26 120.9 73 83.6
BcaC01g04814 Brassica carinata HOM05D004180 ORTHO05D005323 5.0e-26 120.9 73 83.6
A03p27780 Brassica napus HOM05D004180 ORTHO05D005323 5.0e-26 120.9 73 83.6
C03p33510 Brassica napus HOM05D004180 ORTHO05D005323 5.0e-26 120.9 73 83.6
BolC3t15672H Brassica oleracea HOM05D004180 ORTHO05D005323 5.0e-26 120.9 73 83.6
BraA03t11989Z Brassica rapa HOM05D004180 ORTHO05D005323 5.0e-26 120.9 73 83.6
FvH4_5g07450 Fragaria vesca HOM05D004180 ORTHO05D005323 5.0e-26 120.9 73 83.6
Gohir.A07G053600 Gossypium hirsutum HOM05D004180 ORTHO05D005323 6.5e-26 120.6 73 84.9
Zm00001eb425150 Zea mays HOM05D004180 ORTHO05D005323 8.5e-26 120.2 73 82.2
Pp3c18_6090 Physcomitrium patens HOM05D004180 ORTHO05D005323 1.1e-25 119.8 73 82.2
SMO137G0131 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.5e-25 119.4 73 80.8
EL10Ac7g18073 Beta vulgaris HOM05D004180 ORTHO05D005323 1.9e-25 119.0 73 80.8
SMO170G0003 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.9e-25 119.0 73 80.8
HPP92_004592 Vanilla planifolia HOM05D004180 ORTHO05D005323 2.5e-25 118.6 73 82.2
SMO137G0321 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 4.2e-25 117.9 73 79.5
SEGI_32601 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 5.5e-25 117.5 73 82.2
AagrBONN_evm.TU.Sc2ySwM_344.3483 Anthoceros agrestis HOM05D004180 ORTHO05D005323 3.4e-22 108.2 73 71.2
CBR_g17964 Chara braunii HOM05D004180 ORTHO05D005323 1.4e-20 102.8 68 75.0
MCO06G075 Micromonas commoda HOM05D004180 ORTHO05D005323 3.1e-20 101.7 73 68.5
MD06G1155400 Malus domestica HOM05D004180 ORTHO05D005323 1.6e-19 99.4 73 72.6
Cre07.g354100 Chlamydomonas reinhardtii HOM05D004180 ORTHO05D005323 1.7e-18 95.9 68 72.1
SalBow5G1916 Salvia bowleyana HOM05D004180 ORTHO05D005323 1.7e-18 95.9 71 70.4
BcaB01g02900 Brassica carinata HOM05D004180 ORTHO05D005323 1.8e-15 85.9 73 64.4
SMO137G0281 Selaginella moellendorffii HOM05D004180 ORTHO05D020683 4.0e-15 84.7 56 73.2
MD06G1152600 Malus domestica HOM05D004180 ORTHO05D020683 1.5e-14 82.8 49 79.6
RcHm_v2.0_Chr5g0026811 Rosa chinensis HOM05D004180 ORTHO05D005323 2.8e-13 78.6 55 72.7
Pp3c21_15940 Physcomitrium patens HOM05D004180 ORTHO05D005323 1.2e-11 73.2 46 76.1
FvH4_3g25041 Fragaria vesca HOM05D004180 ORTHO05D020683 5.9e-11 70.9 41 82.9
CDE02G3278 Ceratophyllum demersum HOM05D004180 ORTHO05D005323 6.6e-10 67.4 39 84.6
MD06G1152200 Malus domestica HOM05D004180 ORTHO05D005323 2.6e-06 55.5 39 71.8
MD06G1154300 Malus domestica HOM05D004180 ORTHO05D005323 7.5e-06 53.9 39 74.4


User provided reference genes

Program Settings