Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G123.2 Capsicum annuum HOM05D006076 ORTHO05D007506 1.3e-229 799.3 390 100.0
Sopen02g011760 Solanum pennellii HOM05D006076 ORTHO05D007506 4.7e-182 641.3 350 88.6
Nitab4.5_0002648g0050 Nicotiana tabacum HOM05D006076 ORTHO05D007506 1.3e-176 623.2 351 87.2
Solyc02g036380.3 Solanum lycopersicum HOM05D006076 ORTHO05D007506 1.9e-175 619.4 399 77.9
Nitab4.5_0000005g0100 Nicotiana tabacum HOM05D006076 ORTHO05D007506 2.3e-173 612.5 351 85.5
Solyc06g043140.4 Solanum lycopersicum HOM05D006076 ORTHO05D007506 2.4e-162 575.9 350 81.4
Dinv19079 Davidia involucrata HOM05D006076 ORTHO05D007506 2.0e-145 519.6 343 71.1
CSS0031022 Camellia sinensis var. sinensis HOM05D006076 ORTHO05D007506 5.0e-144 515.0 355 70.1
Cc07_g12790 Coffea canephora HOM05D006076 ORTHO05D007506 5.6e-143 511.5 354 69.2
Rhsim10G0185200 Rhododendron simsii HOM05D006076 ORTHO05D007506 7.5e-140 501.1 345 69.6
MSTRG.15638 Avicennia marina HOM05D006076 ORTHO05D007506 2.9e-139 499.2 349 69.1
CiPaw.11G066500 Carya illinoinensis HOM05D006076 ORTHO05D007506 1.9e-135 486.5 340 69.1
Thecc.04G060400 Theobroma cacao HOM05D006076 ORTHO05D007506 1.1e-133 480.7 341 66.3
Actinidia17164 Actinidia chinensis HOM05D006076 ORTHO05D007506 1.8e-133 479.9 350 68.3
DCAR_003407 Daucus carota HOM05D006076 ORTHO05D007506 2.3e-133 479.6 340 68.5
Hma1.2p1_0034F.1_g021380 Hydrangea macrophylla HOM05D006076 ORTHO05D007506 2.7e-129 466.1 344 65.4
Oeu012318.2 Olea europaea HOM05D006076 ORTHO05D007506 2.7e-129 466.1 418 57.7
COL.COLO4_20049 Corchorus olitorius HOM05D006076 ORTHO05D007506 7.8e-129 464.5 341 66.0
Peaxi162Scf00294g00628 Petunia axillaris HOM05D006076 ORTHO05D007506 7.8e-129 464.5 341 71.0
Ciclev10005246m.g Citrus clementina HOM05D006076 ORTHO05D007506 5.1e-128 461.8 342 67.3
Migut.K00743 Erythranthe guttata HOM05D006076 ORTHO05D007506 5.1e-128 461.8 354 63.0
Potri.017G139700 Populus trichocarpa HOM05D006076 ORTHO05D007506 8.6e-128 461.1 340 66.2
Sabra17G0117900 Salix brachista HOM05D006076 ORTHO05D007506 8.6e-128 461.1 340 65.9
SalBow5G0086 Salvia bowleyana HOM05D006076 ORTHO05D007506 1.9e-127 459.9 356 64.3
SalBow5G5467 Salvia bowleyana HOM05D006076 ORTHO05D007506 1.9e-127 459.9 356 64.3
SGA_v2.0_scaffold115G32050 Striga asiatica HOM05D006076 ORTHO05D007506 2.5e-127 459.5 342 64.0
QL04p075342 Quercus lobata HOM05D006076 ORTHO05D007506 5.6e-127 458.4 342 66.1
Gohir.D11G176000 Gossypium hirsutum HOM05D006076 ORTHO05D007506 1.4e-125 453.8 340 64.4
MD15G1436000 Malus domestica HOM05D006076 ORTHO05D007506 4.0e-125 452.2 344 65.7
TWI74G1437 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 5.2e-125 451.8 341 63.9
Manes.01G123200 Manihot esculenta HOM05D006076 ORTHO05D007506 8.9e-125 451.1 339 63.1
TWI53G1019 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 2.0e-124 449.9 342 63.5
TAR629G1722 Trochodendron aralioides HOM05D006076 ORTHO05D007506 2.0e-124 449.9 348 61.5
GSVIVG01013049001 Vitis vinifera HOM05D006076 ORTHO05D007506 2.0e-124 449.9 343 64.7
MD08G1242300 Malus domestica HOM05D006076 ORTHO05D007506 2.2e-123 446.4 342 63.5
Lalb_Chr17g0345871 Lupinus albus HOM05D006076 ORTHO05D007506 1.4e-122 443.7 342 62.3
vmacro20467 Vaccinium macrocarpon HOM05D006076 ORTHO05D007506 1.9e-122 443.4 470 51.9
Psat2g042920 Pisum sativum HOM05D006076 ORTHO05D007506 1.2e-121 440.7 342 61.4
RcHm_v2.0_Chr7g0220631 Rosa chinensis HOM05D006076 ORTHO05D007506 1.6e-121 440.3 381 59.1
AUR62004772 Chenopodium quinoa HOM05D006076 ORTHO05D007506 2.1e-121 439.9 347 63.7
FAN08G1959 Fragaria x ananassa HOM05D006076 ORTHO05D007506 2.1e-121 439.9 351 61.0
Lsat_1_v5_gn_3_67061 Lactuca sativa HOM05D006076 ORTHO05D007506 2.1e-121 439.9 343 63.0
TPR.G5335 Trifolium pratense HOM05D006076 ORTHO05D007506 2.1e-121 439.9 342 61.7
Eucgr.J01641 Eucalyptus grandis HOM05D006076 ORTHO05D007506 3.5e-121 439.1 346 61.8
LjContig00141g0009861 Lotus japonicus HOM05D006076 ORTHO05D007506 6.0e-121 438.3 343 64.1
EL10Ac4g08929 Beta vulgaris HOM05D006076 ORTHO05D007506 1.7e-120 436.8 343 62.7
PGR042G3996 Punica granatum HOM05D006076 ORTHO05D007506 1.7e-120 436.8 340 61.8
FvH4_5g28670 Fragaria vesca HOM05D006076 ORTHO05D007506 2.3e-120 436.4 347 61.1
THA.LOC104820862 Tarenaya hassleriana HOM05D006076 ORTHO05D007506 2.3e-120 436.4 343 61.5
CANSAT11G2533 Cannabis sativa HOM05D006076 ORTHO05D007506 3.0e-120 436.0 341 62.2
RcHm_v2.0_Chr2g0106631 Rosa chinensis HOM05D006076 ORTHO05D007506 3.9e-120 435.6 342 61.4
FAN18G0334 Fragaria x ananassa HOM05D006076 ORTHO05D007506 5.1e-120 435.3 347 60.8
Phvul.008G241000 Phaseolus vulgaris HOM05D006076 ORTHO05D007506 5.1e-120 435.3 340 62.6
Glyma.14G210200 Glycine max HOM05D006076 ORTHO05D007506 8.7e-120 434.5 342 61.7
FAN04G0499 Fragaria x ananassa HOM05D006076 ORTHO05D007506 1.1e-119 434.1 351 60.7
VMungo0647G0600 Vigna mungo HOM05D006076 ORTHO05D007506 1.5e-119 433.7 342 62.0
Ca_05760_v3 Cicer arietinum L. HOM05D006076 ORTHO05D007506 2.5e-119 433.0 342 61.1
unitig_0.g2639 Utricularia gibba HOM05D006076 ORTHO05D007506 5.6e-119 431.8 344 60.8
PSO782G3474 Papaver somniferum HOM05D006076 ORTHO05D007506 7.3e-119 431.4 351 61.0
arahy.Tifrunner.gnm1.ann1.19NIP2 Arachis hypogaea HOM05D006076 ORTHO05D007506 9.6e-119 431.0 352 59.4
HanXRQChr16g0532291 Helianthus annuus HOM05D006076 ORTHO05D007506 2.1e-118 429.9 341 61.9
Aqoxy3G04116 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 4.8e-118 428.7 353 61.5
PSO063G3081 Papaver somniferum HOM05D006076 ORTHO05D007506 4.8e-118 428.7 351 60.4
arahy.Tifrunner.gnm1.ann1.T03I92 Arachis hypogaea HOM05D006076 ORTHO05D007506 8.1e-118 427.9 352 59.1
Lj4A252G57 Lonicera japonica HOM05D006076 ORTHO05D007506 8.1e-118 427.9 310 68.1
Sc09g0004490 Simmondsia chinensis HOM05D006076 ORTHO05D007506 2.4e-117 426.4 344 59.3
Cfa019426 Carpinus fangiana HOM05D006076 ORTHO05D007506 3.1e-117 426.0 309 65.4
Glyma.02G240700 Glycine max HOM05D006076 ORTHO05D007506 1.2e-116 424.1 342 61.4
Gorai.007G188600 Gossypium raimondii HOM05D006076 ORTHO05D007506 1.5e-116 423.7 414 53.1
Thhalv10014026m.g Eutrema salsugineum HOM05D006076 ORTHO05D007506 9.9e-116 421.0 342 59.6
Carub.0006s1548 Capsella rubella HOM05D006076 ORTHO05D007506 1.7e-115 420.2 342 58.5
AT5G17290 Arabidopsis thaliana HOM05D006076 ORTHO05D007506 3.8e-115 419.1 340 58.8
CARHR195920 Cardamine hirsuta HOM05D006076 ORTHO05D007506 1.1e-114 417.5 342 59.4
AL6G28370 Arabidopsis lyrata HOM05D006076 ORTHO05D007506 5.4e-114 415.2 340 58.5
Aa31LG11G12390 Aethionema arabicum HOM05D006076 ORTHO05D007506 9.3e-114 414.5 343 58.0
ClCG05G010470 Citrullus lanatus HOM05D006076 ORTHO05D007506 9.3e-114 414.5 345 61.2
Sp6g26940 Schrenkiella parvula HOM05D006076 ORTHO05D007506 9.3e-114 414.5 343 58.0
Manes.02G080800 Manihot esculenta HOM05D006076 ORTHO05D007506 2.1e-113 413.3 341 59.2
BcaC03g18547 Brassica carinata HOM05D006076 ORTHO05D007506 2.7e-113 412.9 340 57.1
CsaV3_3G018020 Cucumis sativus L. HOM05D006076 ORTHO05D007506 2.7e-113 412.9 341 61.9
MELO3C019565.2 Cucumis melo HOM05D006076 ORTHO05D007506 7.9e-113 411.4 339 61.7
Duzib138G0191 Durio zibethinus HOM05D006076 ORTHO05D007506 1.0e-112 411.0 342 59.6
RcHm_v2.0_Chr5g0080521 Rosa chinensis HOM05D006076 ORTHO05D007506 3.0e-112 409.5 266 72.2
BcaB08g36791 Brassica carinata HOM05D006076 ORTHO05D007506 5.1e-112 408.7 340 57.4
A02p04100 Brassica napus HOM05D006076 ORTHO05D007506 5.1e-112 408.7 356 56.5
Medtr5g076920 Medicago truncatula HOM05D006076 ORTHO05D007506 5.1e-112 408.7 353 58.1
BraA02t05373Z Brassica rapa HOM05D006076 ORTHO05D007506 6.6e-112 408.3 341 56.9
C02p08950 Brassica napus HOM05D006076 ORTHO05D007506 2.5e-111 406.4 341 56.9
BolC2t06804H Brassica oleracea HOM05D006076 ORTHO05D007506 2.5e-111 406.4 341 56.9
BraA10t44270Z Brassica rapa HOM05D006076 ORTHO05D007506 3.3e-111 406.0 342 58.8
A10p22110 Brassica napus HOM05D006076 ORTHO05D007506 4.3e-111 405.6 342 58.8
BcaC04g18810 Brassica carinata HOM05D006076 ORTHO05D007506 1.3e-110 404.1 341 57.8
BolC9t58826H Brassica oleracea HOM05D006076 ORTHO05D007506 8.1e-110 401.4 341 57.8
ECA246G5189 Erigeron canadensis HOM05D006076 ORTHO05D000091 1.5e-108 397.1 296 63.9
CDE04G2995 Ceratophyllum demersum HOM05D006076 ORTHO05D007506 7.1e-106 388.3 340 53.2
C09p59900 Brassica napus HOM05D006076 ORTHO05D007506 1.9e-103 380.2 386 51.3
Atru.chr1.2153 Acer truncatum HOM05D006076 ORTHO05D007506 1.3e-102 377.5 258 68.2
Gohir.A11G169800 Gossypium hirsutum HOM05D006076 ORTHO05D007506 2.8e-102 376.3 340 56.5
ATR0807G042 Amborella trichopoda HOM05D006076 ORTHO05D007506 4.0e-101 372.5 350 54.3
Actinidia40417 Actinidia chinensis HOM05D006076 ORTHO05D007506 2.0e-100 370.2 249 71.5
Hund22204 Selenicereus undatus HOM05D006076 ORTHO05D007506 1.3e-99 367.5 361 53.5
Os02g0117800 Oryza sativa ssp. japonica HOM05D006076 ORTHO05D007506 5.1e-96 355.5 348 52.0
Ah.05g177670 Amaranthus hybridus HOM05D006076 ORTHO05D007506 1.1e-93 347.8 309 57.9
Zm00001eb230080 Zea mays HOM05D006076 ORTHO05D007506 5.3e-93 345.5 338 50.3
Sed0003951 Sechium edule HOM05D006076 ORTHO05D007506 2.2e-91 340.1 343 53.9
SEGI_25199 Sequoiadendron giganteum HOM05D006076 ORTHO05D007506 8.4e-91 338.2 379 47.5
AUR62037480 Chenopodium quinoa HOM05D006076 ORTHO05D007506 3.9e-88 329.3 213 72.3
Prupe.1G579800 Prunus persica HOM05D006076 ORTHO05D007506 2.4e-85 320.1 183 79.2
Mapoly0019s0054 Marchantia polymorpha HOM05D006076 ORTHO05D007506 1.0e-83 314.7 311 49.2
Cpa.g.sc178.26 Carica papaya HOM05D006076 ORTHO05D007506 1.3e-78 297.7 155 85.8
Nn4g24719 Nelumbo nucifera HOM05D006076 ORTHO05D007506 6.3e-78 295.4 283 53.7
MBI06_g30602_MAGBIO Magnolia biondii HOM05D006076 ORTHO05D007506 2.0e-76 290.4 274 54.4
AagrBONN_evm.TU.Sc2ySwM_344.1639 Anthoceros agrestis HOM05D006076 ORTHO05D007506 5.0e-75 285.8 401 39.4
Pp3c4_11110 Physcomitrium patens HOM05D006076 ORTHO05D007506 3.2e-74 283.1 376 40.2
SMO116G0154 Selaginella moellendorffii HOM05D006076 ORTHO05D007506 1.6e-68 264.2 347 41.2
Haze_08537 Corylus avellana HOM05D006076 ORTHO05D007506 9.4e-66 255.0 347 42.7
QL04p075308 Quercus lobata HOM05D006076 ORTHO05D007506 2.6e-63 246.9 131 85.5
TAR629G0059 Trochodendron aralioides HOM05D006076 ORTHO05D007506 3.1e-61 240.0 128 81.2
QL04p075158 Quercus lobata HOM05D006076 ORTHO05D007506 4.0e-56 223.0 220 53.6
HPP92_002577 Vanilla planifolia HOM05D006076 ORTHO05D007506 7.0e-53 212.2 262 46.2
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 7.0e-53 212.2 262 46.2
CBR_g50474 Chara braunii HOM05D001161 ORTHO05D000497 7.5e-39 165.6 131 54.2
QL04p043726 Quercus lobata HOM05D000176 ORTHO05D007506 3.5e-36 156.8 86 83.7
HanXRQChr02g0046461 Helianthus annuus HOM05D006076 ORTHO05D007506 1.0e-32 145.2 188 44.1
HanXRQChr16g0508921 Helianthus annuus HOM05D006076 ORTHO05D007506 1.0e-32 145.2 188 44.1
QL04p075322 Quercus lobata HOM05D006076 ORTHO05D007506 8.3e-30 135.6 74 83.8
Cpa.g.sc178.27 Carica papaya HOM05D006076 ORTHO05D007506 9.2e-29 132.1 138 52.9
BcaNung00408 Brassica carinata HOM05D006076 ORTHO05D007506 1.2e-28 131.7 194 40.2
QL04p075364 Quercus lobata HOM05D000397 ORTHO05D007506 1.5e-23 114.8 129 49.6
Aqoxy531s001 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 2.9e-22 110.5 151 47.7
Cre14.g630907 Chlamydomonas reinhardtii HOM05D006076 ORTHO05D007506 2.5e-18 97.4 198 31.8
AUR62037479 Chenopodium quinoa HOM05D006076 ORTHO05D007506 3.3e-18 97.1 122 47.5
Actinidia40416 Actinidia chinensis HOM05D006076 ORTHO05D007506 1.7e-14 84.7 93 54.8


User provided reference genes

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