Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1160.5 Capsicum annuum HOM05D005206 ORTHO05D006219 3.6e-310 1067.4 533 100.0
Nitab4.5_0000257g0230 Nicotiana tabacum HOM05D005206 ORTHO05D006219 1.6e-273 945.7 536 88.1
Nitab4.5_0005722g0070 Nicotiana tabacum HOM05D005206 ORTHO05D006219 2.1e-265 918.7 540 85.9
Sopen05g002140 Solanum pennellii HOM05D005206 ORTHO05D006219 1.8e-261 905.6 539 83.9
Solyc05g006120.3 Solanum lycopersicum HOM05D005206 ORTHO05D006219 5.3e-261 904.0 539 84.0
Peaxi162Scf00421g00833 Petunia axillaris HOM05D005206 ORTHO05D006219 9.6e-255 883.2 536 83.8
Migut.L01447 Erythranthe guttata HOM05D005206 ORTHO05D006219 3.3e-215 751.9 546 71.2
Dinv30996 Davidia involucrata HOM05D005206 ORTHO05D006219 7.0e-213 744.2 547 67.8
Lj3A1048T22 Lonicera japonica HOM05D005206 ORTHO05D006219 9.1e-213 743.8 539 70.3
THA.LOC104816736 Tarenaya hassleriana HOM05D005206 ORTHO05D006219 1.3e-211 740.0 543 69.2
Potri.010G094800 Populus trichocarpa HOM05D005206 ORTHO05D006219 8.5e-211 737.3 538 69.7
Atru.chr11.1960 Acer truncatum HOM05D005206 ORTHO05D006219 3.2e-210 735.3 544 68.4
SalBow2G2775 Salvia bowleyana HOM05D005206 ORTHO05D006219 5.5e-210 734.6 547 70.4
CSS0048376 Camellia sinensis var. sinensis HOM05D005206 ORTHO05D006219 2.7e-209 732.3 548 67.5
Ciclev10031184m.g Citrus clementina HOM05D005206 ORTHO05D006219 8.0e-209 730.7 547 68.6
Rhsim12G0124400 Rhododendron simsii HOM05D005206 ORTHO05D006219 1.0e-208 730.3 548 69.3
Sp1g09150 Schrenkiella parvula HOM05D005206 ORTHO05D006219 1.8e-208 729.6 540 69.1
TAR371G0117 Trochodendron aralioides HOM05D005206 ORTHO05D006219 3.0e-208 728.8 550 68.0
Manes.01G196700 Manihot esculenta HOM05D005206 ORTHO05D006219 5.2e-208 728.0 545 68.1
MSTRG.7873 Avicennia marina HOM05D005206 ORTHO05D006219 6.8e-208 727.6 537 68.9
Glyma.02G065600 Glycine max HOM05D005206 ORTHO05D006219 1.5e-207 726.5 550 67.5
Hma1.2p1_1049F.1_g251730 Hydrangea macrophylla HOM05D005206 ORTHO05D006219 5.7e-207 724.5 541 69.7
Sabra10G0067100 Salix brachista HOM05D005206 ORTHO05D006219 2.8e-206 722.2 568 65.8
arahy.Tifrunner.gnm1.ann1.05N2IU Arachis hypogaea HOM05D005206 ORTHO05D006219 6.3e-206 721.1 534 67.2
Lj2g0017178 Lotus japonicus HOM05D005206 ORTHO05D006219 8.3e-206 720.7 538 67.3
Sed0001006 Sechium edule HOM05D005206 ORTHO05D006219 2.4e-205 719.2 541 66.7
BcaC07g38608 Brassica carinata HOM05D005206 ORTHO05D006219 2.7e-204 715.7 537 68.0
Thhalv10009477m.g Eutrema salsugineum HOM05D005206 ORTHO05D006219 2.7e-204 715.7 540 67.0
RcHm_v2.0_Chr4g0444541 Rosa chinensis HOM05D005206 ORTHO05D006219 2.7e-204 715.7 537 67.2
Carub.0001s0995 Capsella rubella HOM05D005206 ORTHO05D006219 4.5e-204 714.9 534 67.6
Lsat_1_v5_gn_9_83200 Lactuca sativa HOM05D005206 ORTHO05D006219 4.5e-204 714.9 536 67.9
CsaV3_5G031880 Cucumis sativus L. HOM05D005206 ORTHO05D006219 7.7e-204 714.1 537 67.0
Gohir.A01G141200 Gossypium hirsutum HOM05D005206 ORTHO05D006219 1.7e-203 713.0 546 66.5
Medtr7g039450 Medicago truncatula HOM05D005206 ORTHO05D006219 2.3e-203 712.6 537 67.4
GSVIVG01020174001 Vitis vinifera HOM05D005206 ORTHO05D006219 2.3e-203 712.6 548 65.7
DCAR_007103 Daucus carota HOM05D005206 ORTHO05D006219 3.8e-203 711.8 543 65.0
Medtr5g040170 Medicago truncatula HOM05D005206 ORTHO05D006219 3.8e-203 711.8 537 67.4
Ah.03g132350 Amaranthus hybridus HOM05D005206 ORTHO05D006219 6.6e-203 711.1 548 66.1
Gorai.002G164200 Gossypium raimondii HOM05D005206 ORTHO05D006219 6.6e-203 711.1 546 66.3
RcHm_v2.0_Chr4g0444551 Rosa chinensis HOM05D005206 ORTHO05D006219 1.5e-202 709.9 538 66.5
Eucgr.B02561 Eucalyptus grandis HOM05D005206 ORTHO05D006219 1.9e-202 709.5 541 66.5
QL03p062489 Quercus lobata HOM05D005206 ORTHO05D006219 3.3e-202 708.8 547 66.7
FvH4_4g35030 Fragaria vesca HOM05D005206 ORTHO05D006219 5.5e-202 708.0 539 66.2
Thecc.02G242400 Theobroma cacao HOM05D005206 ORTHO05D006219 7.2e-202 707.6 544 66.5
vmacro16280 Vaccinium macrocarpon HOM05D005206 ORTHO05D006219 9.5e-202 707.2 553 66.7
CARHR010660 Cardamine hirsuta HOM05D005206 ORTHO05D006219 1.2e-201 706.8 541 67.7
Phvul.004G071000 Phaseolus vulgaris HOM05D005206 ORTHO05D006219 1.2e-201 706.8 546 64.8
SGA_v2.0_scaffold166G38340 Striga asiatica HOM05D005206 ORTHO05D006219 2.1e-201 706.1 643 60.2
Actinidia15006 Actinidia chinensis HOM05D005206 ORTHO05D006219 4.7e-201 704.9 566 64.8
BraA08t35305Z Brassica rapa HOM05D005206 ORTHO05D006219 4.7e-201 704.9 538 66.2
BcaC07g38570 Brassica carinata HOM05D005206 ORTHO05D006219 6.1e-201 704.5 538 66.2
C08p13780 Brassica napus HOM05D005206 ORTHO05D006219 6.1e-201 704.5 538 66.2
BolC8t49011H Brassica oleracea HOM05D005206 ORTHO05D006219 8.0e-201 704.1 538 66.2
Sc11g0001370 Simmondsia chinensis HOM05D005206 ORTHO05D006219 8.0e-201 704.1 557 63.2
Aa31LG1G4440 Aethionema arabicum HOM05D005206 ORTHO05D006219 3.0e-200 702.2 543 66.1
arahy.Tifrunner.gnm1.ann1.U6W7RM Arachis hypogaea HOM05D005206 ORTHO05D006219 3.0e-200 702.2 565 64.2
C08p13760 Brassica napus HOM05D005206 ORTHO05D006219 3.0e-200 702.2 538 66.5
Lalb_Chr09g0326511 Lupinus albus HOM05D005206 ORTHO05D006219 1.2e-199 700.3 531 66.9
Dinv31107 Davidia involucrata HOM05D005206 ORTHO05D006219 9.8e-199 697.2 511 67.9
TWI36G1721 Tripterygium wilfordii HOM05D005206 ORTHO05D006219 1.3e-198 696.8 551 65.2
A08p33920 Brassica napus HOM05D005206 ORTHO05D006219 1.8e-197 693.0 562 63.3
EL10Ac8g20565 Beta vulgaris HOM05D005206 ORTHO05D006219 2.4e-197 692.6 544 66.2
FvH4_4g35010 Fragaria vesca HOM05D005206 ORTHO05D006219 4.1e-197 691.8 534 65.7
CANSAT56G0905 Cannabis sativa HOM05D005206 ORTHO05D006219 7.0e-197 691.0 528 65.9
HanXRQChr16g0527551 Helianthus annuus HOM05D005206 ORTHO05D006219 9.2e-197 690.6 536 66.2
Nn4g22885 Nelumbo nucifera HOM05D005206 ORTHO05D006219 2.9e-195 685.6 537 65.0
PSO063G3522 Papaver somniferum HOM05D005206 ORTHO05D006219 2.5e-194 682.6 526 66.2
PSO832G4147 Papaver somniferum HOM05D005206 ORTHO05D006219 7.3e-194 681.0 545 63.5
Aqoxy3G03082 Aquilegia oxysepala HOM05D005206 ORTHO05D006219 1.6e-193 679.9 559 62.1
Hund25315 Selenicereus undatus HOM05D005206 ORTHO05D006219 6.1e-193 677.9 546 63.7
PGR119G2380 Punica granatum HOM05D005206 ORTHO05D006219 1.4e-192 676.8 552 63.6
Gohir.D01G132600 Gossypium hirsutum HOM05D005206 ORTHO05D006219 1.8e-192 676.4 526 65.8
MBI15_g34233_MAGBIO Magnolia biondii HOM05D005206 ORTHO05D006219 1.8e-192 676.4 596 60.9
AUR62039408 Chenopodium quinoa HOM05D005206 ORTHO05D006219 6.8e-192 674.5 567 61.9
Cfa009102 Carpinus fangiana HOM05D005206 ORTHO05D006219 2.6e-191 672.5 544 64.2
Haze_12137 Corylus avellana HOM05D005206 ORTHO05D006219 1.4e-189 666.8 587 60.1
ECA236G3606 Erigeron canadensis HOM05D005206 ORTHO05D006219 2.4e-189 666.0 533 63.2
ATR1149G100 Amborella trichopoda HOM05D005206 ORTHO05D006219 2.5e-186 656.0 544 60.7
Os06g0237200 Oryza sativa ssp. japonica HOM05D005206 ORTHO05D006219 6.8e-184 647.9 539 60.9
Duzib248G0782 Durio zibethinus HOM05D005206 ORTHO05D006219 1.2e-180 637.1 536 61.0
SalBow2G3534 Salvia bowleyana HOM05D005206 ORTHO05D006219 6.6e-179 631.3 532 63.7
Zm00001eb371940 Zea mays HOM05D005206 ORTHO05D006219 1.9e-178 629.8 555 59.1
TPR.G13491 Trifolium pratense HOM05D005206 ORTHO05D006219 2.3e-176 622.9 494 64.2
AL1G21320 Arabidopsis lyrata HOM05D005206 ORTHO05D006219 4.0e-176 622.1 454 69.4
AT1G10520 Arabidopsis thaliana HOM05D005206 ORTHO05D006219 6.8e-176 621.3 473 65.3
Ca_18093_v3 Cicer arietinum L. HOM05D005206 ORTHO05D006219 1.2e-175 620.5 508 62.6
MELO3C034123.2 Cucumis melo HOM05D005206 ORTHO05D006219 9.2e-173 610.9 577 57.7
COL.COLO4_38096 Corchorus olitorius HOM05D005206 ORTHO05D006219 3.5e-172 609.0 509 62.5
Hund05954 Selenicereus undatus HOM05D005206 ORTHO05D006219 3.5e-172 609.0 558 58.6
TWI36G0196 Tripterygium wilfordii HOM05D005206 ORTHO05D006219 3.9e-171 605.5 484 63.8
SEGI_33189 Sequoiadendron giganteum HOM05D005206 ORTHO05D006219 6.6e-171 604.7 566 55.8
CiPaw.06G074900 Carya illinoinensis HOM05D005206 ORTHO05D006219 7.3e-170 601.3 383 76.2
ClCG05G025020 Citrullus lanatus HOM05D005206 ORTHO05D006219 4.9e-166 588.6 542 58.7
Psat2g114280 Pisum sativum HOM05D005206 ORTHO05D006219 6.4e-166 588.2 472 63.3
unitig_748.g7742 Utricularia gibba HOM05D005206 ORTHO05D006219 3.5e-164 582.4 415 70.4
FAN12G3755 Fragaria x ananassa HOM05D005206 ORTHO05D006219 4.0e-160 568.9 539 56.6
FAN22G1639 Fragaria x ananassa HOM05D005206 ORTHO05D006219 1.6e-156 557.0 533 56.8
FAN12G3075 Fragaria x ananassa HOM05D005206 ORTHO05D006219 8.1e-153 544.7 550 54.7
Prupe.1G259900 Prunus persica HOM05D005206 ORTHO05D006219 1.5e-146 523.9 430 62.6
Pp3c15_19010 Physcomitrium patens HOM05D005206 ORTHO05D006219 1.2e-143 514.2 547 48.8
AagrBONN_evm.TU.Sc2ySwM_344.2272 Anthoceros agrestis HOM05D005206 ORTHO05D006219 2.2e-142 510.0 526 51.3
MD16G1086700 Malus domestica HOM05D005206 ORTHO05D006219 6.7e-131 471.9 271 80.4
AL1G24280 Arabidopsis lyrata HOM05D005206 ORTHO05D006219 8.7e-131 471.5 275 80.7
Oeu025446.1 Olea europaea HOM05D005206 ORTHO05D006219 1.9e-130 470.3 374 65.2
Mapoly0057s0101 Marchantia polymorpha HOM05D005206 ORTHO05D006219 2.5e-125 453.4 469 52.7
SMO353G0008 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 1.4e-120 437.6 342 63.5
Cc11_g14230 Coffea canephora HOM05D005206 ORTHO05D006219 2.6e-119 433.3 357 63.3
QL03p062590 Quercus lobata HOM05D005206 ORTHO05D006219 2.6e-119 433.3 540 48.1
CDE07G1306 Ceratophyllum demersum HOM05D005206 ORTHO05D006219 1.4e-112 411.0 525 47.0
CBR_g3482 Chara braunii HOM05D005206 ORTHO05D006219 3.2e-109 399.8 329 56.2
AUR62026580 Chenopodium quinoa HOM05D005206 ORTHO05D006219 6.1e-100 369.0 217 76.5
PGSC0003DMG400015600 Solanum tuberosum HOM05D005206 ORTHO05D006219 3.0e-99 366.7 185 93.5
HPP92_017067 Vanilla planifolia HOM05D005206 ORTHO05D006219 2.5e-93 347.1 400 51.8
SHI08107 Sapria himalayana HOM05D005206 ORTHO05D006219 9.4e-93 345.1 395 51.1
Cc11_g14240 Coffea canephora HOM05D005206 ORTHO05D006219 1.7e-89 334.3 185 82.7
FAN07G1959 Fragaria x ananassa HOM05D005206 ORTHO05D006219 8.3e-89 332.0 270 63.3
Mapoly0078s0005 Marchantia polymorpha HOM05D005206 ORTHO05D006219 5.0e-86 322.8 535 36.1
AagrBONN_evm.TU.Sc2ySwM_362.251 Anthoceros agrestis HOM05D005206 ORTHO05D006219 1.2e-79 301.6 490 36.9
CBR_g48616 Chara braunii HOM05D005206 ORTHO05D006219 1.3e-78 298.1 493 38.5
FAN17G0295 Fragaria x ananassa HOM05D005206 ORTHO05D006219 2.3e-75 287.3 293 54.3
HPP92_017072 Vanilla planifolia HOM05D005206 ORTHO05D006219 5.8e-74 282.7 186 71.0
SMO235G0045 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 5.6e-69 266.2 312 44.2
Cpa.g.sc5.344 Carica papaya HOM05D005206 ORTHO05D006219 1.1e-64 251.9 278 53.2
SMO347G0124 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 1.2e-63 248.4 311 42.4
Cpa.g.sc5.345 Carica papaya HOM05D005206 ORTHO05D006219 1.3e-62 245.0 140 80.0
MD16G1086600 Malus domestica HOM05D005206 ORTHO05D006219 3.0e-62 243.8 275 50.5
AUR62026578 Chenopodium quinoa HOM05D005206 ORTHO05D006219 3.3e-61 240.4 288 51.0
VMungo0464G1917 Vigna mungo HOM05D005206 ORTHO05D006219 1.5e-58 231.5 268 51.1
Cpa.g.sc5.348 Carica papaya HOM05D005206 ORTHO05D006219 1.1e-53 215.3 112 90.2
HPP92_017071 Vanilla planifolia HOM05D005206 ORTHO05D006219 1.4e-43 181.8 245 48.6
Cfa026399 Carpinus fangiana HOM05D005206 ORTHO05D006219 4.2e-40 170.2 354 31.1
VMungo0464G2026 Vigna mungo HOM05D005206 ORTHO05D006219 1.9e-37 161.4 93 81.7
SHI08109 Sapria himalayana HOM05D005206 ORTHO05D006219 1.6e-36 158.3 124 60.5
PRCOL_00003765 Prasinoderma coloniale HOM05D005206 ORTHO05D006219 1.8e-35 154.8 428 27.3
MCO16G526 Micromonas commoda HOM05D005206 ORTHO05D006219 1.1e-32 145.6 575 24.7
FvH4_6g23350 Fragaria vesca HOM05D005206 ORTHO05D006219 7.1e-32 142.9 82 79.3
FvH4_5g07370 Fragaria vesca HOM05D003058 ORTHO05D003464 1.4e-24 118.6 99 60.6
RcHm_v2.0_Chr3g0484611 Rosa chinensis HOM05D005206 ORTHO05D006219 1.5e-21 108.6 62 79.0
Cre17.g716101 Chlamydomonas reinhardtii HOM05D005206 ORTHO05D006219 3.1e-19 100.9 221 32.1
Ca_04200_v3 Cicer arietinum L. HOM05D005206 ORTHO05D006219 1.5e-13 82.0 55 67.3
HPP92_017068 Vanilla planifolia HOM05D005206 ORTHO05D006219 1.5e-13 82.0 59 59.3
RcHm_v2.0_Chr4g0401081 Rosa chinensis HOM05D005206 ORTHO05D006219 1.2e-07 62.4 39 71.8


User provided reference genes

Program Settings